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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948613
Clone id TST38A01NGRL0003_M12
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_M12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTCTAGAGGCG
ACTCATCCTTCCCGAACGCAGCATACAACTCCCCGTCGTACTGCGCTCTCCAAGTGTCTC
TGTTCCATCTCTTTGCCGAGGGCAATGATAATACCTTCGCAGAAATAGACTTCATTTGAT
GGAATGGAGGGAAAAAGAGGCGTCGAGAAATCCTCTTGGCTTAACTTAACCCCGTACACT
CTAGGATCTCCCTTCGAGCCTGTTCGTTGAGGGAGGACCGAGGCGTCTCGGTACATGGGA
TTGAAGACTACTTGGAATAGCCAAGTAGGGAGCTGGGGCAAATACCGGGGATCCACCTTT
CTTGTTTTTTTTGGCCCCCCCCCCC
■■Homology search results ■■ -
sp_hit_id Q0ID68
Definition sp|Q0ID68|DAPAT_SYNS3 LL-diaminopimelate aminotransferase OS=Synechococcus sp. (strain CC9311)
Align length 51
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948613|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_M12, 5'
         (334 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0ID68|DAPAT_SYNS3 LL-diaminopimelate aminotransferase OS=Syn...    33   0.58 
sp|A5GW23|DAPAT_SYNR3 LL-diaminopimelate aminotransferase OS=Syn...    31   1.7  
sp|Q7U4C3|DAPAT_SYNPX LL-diaminopimelate aminotransferase OS=Syn...    30   2.9  
sp|Q3AMU5|DAPAT_SYNSC LL-diaminopimelate aminotransferase OS=Syn...    30   3.8  
sp|A5GIN1|DAPAT_SYNPW LL-diaminopimelate aminotransferase OS=Syn...    30   3.8  
sp|P0C2F9|FK105_ARATH Putative F-box/kelch-repeat protein At4g39...    29   6.4  
sp|P13528|UNC86_CAEEL Transcription factor unc-86 OS=Caenorhabdi...    29   6.4  
sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Hom...    29   8.4  

>sp|Q0ID68|DAPAT_SYNS3 LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain CC9311) GN=dapL PE=3 SV=2
          Length = 408

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D++V+  RTG  GD   YG    + +S ++      PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGESGDDGRYGGLTYLPISADNGFAAQIPSEPVDLIYLC 183


>sp|A5GW23|DAPAT_SYNR3 LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain RCC307) GN=dapL PE=3 SV=1
          Length = 408

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG-----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D++V+  RTG   +   YG        +  DF+ PL PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGDANEGGQYGGLSYLPITAANDFTAPL-PSTPVDLIYLC 183


>sp|Q7U4C3|DAPAT_SYNPX LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain WH8102) GN=dapL PE=3 SV=1
          Length = 408

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D +V+  RTG  G+   YG    + +S ++      PS P + +Y C
Sbjct: 133 PVYVDTNVMAGRTGEAGEEGRYGGLTYLPISADNGFAAQIPSEPVDLIYLC 183


>sp|Q3AMU5|DAPAT_SYNSC LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain CC9605) GN=dapL PE=3 SV=1
          Length = 408

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D++V+  RTG  G+   Y     + +S ++    L PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGEAGEIGRYAGLTYLPISADNGFAALIPSEPVDLIYLC 183


>sp|A5GIN1|DAPAT_SYNPW LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain WH7803) GN=dapL PE=3 SV=2
          Length = 408

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D++V+  RTG  GD   Y     + +S ++      PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGDAGDEGRYAGLTYLPISADNGFAAQIPSDPVDLIYLC 183


>sp|P0C2F9|FK105_ARATH Putative F-box/kelch-repeat protein At4g39756
           OS=Arabidopsis thaliana GN=At4g39756 PE=4 SV=1
          Length = 374

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 226 SSLNEQARREILECTGLS*AKRISRRLFFPPFHQMKSISAKVLSLPSAK---RWNRDTW 59
           ++LN + R  ILE         I   +F  PF+Q KSI   V++L   K    W +  W
Sbjct: 295 ATLNRRRRSSILEVAKYGDKVLILWEIFAKPFYQNKSIWCAVIALEKRKIDEIWGKVKW 353


>sp|P13528|UNC86_CAEEL Transcription factor unc-86 OS=Caenorhabditis
           elegans GN=unc-86 PE=2 SV=1
          Length = 467

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 224 LPQRTGSK--GDPRVYGVKLSQEDFSTPLFPSIPSN 123
           LP+R G +  GDPR + + LS   F  PLF +   N
Sbjct: 78  LPKRGGDQDIGDPRPFRIHLSPPSFKVPLFSTDMQN 113


>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo
           sapiens GN=DRGX PE=2 SV=1
          Length = 263

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 102 YYHCPRQRDGTETLGERST 46
           Y+HCP Q +GT T G  S+
Sbjct: 3   YFHCPPQLEGTATFGNHSS 21
tr_hit_id Q3HKA5
Definition tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicotiana tabacum
Align length 56
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948613|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_M12, 5'
         (334 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicot...    47   5e-04
tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein OS=Nicot...    47   5e-04
tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein OS=Nicot...    47   5e-04
tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, who...    46   8e-04
tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spina...    44   0.003
tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Popul...    44   0.004
tr|Q05QI0|Q05QI0_9SYNE Aspartate aminotransferase OS=Synechococc...    35   1.9  
tr|B1ZFY8|B1ZFY8_METPB Putative uncharacterized protein OS=Methy...    34   4.2  

>tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein
           OS=Nicotiana tabacum PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = -2

Query: 174 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 7
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein
           OS=Nicotiana sylvestris PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = -2

Query: 174 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 7
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein
           OS=Nicotiana tomentosiformis PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = -2

Query: 174 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 7
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001371001 PE=4 SV=1
          Length = 73

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = -2

Query: 87  RQRDGTETLGERSTTGSCMLRSGRMSR 7
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spinacia
           oleracea PE=4 SV=1
          Length = 72

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -2

Query: 84  QRDGTETLGERSTTGSCMLRSGRMSR 7
           ++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 41  KKGGTSTLGERSTTESCMLRSGRMNR 66


>tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa GN=Poptr_cp074 PE=4 SV=1
          Length = 71

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -2

Query: 87  RQRDGTETLGERSTTGSCMLRSGRMSR 7
           R++ GT TLGERST  SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTPESCMLRSGRMNR 65


>tr|Q05QI0|Q05QI0_9SYNE Aspartate aminotransferase OS=Synechococcus
           sp. RS9916 GN=RS9916_39581 PE=4 SV=1
          Length = 408

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 248 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 108
           P+Y D++V+  RTG  GD   YG    + +S E+  T   PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGDAGDNGRYGGLTYLPISAENGFTAQIPSEPVDLIYLC 183


>tr|B1ZFY8|B1ZFY8_METPB Putative uncharacterized protein
           OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
           13946 / BJ001) GN=Mpop_0129 PE=4 SV=1
          Length = 176

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -1

Query: 205 RREILECTGLS*AKRISRRLFFPPFHQMKSISAKVLSL 92
           R E+LECT  +  K I R+L  PP  Q+K +S+ +L L
Sbjct: 53  RNEVLECTLDAQQKNILRKLLNPPKVQVKDVSSPILDL 90