DK948624 |
Clone id |
TST38A01NGRL0003_M23 |
Library |
TST38 |
Length |
659 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_M23. 5' end sequence. |
Accession |
DK948624 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1275Contig1 |
Sequence |
CATCCACCCAAAGTGCAAACAAGGGTTACAGATTTTACAGCAAAAGGTTATTACTGCGAT CTAGTTCCAAGATAAAATCCTCTAGCTTAGAAACACCTCCTGCTGAGCTTTCAACTCCAA CTTCTACTCAACCACAATGTGATAACAACAAAGCTCCTCAATCAGTTTCCTTTTTTTGGA CCCATGTCGTTATGCCCTTATCTGCAAAGAGGACATCTTCAATGCCAGCAACCCCCATGC TTGATTCTGCATCCCCCTCTGGTGGATCATTACGAGGAGTTTCGGCTGATCGGTCATCCT CAAGTAGGCATGCTGTCAAAGGAGTCATTTCACGATCTCTTTCTGTTCCAGTACCTAAAA CTAGCATTTTTATACGTACGCCCCCCACTGGAGGTGGAACAATGCTGGTGAGGACAGCGA GTCCTCGTGTGCTTACAGCAGAGGGCCTGAAAGCTAAGGAAACAGATGCAATTATTGATG GTGAAGAAGAAGGGGAGGAGATTCCAGAAGAGGAGGCTGTTTGCAGAATTTGTTTTGACA TTCTGGATGAAAAAGGGGAAGCTTTTAAACTGGAGTGTGCTTGCAAAGGTGAACTCGCGC TCGCACATAAAGATTGTGCATTGAAATGGTTTGGAATAAAGGGAAATCGAACTTGTGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A6P320 |
Definition |
sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus |
Align length |
47 |
Score (bit) |
40.0 |
E-value |
0.011 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PJQ4 |
Definition |
tr|A7PJQ4|A7PJQ4_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
184 |
Score (bit) |
113.0 |
E-value |
1.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948624|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_M23, 5' (659 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PJQ4|A7PJQ4_VITVI Chromosome chr12 scaffold_18, whole genom... 113 1e-23 tr|Q6H6V3|Q6H6V3_ORYSJ Os02g0165000 protein OS=Oryza sativa subs... 111 4e-23 tr|B8AI80|B8AI80_ORYSI Putative uncharacterized protein OS=Oryza... 111 4e-23 tr|A3A3H2|A3A3H2_ORYSJ Putative uncharacterized protein OS=Oryza... 111 4e-23 tr|Q653U9|Q653U9_ORYSJ cDNA clone:J023088I08, full insert sequen... 99 3e-19 tr|Q0DA54|Q0DA54_ORYSJ Os06g0677300 protein (Fragment) OS=Oryza ... 99 3e-19 tr|B8B1F7|B8B1F7_ORYSI Putative uncharacterized protein OS=Oryza... 99 3e-19 tr|A3BEM0|A3BEM0_ORYSJ Putative uncharacterized protein OS=Oryza... 97 1e-18 tr|Q9FKI9|Q9FKI9_ARATH Emb|CAB86085.1 OS=Arabidopsis thaliana GN... 94 1e-17 tr|Q9ASR2|Q9ASR2_ARATH AT5g60580/muf9_230 OS=Arabidopsis thalian... 94 1e-17 tr|Q3E882|Q3E882_ARATH Uncharacterized protein At5g60580.2 OS=Ar... 94 1e-17 tr|A7PT25|A7PT25_VITVI Chromosome chr8 scaffold_29, whole genome... 93 2e-17 tr|A5B9W8|A5B9W8_VITVI Putative uncharacterized protein OS=Vitis... 93 2e-17 tr|A5BSH1|A5BSH1_VITVI Putative uncharacterized protein OS=Vitis... 92 2e-17 tr|Q9SF83|Q9SF83_ARATH F8A24.19 protein (Fragment) OS=Arabidopsi... 82 3e-14 tr|Q940P1|Q940P1_ARATH At3g09760/F8A24.19 (RING finger family pr... 82 3e-14 tr|Q1EPH4|Q1EPH4_MUSAC Zinc finger (C3HC4 type RING finger) fami... 80 1e-13 tr|Q9LYW7|Q9LYW7_ARATH Putative uncharacterized protein F15A17_2... 77 9e-13 tr|Q9FYM9|Q9FYM9_ARATH Arabidopsis thaliana genomic DNA, chromos... 77 9e-13 tr|Q940Q0|Q940Q0_ARATH AT5g03180/F15A17_210 OS=Arabidopsis thali... 77 9e-13 tr|Q7XXI7|Q7XXI7_ORYSJ Os04g0105100 protein OS=Oryza sativa subs... 76 2e-12 tr|A2XPJ8|A2XPJ8_ORYSI Putative uncharacterized protein OS=Oryza... 76 2e-12 tr|B6SYA5|B6SYA5_MAIZE Protein binding protein OS=Zea mays PE=2 ... 72 2e-11 tr|Q5Z887|Q5Z887_ORYSJ cDNA clone:J023003L01, full insert sequen... 72 3e-11 tr|B8B1E4|B8B1E4_ORYSI Putative uncharacterized protein OS=Oryza... 72 3e-11 tr|A3BBF4|A3BBF4_ORYSJ Putative uncharacterized protein OS=Oryza... 72 3e-11 tr|A7NWA0|A7NWA0_VITVI Chromosome chr5 scaffold_2, whole genome ... 70 9e-11 tr|Q9SQT6|Q9SQT6_ARATH F24P17.21 protein (At3g06330) (At3g06330/... 70 1e-10 tr|Q8L9G0|Q8L9G0_ARATH Putative uncharacterized protein OS=Arabi... 70 1e-10 tr|Q2V3X9|Q2V3X9_ARATH Uncharacterized protein At3g06330.2 OS=Ar... 70 1e-10
>tr|A7PJQ4|A7PJQ4_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018834001 PE=4 SV=1 Length = 520
Score = 113 bits (282), Expect = 1e-23 Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Frame = +3
Query: 114 TPTSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADR 293 TP+S P +K S SF V+ P S K T S+PATP+ S S S L+ + D Sbjct: 121 TPSSDGPL---DKPTTSRSFSLNKVLFP-SVKATYSLPATPIASSGSES---LQEKNLDG 173
Query: 294 SSS-SRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXX 470 S S+ V+ ++RSLSVPV + +R + GG + V +A+PR + +G Sbjct: 174 ESDFSKVEVQHHMTRSLSVPVNVKARSLRRMDSTGGLIRVISATPRPVAVDGASQDDAPV 233
Query: 471 XXXXXXXXXXXXXXXX-VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGN 647 VCRICF L E G+ KLEC+CKGELALAH+DCA+KWF IKGN Sbjct: 234 TEIVSGDDGEDIPEEEAVCRICFIELGEGGDTLKLECSCKGELALAHQDCAVKWFSIKGN 293
Query: 648 RTCD 659 +TCD Sbjct: 294 KTCD 297
>tr|Q6H6V3|Q6H6V3_ORYSJ Os02g0165000 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0023I17.10 PE=2 SV=1 Length = 487
Score = 111 bits (277), Expect = 4e-23 Identities = 73/184 (39%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Frame = +3
Query: 114 TPTSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADR 293 TP+S+ Q KA S SF +T V+ LSAKRT S+P TP+ A+ S G + + Sbjct: 112 TPSSSGQQV---KATTSRSFSFTKVINSLSAKRTHSLPVTPV---AASGPSSHEGHADNL 165
Query: 294 SSSSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXX 473 S+ ++ V+ I RSLS P S +R + G ++ T +PR + E + + Sbjct: 166 PSTVKNEVETQIRRSLSAPGNHDSKDLRRTASSGLIRVIPT-TPRPVPVETVASNDGIEE 224
Query: 474 XXXXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGN 647 VCRIC L+E GE KLEC+CKGELALAH++CA+KWF IKGN Sbjct: 225 AVDAPEDGGEDIPEEDAVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGN 284
Query: 648 RTCD 659 +TCD Sbjct: 285 KTCD 288
>tr|B8AI80|B8AI80_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05980 PE=4 SV=1 Length = 487
Score = 111 bits (277), Expect = 4e-23 Identities = 73/184 (39%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Frame = +3
Query: 114 TPTSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADR 293 TP+S+ Q KA S SF +T V+ LSAKRT S+P TP+ A+ S G + + Sbjct: 112 TPSSSGQQV---KATTSRSFSFTKVINSLSAKRTHSLPVTPV---AASGPSSHEGHADNL 165
Query: 294 SSSSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXX 473 S+ ++ V+ I RSLS P S +R + G ++ T +PR + E + + Sbjct: 166 PSTVKNEVETQIRRSLSAPGNHDSKDLRRTASSGLIRVIPT-TPRPVPVETVASNDGIEE 224
Query: 474 XXXXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGN 647 VCRIC L+E GE KLEC+CKGELALAH++CA+KWF IKGN Sbjct: 225 AVDAPEDGGEDIPEEDAVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGN 284
Query: 648 RTCD 659 +TCD Sbjct: 285 KTCD 288
>tr|A3A3H2|A3A3H2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005344 PE=4 SV=1 Length = 500
Score = 111 bits (277), Expect = 4e-23 Identities = 73/184 (39%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Frame = +3
Query: 114 TPTSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADR 293 TP+S+ Q KA S SF +T V+ LSAKRT S+P TP+ A+ S G + + Sbjct: 112 TPSSSGQQV---KATTSRSFSFTKVINSLSAKRTHSLPVTPV---AASGPSSHEGHADNL 165
Query: 294 SSSSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXX 473 S+ ++ V+ I RSLS P S +R + G ++ T +PR + E + + Sbjct: 166 PSTVKNEVETQIRRSLSAPGNHDSKDLRRTASSGLIRVIPT-TPRPVPVETVASNDGIEE 224
Query: 474 XXXXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGN 647 VCRIC L+E GE KLEC+CKGELALAH++CA+KWF IKGN Sbjct: 225 AVDAPEDGGEDIPEEDAVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGN 284
Query: 648 RTCD 659 +TCD Sbjct: 285 KTCD 288
>tr|Q653U9|Q653U9_ORYSJ cDNA clone:J023088I08, full insert sequence OS=Oryza sativa subsp. japonica GN=B1153E06.19 PE=2 SV=1 Length = 483
Score = 98.6 bits (244), Expect = 3e-19 Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 2/182 (1%) Frame = +3
Query: 120 TSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADRSS 299 T ++ Q DN +S SF V+ LSAKRT S+P TP+ S S S + + Sbjct: 110 TPSEGQQDNTSTLRSFSF--RKVINSLSAKRTHSLPVTPIATSDKTS--SPANQINNLPT 165
Query: 300 SSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXXXX 479 + V+ I RSLSVP + + +R + G ++ T +PR + + Sbjct: 166 TDDQDVQARIRRSLSVPGNRKNRSLRRADSLGVIRVIPT-TPRPIPVNTTASSDGIEETV 224
Query: 480 XXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGNRT 653 VCRIC L+E GE K+EC+CKGELALAH+DCA+KWF IKGN+ Sbjct: 225 DVPGDGGKDIPEEEAVCRICLVELNEGGETLKMECSCKGELALAHQDCAVKWFSIKGNKI 284
Query: 654 CD 659 CD Sbjct: 285 CD 286
>tr|Q0DA54|Q0DA54_ORYSJ Os06g0677300 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0677300 PE=4 SV=1 Length = 530
Score = 98.6 bits (244), Expect = 3e-19 Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 2/182 (1%) Frame = +3
Query: 120 TSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADRSS 299 T ++ Q DN +S SF V+ LSAKRT S+P TP+ S S S + + Sbjct: 157 TPSEGQQDNTSTLRSFSF--RKVINSLSAKRTHSLPVTPIATSDKTS--SPANQINNLPT 212
Query: 300 SSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXXXX 479 + V+ I RSLSVP + + +R + G ++ T +PR + + Sbjct: 213 TDDQDVQARIRRSLSVPGNRKNRSLRRADSLGVIRVIPT-TPRPIPVNTTASSDGIEETV 271
Query: 480 XXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGNRT 653 VCRIC L+E GE K+EC+CKGELALAH+DCA+KWF IKGN+ Sbjct: 272 DVPGDGGKDIPEEEAVCRICLVELNEGGETLKMECSCKGELALAHQDCAVKWFSIKGNKI 331
Query: 654 CD 659 CD Sbjct: 332 CD 333
>tr|B8B1F7|B8B1F7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24153 PE=4 SV=1 Length = 490
Score = 98.6 bits (244), Expect = 3e-19 Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 2/182 (1%) Frame = +3
Query: 120 TSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADRSS 299 T ++ Q DN +S SF V+ LSAKRT S+P TP+ S S S + + Sbjct: 110 TPSEGQQDNTSTLRSFSF--RKVINSLSAKRTHSLPVTPIATSDKTS--SPANQINNLPT 165
Query: 300 SSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLKAKXXXXXXX 479 + V+ I RSLSVP + + +R + G ++ T +PR + + Sbjct: 166 TDDQDVQARIRRSLSVPGNRKNRSLRRADSLGVIRVIPT-TPRPIPVNTTASSDGIEETV 224
Query: 480 XXXXXXXXXXXXX--VCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGNRT 653 VCRIC L+E GE K+EC+CKGELALAH+DCA+KWF IKGN+ Sbjct: 225 DVPGDGGEDIPEEEAVCRICLVELNEGGETLKMECSCKGELALAHQDCAVKWFSIKGNKI 284
Query: 654 CD 659 CD Sbjct: 285 CD 286
>tr|A3BEM0|A3BEM0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_021492 PE=4 SV=1 Length = 814
Score = 96.7 bits (239), Expect = 1e-18 Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 12/192 (6%) Frame = +3
Query: 120 TSTQPQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPMLDSASPSGGSLRGVSADRSS 299 T ++ Q DN +S SF V+ LSAKRT S+P TP+ S S S + + Sbjct: 110 TPSEGQQDNTSTLRSFSF--RKVINSLSAKRTHSLPVTPIATSDKTS--SPANQINNLPT 165
Query: 300 SSRHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVL------TAEGLK--- 452 + V+ I RSLSVP + + +R + G ++ T +PR + +++G++ Sbjct: 166 TDDQDVQARIRRSLSVPGNRKNRSLRRADSLGVIRVIPT-TPRPIPVNTTASSDGIEETV 224
Query: 453 ---AKXXXXXXXXXXXXXXXXXXXXVCRICFDILDEKGEAFKLECACKGELALAHKDCAL 623 VCRIC L+E GE K+EC+CKGELALAH+DCA+ Sbjct: 225 DELVHFTEFLTVPGDGGKDIPEEEAVCRICLVELNEGGETLKMECSCKGELALAHQDCAV 284
Query: 624 KWFGIKGNRTCD 659 KWF IKGN+ CD Sbjct: 285 KWFSIKGNKICD 296
>tr|Q9FKI9|Q9FKI9_ARATH Emb|CAB86085.1 OS=Arabidopsis thaliana GN=At5g60580 PE=4 SV=1 Length = 487
Score = 93.6 bits (231), Expect = 1e-17 Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 3/179 (1%) Frame = +3
Query: 132 PQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPML--DSASPSGGSLRGVSADRSSSS 305 P KA S S + + P KRTSS+P TP++ +S S GG+ S Sbjct: 133 PPASQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGS 191
Query: 306 RHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLK-AKXXXXXXXX 482 H I+RS SVP+ + ++ + V ++PRV + A Sbjct: 192 VH-----IARSRSVPLNDKELSLKGMDS---FFRVIPSTPRVKEGDVFSNASEAGNTETG 243
Query: 483 XXXXXXXXXXXXVCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGNRTCD 659 VCRIC L E GE K+EC+CKGELALAHKDCALKWF IKGN+TC+ Sbjct: 244 DADGEDIPEDEAVCRICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCE 302
>tr|Q9ASR2|Q9ASR2_ARATH AT5g60580/muf9_230 OS=Arabidopsis thaliana PE=2 SV=1 Length = 383
Score = 93.6 bits (231), Expect = 1e-17 Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 3/179 (1%) Frame = +3
Query: 132 PQCDNNKAPQSVSFFWTHVVMPLSAKRTSSMPATPML--DSASPSGGSLRGVSADRSSSS 305 P KA S S + + P KRTSS+P TP++ +S S GG+ S Sbjct: 133 PPASQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGS 191
Query: 306 RHAVKGVISRSLSVPVPKTSIFIRTPPTGGGTMLVRTASPRVLTAEGLK-AKXXXXXXXX 482 H I+RS SVP+ + ++ + V ++PRV + A Sbjct: 192 VH-----IARSRSVPLNDKELSLKGMDS---FFRVIPSTPRVKEGDVFSNASEAGNTETG 243
Query: 483 XXXXXXXXXXXXVCRICFDILDEKGEAFKLECACKGELALAHKDCALKWFGIKGNRTCD 659 VCRIC L E GE K+EC+CKGELALAHKDCALKWF IKGN+TC+ Sbjct: 244 DADGEDIPEDEAVCRICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCE 302
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