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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948644
Clone id TST38A01NGRL0003_N20
Library
Length 638
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_N20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCCACTCCAATTAGGCCTAGGCTCGGTATGTTTGACCTCCTTGTTCCACTTTGATCGTCG
ATCGTCTGTTTTGTAAGCGGCTATGGCGTCCTCCCTCGTCGCCCGCTTGCCATCCTCGCC
CTCGCCTGCCTCTACATCCTCCGCATTTTTCCCCTTCCAACCCATTCCGCAAAGCTTACC
TCTGCATAGCCATGTCCGCCATCTCAGATTCTCCTGGTCTGTGAATGCATCTTTAGGGGA
TGACACCTCCACTCAAATTGATGGCCCTGAGGCACCCTCTTCGTCATCATCTCCCGCCGA
CGCACCCTCTCCATCCACATCTACCGTAGTCACATCCAGTAAGCAGCCTCAAACGGTCTC
TCTGAGTCTTGAGGATGTCAACCCTGTTGGTCTTGGTAGACGATCTCGACAGCTCTTTGA
TGAGGTGTGGCGTCGCTTTACGGAGCTCGGACAGCTTACACGATCTCCTCGGGACAGTGA
GGAGTACGAAAGTGTGTTGATAGGAGGCCCAATGTGTGAGTTTACAATCCCTGGGGCAGA
GTCCACAACTGTCCTTGTTGCAGGTGCCACCAGTCGCGTGGGTCGGATTGTCATTCGAAA
GTTGCAGCTCAGAGGCTATAAAGTGAAGGCCTTGGTGC
■■Homology search results ■■ -
sp_hit_id O19883
Definition sp|O19883|YCF39_CYACA Uncharacterized protein ycf39 OS=Cyanidium caldarium
Align length 30
Score (bit) 35.4
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948644|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_N20, 5'
         (638 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O19883|YCF39_CYACA Uncharacterized protein ycf39 OS=Cyanidium...    35   0.25 
sp|P07001|PNTA_ECOLI NAD(P) transhydrogenase subunit alpha OS=Es...    32   2.8  
sp|Q1XDP9|YCF39_PORYE Uncharacterized protein ycf39 OS=Porphyra ...    32   3.6  
sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra ...    32   3.6  
sp|O07615|YHFP_BACSU Putative quinone oxidoreductase yhfP OS=Bac...    30   8.1  
sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomaviru...    30   8.1  
sp|P51108|DFRA_MAIZE Dihydroflavonol-4-reductase OS=Zea mays GN=...    30   8.1  
sp|P14721|DFRA_ANTMA Dihydroflavonol-4-reductase OS=Antirrhinum ...    30   8.1  

>sp|O19883|YCF39_CYACA Uncharacterized protein ycf39 OS=Cyanidium
           caldarium GN=ycf39 PE=3 SV=1
          Length = 312

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +2

Query: 548 TVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           ++LV GATS +GR +++K  ++GY+VK LV
Sbjct: 2   SLLVIGATSTLGRQIVKKALIQGYEVKCLV 31


>sp|P07001|PNTA_ECOLI NAD(P) transhydrogenase subunit alpha
           OS=Escherichia coli (strain K12) GN=pntA PE=1 SV=2
          Length = 510

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +2

Query: 455 LTRSPRDSEEYESVLI-----GGPMCEFTIPGAESTT---VLVAGATSRVGRIVIRKLQL 610
           +TR   DS +  SV++      G  CE+T+PG   TT   V V G T   GR+  +  QL
Sbjct: 267 ITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQL 326

Query: 611 RG 616
            G
Sbjct: 327 YG 328


>sp|Q1XDP9|YCF39_PORYE Uncharacterized protein ycf39 OS=Porphyra
           yezoensis GN=ycf39 PE=3 SV=1
          Length = 319

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 548 TVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           T+LV GAT  +GR ++R+    GY VK +V
Sbjct: 2   TLLVIGATGTLGRQIVRRALDEGYNVKCMV 31


>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra
           purpurea GN=ycf39 PE=3 SV=1
          Length = 319

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 548 TVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           T+LV GAT  +GR ++R+    GY VK +V
Sbjct: 2   TLLVIGATGTLGRQIVRRALDEGYNVKCMV 31


>sp|O07615|YHFP_BACSU Putative quinone oxidoreductase yhfP
           OS=Bacillus subtilis GN=yhfP PE=1 SV=1
          Length = 330

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 539 ESTTVLVAGATSRVGRIVIRKLQLRGYKVKA 631
           E  +VLV GAT  VG I +  L  RGY V A
Sbjct: 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVA 180


>sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomavirus
           type 17 GN=E2 PE=3 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 549 VVDSAPGIVNSHIGPPINTLSYSSLSRGDRVSCPSSVKRRHTSSKSCRDRLPRPTGLTSS 370
           V  S+P         PIN  S SS +RG   +  S+   + TS +  R +   PT  T+ 
Sbjct: 198 VTSSSPAAGEGTDASPINAASRSSPARGLSATSVSTRTTQRTSPRRYRRKASSPTATTTR 257

Query: 369 RLRETV 352
             R+ +
Sbjct: 258 HKRQDI 263


>sp|P51108|DFRA_MAIZE Dihydroflavonol-4-reductase OS=Zea mays GN=A1
           PE=3 SV=1
          Length = 357

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 536 AESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           +E  TVLV GA+  VG  ++ KL   GY V+A V
Sbjct: 8   SEKGTVLVTGASGFVGSWLVMKLLQAGYTVRATV 41


>sp|P14721|DFRA_ANTMA Dihydroflavonol-4-reductase OS=Antirrhinum
           majus GN=DFRA PE=2 SV=1
          Length = 446

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 542 STTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           STTV V GA   +G  ++ +L  RGY V+A V
Sbjct: 17  STTVCVTGAAGFIGSWLVMRLLERGYTVRATV 48
tr_hit_id B8LQR3
Definition tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 92
Score (bit) 157.0
E-value 5.0e-37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948644|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_N20, 5'
         (638 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea...   157   5e-37
tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella paten...   138   3e-31
tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome...   137   5e-31
tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella paten...   133   8e-30
tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Popul...   133   8e-30
tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana ...   130   5e-29
tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g1672...   130   5e-29
tr|Q84P75|Q84P75_ORYSJ Putative uncharacterized protein OS=Oryza...   126   1e-27
tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subs...   126   1e-27
tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subs...   126   1e-27
tr|A3A2Y6|A3A2Y6_ORYSJ Putative uncharacterized protein OS=Oryza...   126   1e-27
tr|A2YGS4|A2YGS4_ORYSI Putative uncharacterized protein OS=Oryza...   126   1e-27
tr|A2X0N8|A2X0N8_ORYSI Putative uncharacterized protein OS=Oryza...   126   1e-27
tr|Q00TV5|Q00TV5_OSTTA Putative UOS1 (ISS) OS=Ostreococcus tauri...    92   2e-17
tr|A4S8P7|A4S8P7_OSTLU Predicted protein (Fragment) OS=Ostreococ...    85   4e-15
tr|A8HTK2|A8HTK2_CHLRE Predicted protein OS=Chlamydomonas reinha...    80   1e-13
tr|Q3MAT2|Q3MAT2_ANAVT Putative uncharacterized protein OS=Anaba...    39   0.35 
tr|Q8YMA8|Q8YMA8_ANASP All5026 protein OS=Anabaena sp. (strain P...    37   1.0  
tr|B1G549|B1G549_9BURK NmrA family protein OS=Burkholderia grami...    37   1.0  
tr|A0ZF51|A0ZF51_NODSP Putative uncharacterized protein OS=Nodul...    37   1.0  
tr|Q3B6T1|Q3B6T1_PELLD Putative uncharacterized protein OS=Pelod...    37   1.3  
tr|B3E2G2|B3E2G2_GEOLS NAD-dependent epimerase/dehydratase OS=Ge...    37   1.3  
tr|A4JST2|A4JST2_BURVG NmrA family protein OS=Burkholderia vietn...    37   1.3  
tr|A0YIX6|A0YIX6_9CYAN Putative uncharacterized protein OS=Lyngb...    37   1.3  
tr|B2U6J8|B2U6J8_RALPJ NmrA family protein OS=Ralstonia picketti...    36   1.7  
tr|Q84JG9|Q84JG9_ORYSJ Os03g0818200 protein OS=Oryza sativa subs...    36   1.7  
tr|A3AP29|A3AP29_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|A2XNE3|A2XNE3_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|A8JH47|A8JH47_CHLRE Nucleoside diphosphate sugar epimerase OS...    36   2.3  
tr|Q8KDH4|Q8KDH4_CHLTE Putative uncharacterized protein OS=Chlor...    35   2.9  

>tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 516

 Score =  157 bits (397), Expect = 5e-37
 Identities = 73/92 (79%), Positives = 86/92 (93%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 541
           LSL+DVNPVGLGR+SRQ+FDEVWR+F+ELGQL+R+PR+ EEY+SVL+GGPMCEFTIP A 
Sbjct: 79  LSLDDVNPVGLGRKSRQIFDEVWRKFSELGQLSRTPRNDEEYDSVLVGGPMCEFTIPAAA 138

Query: 542 STTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
            TTVLV GATSR+GRI++RKL LRGYKVKALV
Sbjct: 139 DTTVLVVGATSRIGRILVRKLMLRGYKVKALV 170


>tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151003 PE=4 SV=1
          Length = 509

 Score =  138 bits (347), Expect = 3e-31
 Identities = 68/94 (72%), Positives = 79/94 (84%), Gaps = 2/94 (2%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 535
           LSL+DVNPVGLGRR+RQ+FD  WRR T LGQLT + R S+EY  E V++GGPMC+F  P 
Sbjct: 5   LSLDDVNPVGLGRRTRQVFDAAWRRLTNLGQLTSASRPSDEYDFEKVVVGGPMCDFQTPN 64

Query: 536 AESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           AE TTVLVAGAT RVGRI++RKLQLRGYKVKA+V
Sbjct: 65  AELTTVLVAGATGRVGRILVRKLQLRGYKVKAVV 98


>tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029723001
           PE=4 SV=1
          Length = 498

 Score =  137 bits (345), Expect = 5e-31
 Identities = 65/92 (70%), Positives = 79/92 (85%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 541
           +SL+DVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R  EE   +  GGPMCEF IPGA+
Sbjct: 2   ISLDDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRTDEETLLIREGGPMCEFAIPGAQ 61

Query: 542 STTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           +TTVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 62  NTTVLVVGATSRIGRIVVRKLMLRGYTVKALV 93


>tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187481 PE=4 SV=1
          Length = 509

 Score =  133 bits (335), Expect = 8e-30
 Identities = 65/94 (69%), Positives = 80/94 (85%), Gaps = 2/94 (2%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 535
           ++L+DVNPV LGRR+RQ+FD+ WRR T+LG LT + R S+EY  E+V++GGPMC+F  P 
Sbjct: 5   ITLDDVNPVRLGRRTRQVFDDAWRRLTKLGLLTSASRPSDEYDFETVVVGGPMCDFQTPN 64

Query: 536 AESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           AE TTVL+AGAT RVGRI+IRKLQLRGYKVKALV
Sbjct: 65  AELTTVLIAGATGRVGRILIRKLQLRGYKVKALV 98


>tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 584

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/95 (70%), Positives = 82/95 (86%), Gaps = 3/95 (3%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPR--DSEEYESVLIG-GPMCEFTIP 532
           L+LEDVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R  D E  +++LI  GPMCEF IP
Sbjct: 85  LNLEDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRADDKEALDALLIREGPMCEFAIP 144

Query: 533 GAESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           GA++TTVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 145 GAQNTTVLVVGATSRIGRIVVRKLMLRGYTVKALV 179


>tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana
           GN=F17F16.7 PE=4 SV=1
          Length = 583

 Score =  130 bits (328), Expect = 5e-29
 Identities = 65/95 (68%), Positives = 80/95 (84%), Gaps = 3/95 (3%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLIG-GPMCEFTIP 532
           L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+  P + E  +S+LI  GPMCEF +P
Sbjct: 90  LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 149

Query: 533 GAESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           GA++ TVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 150 GAQNVTVLVVGATSRIGRIVVRKLMLRGYTVKALV 184


>tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g16720;
           F17F16.7 (Putative uncharacterized protein At1g16720)
           OS=Arabidopsis thaliana GN=At1g16720/F17F16.7 PE=2 SV=1
          Length = 598

 Score =  130 bits (328), Expect = 5e-29
 Identities = 65/95 (68%), Positives = 80/95 (84%), Gaps = 3/95 (3%)
 Frame = +2

Query: 362 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLIG-GPMCEFTIP 532
           L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+  P + E  +S+LI  GPMCEF +P
Sbjct: 99  LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 158

Query: 533 GAESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           GA++ TVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 159 GAQNVTVLVVGATSRIGRIVVRKLMLRGYTVKALV 193


>tr|Q84P75|Q84P75_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 500

 Score =  126 bits (317), Expect = 1e-27
 Identities = 63/90 (70%), Positives = 77/90 (85%), Gaps = 3/90 (3%)
 Frame = +2

Query: 377 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 547
           V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ +   +  EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 7   VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 66

Query: 548 TVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           TVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 67  TVLVVGATSRIGRIVVRKLMLRGYNVKALV 96


>tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0026E05.10 PE=4 SV=1
          Length = 598

 Score =  126 bits (317), Expect = 1e-27
 Identities = 65/97 (67%), Positives = 79/97 (81%), Gaps = 5/97 (5%)
 Frame = +2

Query: 362 LSLEDV--NPVGLGRRSRQLFDEVWRRFTELGQL-TRSPRDSEEYESVLI--GGPMCEFT 526
           ++L+DV  NPVGLGRRSRQ+FDEVWR+F+ LGQ+ T +  + EE E VL   GGPMC+F 
Sbjct: 98  VALDDVIVNPVGLGRRSRQIFDEVWRKFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDFA 157

Query: 527 IPGAESTTVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           +PGA+ TTVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 158 VPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALV 194


>tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.3 PE=2 SV=1
          Length = 648

 Score =  126 bits (317), Expect = 1e-27
 Identities = 63/90 (70%), Positives = 77/90 (85%), Gaps = 3/90 (3%)
 Frame = +2

Query: 377 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 547
           V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ +   +  EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 155 VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 214

Query: 548 TVLVAGATSRVGRIVIRKLQLRGYKVKALV 637
           TVLV GATSR+GRIV+RKL LRGY VKALV
Sbjct: 215 TVLVVGATSRIGRIVVRKLMLRGYNVKALV 244