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NBDC - LSDB Archive
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DK948709
Clone id TST38A01NGRL0004_A14
Library
Length 713
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_A14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTCTCATCAAAAGCGCACTCTCTAGTGTACTTGTGAGTGTGCAGAGCTAAGTTGGCTTTA
CACACATACGCGCGCGCACACACCCAAACCCGTGCATTGCCTCCCTCAGCGTCTCCCTGC
CTGTGGCCGCCATGGCTCAATCTGCCCTTCTCTCCCGCTCCTCAGCGCTCGCTTCCTCCT
TCGCCAATTTCCAGGCAGGCTCCCGTATTGCAGCGTCGCAGGCCGGCGGCCTCTCCTTCG
CTCCCCTGCATTCCTCCAGGGTTTTCCAGTCCTCTCCCTTGAAGACAGTTGCCCTCTTTG
GCACCAAGACTCCCAAGAAGACAACTGGGTCCAAGCCTGCCCCAAAGACGAAGGGAAAGG
TTGAGGATGGCATTTTCGGGACCTCCGGTGGAATTGGCTTCACCAAGCAAAACGAGCTCT
TTGTTGGCCGAGTCGCCATGCTTGGGTTTGCGGCCTCTATTCTAGGTGAGGCCATCACAG
GAAAGGGAACTCTTGCTCAATTCGACTTCGAGACAGGGTTGCCACTAACTGAGACAGAGC
CCCTTCTCCTCTTCTTCATTTTGTTTACATTGCTGGGTGCTATTGGAGCTCTTGGTGACC
GAGGAAAGTTTGTGGATGATCCTGCCGAGCCCACTGGGCTTGACAGGGCTGTGATTGCTC
CCGGCAAGGGTGTGAAGTCAGCTCTCGGTCTGAAAGAGGGAGGGCCAACCTTT
■■Homology search results ■■ -
sp_hit_id Q9SMB4
Definition sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum
Align length 118
Score (bit) 126.0
E-value 1.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948709|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A14, 5'
         (713 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti...   126   1e-28
sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti...   124   4e-28
sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti...   121   3e-27
sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplasti...   116   1e-25
sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplasti...   116   1e-25
sp|O43711|TLX3_HUMAN T-cell leukemia homeobox protein 3 OS=Homo ...    37   0.11 
sp|O55144|TLX3_MOUSE T-cell leukemia homeobox protein 3 OS=Mus m...    37   0.14 
sp|Q76KD6|SPERI_HUMAN Speriolin OS=Homo sapiens GN=SPATC1 PE=2 SV=2    37   0.14 
sp|P51532|SMCA4_HUMAN Probable global transcription activator SN...    37   0.14 
sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=S...    36   0.18 
sp|P37370|VRP1_YEAST Verprolin OS=Saccharomyces cerevisiae GN=VR...    36   0.18 
sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp....    36   0.18 
sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=RNASEN PE=...    36   0.24 
sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=...    36   0.24 
sp|Q9UBW5|BIN2_HUMAN Bridging integrator 2 OS=Homo sapiens GN=BI...    36   0.24 
sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor...    35   0.31 
sp|Q9Z0G8|WIPF3_RAT WAS/WASL-interacting protein family member 3...    35   0.31 
sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HO...    35   0.31 
sp|A6NGB9|WIPF3_HUMAN WAS/WASL-interacting protein family member...    35   0.40 
sp|Q9HEC9|SEC16_NEUCR COPII coat assembly protein sec-16 OS=Neur...    35   0.40 
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Ho...    34   0.69 
sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Ara...    34   0.69 
sp|Q01W31|IF2_SOLUE Translation initiation factor IF-2 OS=Soliba...    34   0.69 
sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 OS=Chlamydo...    34   0.69 
sp|Q9S740|AGP19_ARATH Lysine-rich arabinogalactan protein 19 OS=...    34   0.69 
sp|P55194|3BP1_MOUSE SH3 domain-binding protein 1 OS=Mus musculu...    34   0.69 
sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN...    34   0.90 
sp|Q9ET54|PALLD_MOUSE Palladin OS=Mus musculus GN=Palld PE=1 SV=2      34   0.90 
sp|Q14244|MAP7_HUMAN Ensconsin OS=Homo sapiens GN=MAP7 PE=1 SV=1       34   0.90 
sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synech...    34   0.90 

>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic
           OS=Nicotiana tabacum GN=PSBS PE=2 SV=1
          Length = 274

 Score =  126 bits (317), Expect = 1e-28
 Identities = 69/118 (58%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 80  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 139

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGAL DRGKF+DDPA PTGLD+AVI PGKG KSALGL EGGP F
Sbjct: 140 PLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLF 197



 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 234


>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic
           OS=Solanum lycopersicum GN=PSBS PE=3 SV=1
          Length = 276

 Score =  124 bits (312), Expect = 4e-28
 Identities = 68/118 (57%), Positives = 73/118 (61%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVDDP  PTGL++AVI PGK  KSALGL EGGP F
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLF 199



 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic
           OS=Solanum sogarandinum GN=PSBS PE=2 SV=1
          Length = 276

 Score =  121 bits (304), Expect = 3e-27
 Identities = 66/118 (55%), Positives = 73/118 (61%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRG+F+DDPA  TGL++AVI PGK  KSALGL EGGP F
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLF 199



 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic
           OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1
          Length = 265

 Score =  116 bits (291), Expect = 1e-25
 Identities = 66/118 (55%), Positives = 73/118 (61%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            K NELFVGRVAM+GFAAS+LGEA+TGKG LAQ +           
Sbjct: 72  VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAE 131

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVDDP  PTGL++AVI PGK V+SALGLKE GP F
Sbjct: 132 PLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLF 187



 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224


>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic
           OS=Spinacia oleracea GN=PSBS PE=1 SV=1
          Length = 274

 Score =  116 bits (290), Expect = 1e-25
 Identities = 74/166 (44%), Positives = 87/166 (52%)
 Frame = +3

Query: 216 SQAGGLSFAPLHSSRVFQSSPLKTVALFXXXXXXXXXXXXXXXXXXXXVEDXXXXXXXXX 395
           S    L F+PL SS    S+  KT+ALF                    VED         
Sbjct: 37  SSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVEKPKLK----VEDGLFGTSGGI 92

Query: 396 XXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXX 575
              K+NELFVGRVAM+GFAAS+LGE ITGKG L+Q +                       
Sbjct: 93  GFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLL 152

Query: 576 XAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
            AIGALGDRG+FVD+P   TGL++AVI PGK V+SALGLK  GP F
Sbjct: 153 GAIGALGDRGRFVDEPT--TGLEKAVIPPGKDVRSALGLKTKGPLF 196



 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LGFA S++GE ITGKG LAQ +
Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLN 233


>sp|O43711|TLX3_HUMAN T-cell leukemia homeobox protein 3 OS=Homo
           sapiens GN=TLX3 PE=1 SV=3
          Length = 291

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 28/98 (28%), Positives = 39/98 (39%)
 Frame = -2

Query: 706 GPPSFRPRADFTPLPGAITALSSPVGSAGSSTNFPRSPRAPIAPSNVNKMKKRRRGSVSV 527
           GPP  RP A +  LP +   L +P   AGS      S    +AP+ V ++   R      
Sbjct: 46  GPPGGRPGATYPSLPASFAGLGAPFEDAGS-----YSVNLSLAPAGVIRVPAHR------ 94

Query: 526 SGNPVSKSN*ARVPFPVMASPRIEAANPSMATRPTKSS 413
                        P P    P + +A P+M + PT SS
Sbjct: 95  -------------PLPGAVPPPLPSALPAMPSVPTVSS 119


>sp|O55144|TLX3_MOUSE T-cell leukemia homeobox protein 3 OS=Mus
           musculus GN=Tlx3 PE=2 SV=1
          Length = 291

 Score = 36.6 bits (83), Expect = 0.14
 Identities = 28/98 (28%), Positives = 39/98 (39%)
 Frame = -2

Query: 706 GPPSFRPRADFTPLPGAITALSSPVGSAGSSTNFPRSPRAPIAPSNVNKMKKRRRGSVSV 527
           GPP  RP A +  LP +   L +P   AGS      S    +AP+ V ++   R      
Sbjct: 46  GPPGGRPGAAYPSLPASFAGLGAPFEDAGS-----YSVNLSLAPAGVIRVPAHR------ 94

Query: 526 SGNPVSKSN*ARVPFPVMASPRIEAANPSMATRPTKSS 413
                        P P    P + +A P+M + PT SS
Sbjct: 95  -------------PLPGAVPPPLPSALPAMPSVPTVSS 119


>sp|Q76KD6|SPERI_HUMAN Speriolin OS=Homo sapiens GN=SPATC1 PE=2 SV=2
          Length = 591

 Score = 36.6 bits (83), Expect = 0.14
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
 Frame = -2

Query: 700 PSFRPRADFTPLPGAI-TALSSPVGSAGSS--TNFPRSPRA-PIAPSNVNKMKKRRRGSV 533
           PS  P +  +PL G + T LS P  ++ SS  T+F  SP A P+  +  + +     G++
Sbjct: 106 PSATPGSLMSPLTGTLSTLLSGPAPTSQSSPLTSFLTSPIAGPLTGTLASSLGLPSTGTL 165

Query: 532 ---SVSGNPVSKSN*ARVPFPVMASPRIEAANP---SMATRPTKSSFCLVKP----IPPE 383
              S+   PV+ S  + +  PVM +  +  ++P   S AT P  S   L  P    + PE
Sbjct: 166 TPSSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVSQNLLANPMSNLVLPE 225

Query: 382 VPKM 371
            P++
Sbjct: 226 APRL 229


>sp|P51532|SMCA4_HUMAN Probable global transcription activator
           SNF2L4 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
          Length = 1647

 Score = 36.6 bits (83), Expect = 0.14
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 PPSASPCLWP--PWLNLPF-SPAPQRSLPPSPISRQAPVLQRRRPAASPSLP 246
           PP   P  WP  P  N    +  PQ+ +PP P  R +P      PAASP +P
Sbjct: 276 PPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327


>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17
            OS=Schizosaccharomyces pombe GN=SPAC23A1.17 PE=1 SV=1
          Length = 1611

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 6/141 (4%)
 Frame = -2

Query: 703  PPSFRPRADFTPLPGAITALSSPVGSAGSSTNFPRSPR-APIAPSNVNKMKKRRRGSVSV 527
            PP   P AD  P+P  + + + PV    S+   P+S   AP AP  V           + 
Sbjct: 1022 PPVPLPSADAPPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079

Query: 526  SGNPVSKSN*ARVPFPVMASPRIEAANPSMATRPTKSSFCLVKPIP-----PEVPKMPSS 362
            SG P        VP P    P      PS+A  P       V P+P     P VPK   +
Sbjct: 1080 SGAP-------PVPAPSGIPP---VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVA 1129

Query: 361  TFPFVFGAGLDPVVFLGVLVP 299
              P    +G  PV    V  P
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAP 1150



 Score = 32.3 bits (72), Expect = 2.6
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
 Frame = -2

Query: 703  PPSFRPRADFTPLPG---AITALSSPVGSAGSSTNFPRSPRAPIAPSNVNKMKKRRRGSV 533
            PP  +P     P+P    A+  + +P G+         +P  P+ PS    + K      
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPV-PSGAPPVPKP----- 1145

Query: 532  SVSGNPV-SKSN*ARVPFPVMASPRIEAANPSMATRPTKSSFCLVKPIPP--EVPKMP 368
            SV+  PV + S    VP P +A+P + A  PS    P       V P+PP  E P +P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 31.2 bits (69), Expect = 5.8
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
 Frame = +1

Query: 100  PPSASPCLWPPWLNLPFSPAPQRSLPPSPISRQAPVLQRRRPAASPSLPCIPPGFXXXXX 279
            P  A+P +  P   +P  P P   +PP P   +AP +    P  S  +P +PP       
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV----PKPSVGVPPVPPPSTAPPV 1219

Query: 280  XXXXXXXXXXXXXXXXGPSLPQRRRERLRMA---FSGP-PVELASPSKTSSLLAES 435
                             P +P    E   ++    S P P   ASPS TSS +A +
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASA 1275
tr_hit_id Q2LAH0
Definition tr|Q2LAH0|Q2LAH0_NICBE Chloroplast photosystem II 22 kDa component OS=Nicotiana benthamiana
Align length 118
Score (bit) 128.0
E-value 4.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948709|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A14, 5'
         (713 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2LAH0|Q2LAH0_NICBE Chloroplast photosystem II 22 kDa compone...   128   4e-28
tr|Q2LAH1|Q2LAH1_NICBE Chloroplast photosystem II 22 kDa compone...   125   4e-27
tr|B3RFS0|B3RFS0_SOLNI Chloroplast chlorophyll a/b-binding prote...   125   4e-27
tr|Q943K1|Q943K1_ORYSJ cDNA clone:001-002-B11, full insert seque...   120   1e-25
tr|A2WXD9|A2WXD9_ORYSI Putative uncharacterized protein OS=Oryza...   120   1e-25
tr|A4L9I5|A4L9I5_GOSHI Putative photosystem II protein OS=Gossyp...   119   2e-25
tr|A4L9G7|A4L9G7_GOSRA Putative photosystem II protein OS=Gossyp...   119   2e-25
tr|B2ZAP6|B2ZAP6_9ROSI Putative photosystem II protein OS=Gossyp...   118   4e-25
tr|A9TJ15|A9TJ15_PHYPA Photosystem II 22kDa chloroplast protein ...   117   1e-24
tr|Q94EI1|Q94EI1_ARATH Putative uncharacterized protein (At1g445...   116   1e-24
tr|Q56XH2|Q56XH2_ARATH Photosystem II chlorophyll-binding protei...   116   1e-24
tr|A9NK12|A9NK12_PICSI Putative uncharacterized protein OS=Picea...   112   3e-24
tr|A7NVD7|A7NVD7_VITVI Chromosome chr18 scaffold_1, whole genome...   115   3e-24
tr|Q6WFB1|Q6WFB1_MAIZE Photosystem II subunit PsbS OS=Zea mays P...   114   8e-24
tr|B6TKD1|B6TKD1_MAIZE Photosystem II 22 kDa protein OS=Zea mays...   114   8e-24
tr|Q7XSS8|Q7XSS8_ORYSJ OSJNBa0039K24.28 protein (Putative unchar...   113   1e-23
tr|Q40716|Q40716_ORYSJ 22 kDa protein of photosystem II OS=Oryza...   113   1e-23
tr|Q259V3|Q259V3_ORYSA B0518A01.1 protein (H0814G11.22 protein) ...   113   1e-23
tr|Q0J8R9|Q0J8R9_ORYSJ Os04g0690800 protein OS=Oryza sativa subs...   113   1e-23
tr|A2XZ94|A2XZ94_ORYSI Putative uncharacterized protein OS=Oryza...   113   1e-23
tr|A9PIG1|A9PIG1_POPTR Putative uncharacterized protein OS=Popul...   112   2e-23
tr|Q3ECX1|Q3ECX1_ARATH Uncharacterized protein At1g44575.2 OS=Ar...   112   3e-23
tr|B7FJ53|B7FJ53_MEDTR Putative uncharacterized protein (Fragmen...   110   7e-23
tr|Q2VL34|Q2VL34_9LILI PSII subunit PsbS (Fragment) OS=Xerophyta...   109   2e-22
tr|Q1EMP1|Q1EMP1_PLAMJ Photosystem II, 22 kDa Protein OS=Plantag...   109   2e-22
tr|A9NYQ2|A9NYQ2_PICSI Putative uncharacterized protein OS=Picea...   100   1e-19
tr|A8HPM5|A8HPM5_CHLRE Chloroplast photosystem II-associated 22 ...    58   7e-07
tr|A8HPM2|A8HPM2_CHLRE Chloroplast photosystem II-associated 22 ...    58   7e-07
tr|A4QPL3|A4QPL3_ACEAT Chloroplast photosystem II 22 kDa PsbS pr...    57   1e-06
tr|A4QPL4|A4QPL4_ACEAT Chloroplast photosystem II 22 kDa PsbS pr...    57   2e-06

>tr|Q2LAH0|Q2LAH0_NICBE Chloroplast photosystem II 22 kDa component
           OS=Nicotiana benthamiana GN=psbS1 PE=2 SV=1
          Length = 277

 Score =  128 bits (321), Expect = 4e-28
 Identities = 69/118 (58%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 83  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 142

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKF+DDP  PTGLD+AVI PGKG KSALGL EGGP F
Sbjct: 143 PLLLFFILFNLLGAIGALGDRGKFIDDPTPPTGLDKAVIPPGKGFKSALGLSEGGPLF 200



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 204 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 237


>tr|Q2LAH1|Q2LAH1_NICBE Chloroplast photosystem II 22 kDa component
           OS=Nicotiana benthamiana GN=psbS2 PE=4 SV=1
          Length = 274

 Score =  125 bits (313), Expect = 4e-27
 Identities = 68/118 (57%), Positives = 73/118 (61%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 80  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 139

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKF+DDP   TGLD+AVI PGKG KSALGL EGGP F
Sbjct: 140 PLLLFFILFNLLGAIGALGDRGKFIDDPVPATGLDKAVIPPGKGFKSALGLSEGGPLF 197



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 234


>tr|B3RFS0|B3RFS0_SOLNI Chloroplast chlorophyll a/b-binding protein
           (Fragment) OS=Solanum nigrum GN=PsbS PE=4 SV=1
          Length = 268

 Score =  125 bits (313), Expect = 4e-27
 Identities = 68/118 (57%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVDDPA PTGL++AVI PG+  KSALGL EGGP F
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGKFVDDPAPPTGLEKAVIPPGRSFKSALGLSEGGPLF 199



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>tr|Q943K1|Q943K1_ORYSJ cDNA clone:001-002-B11, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0039A07.6 PE=2 SV=1
          Length = 268

 Score =  120 bits (300), Expect = 1e-25
 Identities = 75/154 (48%), Positives = 83/154 (53%)
 Frame = +3

Query: 252 SSRVFQSSPLKTVALFXXXXXXXXXXXXXXXXXXXXVEDXXXXXXXXXXXXKQNELFVGR 431
           SS + ++  +KTVALF                     ED            K+NELFVGR
Sbjct: 39  SSSLGRAVSVKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGFTKENELFVGR 98

Query: 432 VAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAIGALGDRGKF 611
           VAMLGFAASILGEAITGKG LAQ +                        AIGALGDRG F
Sbjct: 99  VAMLGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGSF 158

Query: 612 VDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
           VDD    TGLD+AVIAPGKG +SALGL EGGP F
Sbjct: 159 VDD-QPVTGLDKAVIAPGKGFRSALGLSEGGPLF 191



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 195 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 228


>tr|A2WXD9|A2WXD9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04589 PE=4 SV=1
          Length = 268

 Score =  120 bits (300), Expect = 1e-25
 Identities = 75/154 (48%), Positives = 83/154 (53%)
 Frame = +3

Query: 252 SSRVFQSSPLKTVALFXXXXXXXXXXXXXXXXXXXXVEDXXXXXXXXXXXXKQNELFVGR 431
           SS + ++  +KTVALF                     ED            K+NELFVGR
Sbjct: 39  SSSLGRAVSVKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGFTKENELFVGR 98

Query: 432 VAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAIGALGDRGKF 611
           VAMLGFAASILGEAITGKG LAQ +                        AIGALGDRG F
Sbjct: 99  VAMLGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGSF 158

Query: 612 VDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
           VDD    TGLD+AVIAPGKG +SALGL EGGP F
Sbjct: 159 VDD-QPVTGLDKAVIAPGKGFRSALGLSEGGPLF 191



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 195 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 228


>tr|A4L9I5|A4L9I5_GOSHI Putative photosystem II protein OS=Gossypium
           hirsutum PE=4 SV=1
          Length = 278

 Score =  119 bits (298), Expect = 2e-25
 Identities = 66/118 (55%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 85  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 144

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVD+P  PTG++ AVI PGKG++ ALGLKEGGP F
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDEP--PTGIEGAVIPPGKGIRGALGLKEGGPLF 200



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 32/75 (42%), Positives = 36/75 (48%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAI 584
           K NELFVGR+A LG A S++GE ITGKG LAQ +                        AI
Sbjct: 204 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPISDIEPLVLFNVAFFFFAAI 263

Query: 585 GALGDRGKFVDDPAE 629
                 GKFV D AE
Sbjct: 264 NP--GTGKFVTDEAE 276


>tr|A4L9G7|A4L9G7_GOSRA Putative photosystem II protein OS=Gossypium
           raimondii PE=4 SV=1
          Length = 278

 Score =  119 bits (298), Expect = 2e-25
 Identities = 66/118 (55%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 85  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 144

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVD+P  PTG++ AVI PGKG++ ALGLKEGGP F
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDEP--PTGIEGAVIPPGKGIRGALGLKEGGPLF 200



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 32/75 (42%), Positives = 36/75 (48%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAI 584
           K NELFVGR+A LG A S++GE ITGKG LAQ +                        AI
Sbjct: 204 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPISDIEPLVLFNVAFFFFAAI 263

Query: 585 GALGDRGKFVDDPAE 629
                 GKFV D AE
Sbjct: 264 NP--GTGKFVTDEAE 276


>tr|B2ZAP6|B2ZAP6_9ROSI Putative photosystem II protein
           OS=Gossypioides kirkii PE=4 SV=1
          Length = 277

 Score =  118 bits (295), Expect = 4e-25
 Identities = 66/118 (55%), Positives = 74/118 (62%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 85  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 144

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRG+FVD+P  PTG++ AVI PGKGV+ ALGLKEGGP F
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGRFVDEP--PTGVEGAVIPPGKGVRGALGLKEGGPLF 200



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 204 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237


>tr|A9TJ15|A9TJ15_PHYPA Photosystem II 22kDa chloroplast protein
           OS=Physcomitrella patens subsp. patens GN=PSBS PE=4 SV=1
          Length = 279

 Score =  117 bits (292), Expect = 1e-24
 Identities = 68/118 (57%), Positives = 70/118 (59%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            K NELFVGRVAMLGFAASILGEA+TGKGTLAQFD           
Sbjct: 85  VEDGIFGTSGGIGFTKANELFVGRVAMLGFAASILGEALTGKGTLAQFDIETGIPLTETE 144

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVDD A   GLD  +I PGKGVK ALGL E GP F
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDD-APVAGLDSTIIKPGKGVKGALGLNEKGPVF 201



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A +I+GE ITGKG LAQ +
Sbjct: 205 KSNELFVGRLAQLGIAFAIIGEIITGKGALAQLN 238


>tr|Q94EI1|Q94EI1_ARATH Putative uncharacterized protein
           (At1g44575/T18F15) OS=Arabidopsis thaliana PE=2 SV=1
          Length = 265

 Score =  116 bits (291), Expect = 1e-24
 Identities = 66/118 (55%), Positives = 73/118 (61%)
 Frame = +3

Query: 360 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 539
           VED            K NELFVGRVAM+GFAAS+LGEA+TGKG LAQ +           
Sbjct: 72  VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAE 131

Query: 540 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGLDRAVIAPGKGVKSALGLKEGGPTF 713
                        AIGALGDRGKFVDDP  PTGL++AVI PGK V+SALGLKE GP F
Sbjct: 132 PLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLF 187



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 405 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 506
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224