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NBDC - LSDB Archive
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DK948717
Clone id TST38A01NGRL0004_A23
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_A23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTGCCTCTCCCCTCTCACCCACATAGCACCTACTGCCTTCGCAAGTAGGTTTAGGGTTT
CTGCAGTAGAGCAGCTATGGTGTCCGCCTGCTTCTCTTCAGTTAATGGTTCGCTTGCAGC
AGCAGCTGCCTCCACCACTAGGCCAGAGGGGCGTTTAACCCTGTTGCAGGCTCCCCGCTC
CTTGCGGACCTTGCGACCGTTCGAGCTTCGCATGCTCTCGCTGTCTGTCCCTCGCAAAGG
TCTACACAGACATGGATATGGTGTGGTTGGGCAAGCTCATGCAGAGCTTTCTGTGGAAGA
AGTTCAAGCCCTCGATGCCTCCTCAGACGAAGATGAGCGCGAAGAAGGTGACTCTCTTGA
TAACGGACCTTCTTTTCGGGACAACGGCCCGCCCTTTGGTGAGTCTGTGGCCAAGCTGTA
TGTTGGGAACCTGCCATGGAGCTGCAACAGCGAAGAACTTGCTGGCGTTTTTCAGAAAGT
GGGCAGCGTAGACATGGTTGAGGTTATTTATGACAAAGAGTCTGGCAGGAGTCGTGGTTT
TGGGTTTGTCACTATGAGCTCTGTAGAGGACTGTAATACTGCCATTGAGAAGCTAGACGG
GGCTGATTATGCTGGAAGGACATTGCGAGTGAATTTTCCCAACCGTAACAGAGGAGATGC
TCCTACCCCTCGTGCT
■■Homology search results ■■ -
sp_hit_id Q9ZUU4
Definition sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
Align length 108
Score (bit) 95.9
E-value 2.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948717|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A23, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chlor...    96   2e-19
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O...    94   5e-19
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=...    94   7e-19
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=...    93   1e-18
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=...    91   7e-18
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O...    91   7e-18
sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=S...    90   1e-17
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=...    87   8e-17
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=...    87   8e-17
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=...    87   1e-16
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=...    85   3e-16
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=...    84   7e-16
sp|Q44554|RBPB_ANASP Putative RNA-binding protein rbpB OS=Anabae...    75   4e-13
sp|Q9WX37|RBPE_ANASP Putative RNA-binding protein rbpE OS=Anabae...    73   1e-12
sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA OS=Synech...    72   4e-12
sp|Q9WX39|RBPF_ANASP Putative RNA-binding protein rbpF OS=Anabae...    71   5e-12
sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabae...    71   5e-12
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit...    70   1e-11
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit...    70   1e-11
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa...    69   3e-11
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=...    68   4e-11
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=...    68   4e-11
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=...    68   4e-11
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh...    68   4e-11
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor 64 kDa subunit...    68   4e-11
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor 64 kDa subunit...    68   4e-11
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor 64 kDa subunit...    68   4e-11
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong...    68   4e-11
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo...    68   4e-11
sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi...    68   5e-11

>sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220,
           chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1
           SV=1
          Length = 289

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
 Frame = +2

Query: 374 FRDNGPPFGESVA---KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFG 544
           F D  PP  +S +   KL+VGNLP++ +S +LA +F+  G+V+MVEVIYDK +GRSRGFG
Sbjct: 76  FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135

Query: 545 FVTMSSVEDCNTAIEKLDGADYAGRTLRVNF----PNRNRGDAPTPRA 676
           FVTMSSV +   A ++ +G +  GR LRVN     P R  G +  PR+
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS 183



 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 39/91 (42%), Positives = 54/91 (59%)
 Frame = +2

Query: 362 NGPSFRDNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGF 541
           +G  +   G     S  ++YVGNL W  +   L  +F + G V    VIYD++SGRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247

Query: 542 GFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 634
           GFVT  S ++   AI+ LDGAD  GR +RV+
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278


>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic
           OS=Nicotiana sylvestris PE=2 SV=1
          Length = 291

 Score = 94.4 bits (233), Expect = 5e-19
 Identities = 50/95 (52%), Positives = 67/95 (70%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P F E + KL+VGNLP+S +S  LAG+F++ G+V+MVEVIYDK +GRSRGFGFVTMS+ E
Sbjct: 81  PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139

Query: 569 DCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPR 673
           +   A ++ +G +  GR +RV     N G AP  R
Sbjct: 140 EVEAAEQQFNGYEIDGRAIRV-----NAGPAPAKR 169



 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
 Frame = +2

Query: 377 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 532
           RD    FG        +S  ++YVGNL W  +   L  +F + G+V   +V+YD++SGRS
Sbjct: 188 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 247

Query: 533 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 634
           RGFGFVT SS ++ N AI+ L+G D  GR++RV+
Sbjct: 248 RGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281


>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana plumbaginifolia PE=2 SV=1
          Length = 292

 Score = 94.0 bits (232), Expect = 7e-19
 Identities = 50/95 (52%), Positives = 67/95 (70%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P F E + KL+VGNLP+S +S  LAG+F++ G+V++VEVIYDK SGRSRGFGFVTMS+ E
Sbjct: 82  PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140

Query: 569 DCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPR 673
           +   A ++ +G +  GR +RV     N G AP  R
Sbjct: 141 EVEAAEQQFNGYEIDGRAIRV-----NAGPAPAKR 170



 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
 Frame = +2

Query: 377 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 532
           RD    FG        +S  ++YVGNL W  +   L  +F + G+V   +V+YD++SGRS
Sbjct: 189 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 248

Query: 533 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 634
           RGFGFVT SS ++ N AI+ L+G D  GR++RV+
Sbjct: 249 RGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282


>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic
           OS=Spinacia oleracea PE=1 SV=1
          Length = 233

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
 Frame = +2

Query: 380 DNGPPFGE--SVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVT 553
           + G  F E    AKL+VGNLP+  +SE+LAG+F   G V++ EVIY++E+ RSRGFGFVT
Sbjct: 43  EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102

Query: 554 MSSVEDCNTAIEKLDGADYAGRTLRVN 634
           MS+VE+   A+E L+G D  GR L VN
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVN 129



 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +2

Query: 401 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 580
           E   ++YVGNLPW  ++  L  +F + G V    V+ D+E+GRSRGFGFVTMSS  + N 
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205

Query: 581 AIEKLDGADYAGRTLRVN 634
           AI  LDG    GR +RVN
Sbjct: 206 AIAALDGQTLDGRAVRVN 223


>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana sylvestris PE=1 SV=1
          Length = 324

 Score = 90.5 bits (223), Expect = 7e-18
 Identities = 42/81 (51%), Positives = 57/81 (70%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           +LYVGNLP+S  S +L+ +F + G+V  VE++YD+ + RSRGF FVTM SVE+   AI  
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174

Query: 593 LDGADYAGRTLRVNFPNRNRG 655
            DG+   GRT++VNFP   RG
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRG 195



 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 36/80 (45%), Positives = 49/80 (61%)
 Frame = +2

Query: 395 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 574
           F +S  KLYV NL W+  S+ L   F         +VIYD+ SGRSRGFGF+T SS E  
Sbjct: 212 FVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAM 271

Query: 575 NTAIEKLDGADYAGRTLRVN 634
           N+A++ ++  +  GR LR+N
Sbjct: 272 NSALDTMNEVELEGRPLRLN 291


>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic
           OS=Nicotiana sylvestris PE=2 SV=1
          Length = 273

 Score = 90.5 bits (223), Expect = 7e-18
 Identities = 43/74 (58%), Positives = 58/74 (78%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           K++VGNLP+S +S  LA +F++ G+V+MVEVIYDK +GRSRGFGFVTMSS E+   A ++
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 593 LDGADYAGRTLRVN 634
            +G +  GR LRVN
Sbjct: 148 FNGYELDGRALRVN 161



 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 40/78 (51%), Positives = 54/78 (69%)
 Frame = +2

Query: 401 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 580
           +S  ++YVGNL W  + + L  +F + G V   +V+YD++SGRSRGFGFVT SS E+ N 
Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244

Query: 581 AIEKLDGADYAGRTLRVN 634
           AIE LDG D  GR +RV+
Sbjct: 245 AIESLDGVDLNGRAIRVS 262


>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic
           OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1
          Length = 260

 Score = 89.7 bits (221), Expect = 1e-17
 Identities = 40/83 (48%), Positives = 59/83 (71%)
 Frame = +2

Query: 398 GESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCN 577
           GE   +LYVGN+P + N++EL  + ++ G++++ EV+YDK SGRSR FGFVTM +VED N
Sbjct: 80  GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139

Query: 578 TAIEKLDGADYAGRTLRVNFPNR 646
             IEKL+  +  GR ++VN   +
Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEK 162



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 30/80 (37%), Positives = 45/80 (56%)
 Frame = +2

Query: 395 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 574
           F ES  K+Y+GNL  +  +E L   F + G V   +V     + +S GFGFV+ SS E+ 
Sbjct: 179 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 238

Query: 575 NTAIEKLDGADYAGRTLRVN 634
             AI+ L+ +   G+ +RVN
Sbjct: 239 EAAIQALNNSVLEGQKIRVN 258


>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic
           OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1
          Length = 329

 Score = 87.0 bits (214), Expect = 8e-17
 Identities = 41/85 (48%), Positives = 55/85 (64%)
 Frame = +2

Query: 380 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 559
           +  P   E   ++YVGNLPW  ++  L  +F + G V    V+YD+E+GRSRGFGFVTMS
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293

Query: 560 SVEDCNTAIEKLDGADYAGRTLRVN 634
            V++ N AI  LDG +  GR +RVN
Sbjct: 294 DVDELNEAISALDGQNLEGRAIRVN 318



 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 41/75 (54%), Positives = 58/75 (77%)
 Frame = +2

Query: 410 AKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIE 589
           AKL+VGNL +  NS+ LA +F++ G+V++ EVIY++E+ +SRGFGFVTMSSV++  TA+E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209

Query: 590 KLDGADYAGRTLRVN 634
           K +  D  GR L VN
Sbjct: 210 KFNRYDLNGRLLTVN 224


>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic
           OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2
          Length = 342

 Score = 87.0 bits (214), Expect = 8e-17
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KL+VGNL ++ +S +LA +F+  G+V+MVEVIYDK +GRSRGFGFVTMS+  +   A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 593 LDGADYAGRTLRVNF----PNRNRGDAPTPRA 676
            +G ++ GR LRVN     P R    +  PR+
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRS 191



 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 37/74 (50%), Positives = 50/74 (67%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           +LYVGNL W  +   L  +F + G V    VIYD++SGRS+GFGFVT+SS ++   AI  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 593 LDGADYAGRTLRVN 634
           L+GAD  GR +RV+
Sbjct: 318 LNGADLDGRQIRVS 331


>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana plumbaginifolia PE=2 SV=1
          Length = 279

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 42/74 (56%), Positives = 57/74 (77%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           K++VGNL +S +S  LA +F++ G+V+MVEVIYDK +GRSRGFGFVTMSS E+   A ++
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 593 LDGADYAGRTLRVN 634
            +G +  GR LRVN
Sbjct: 148 FNGYELDGRALRVN 161



 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
 Frame = +2

Query: 371 SFRDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESG 526
           SFR+N    G        +S  ++YVGNL W  + + L  +F + G V   +V+YD++SG
Sbjct: 173 SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 232

Query: 527 RSRGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 634
           RSRGFGFVT SS E+ N AIE LDG D  GR +RV+
Sbjct: 233 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
tr_hit_id A5BDH4
Definition tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 84
Score (bit) 117.0
E-value 5.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948717|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A23, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis...   117   5e-25
tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome ...   116   1e-24
tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment) OS=Physcomit...   112   3e-23
tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseo...   111   4e-23
tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea m...   108   4e-22
tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Popul...   107   7e-22
tr|O04240|O04240_VICFA RNA- or ssDNA-binding protein (Fragment) ...   107   9e-22
tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medic...   105   2e-21
tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subs...   104   4e-21
tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza...   104   4e-21
tr|B6U471|B6U471_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1      104   6e-21
tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein OS=Physcomitrella paten...   102   2e-20
tr|A9SSU3|A9SSU3_PHYPA Predicted protein OS=Physcomitrella paten...   101   5e-20
tr|A9TLQ5|A9TLQ5_PHYPA Predicted protein (Fragment) OS=Physcomit...   100   6e-20
tr|B6T531|B6T531_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1      100   8e-20
tr|A9P1T0|A9P1T0_PICSI Putative uncharacterized protein OS=Picea...   100   8e-20
tr|A9NNN9|A9NNN9_PICSI Putative uncharacterized protein OS=Picea...   100   8e-20
tr|Q8S7G2|Q8S7G2_ORYSA Putative ribonucleoprotein OS=Oryza sativ...    99   2e-19
tr|Q10KP0|Q10KP0_ORYSJ Os03g0376600 protein OS=Oryza sativa subs...    99   2e-19
tr|A2XHA8|A2XHA8_ORYSI Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|A6N1F5|A6N1F5_ORYSI Chloroplast 29 kDa ribonucleoprotein (Fra...    99   3e-19
tr|Q8LHN4|Q8LHN4_ORYSJ Os07g0631900 protein OS=Oryza sativa subs...    98   4e-19
tr|A2YNZ1|A2YNZ1_ORYSI Putative uncharacterized protein OS=Oryza...    98   4e-19
tr|A9NTU4|A9NTU4_PICSI Putative uncharacterized protein OS=Picea...    98   5e-19
tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea mays PE=2 SV=1         97   7e-19
tr|B4FMY7|B4FMY7_MAIZE Putative uncharacterized protein OS=Zea m...    97   7e-19
tr|A7PT43|A7PT43_VITVI Chromosome chr8 scaffold_29, whole genome...    96   2e-18
tr|Q8L941|Q8L941_ARATH Putative RNA-binding protein OS=Arabidops...    96   2e-18
tr|Q7GA50|Q7GA50_ARATH Putative RNA-binding protein OS=Arabidops...    96   2e-18
tr|O81989|O81989_HORVU Cp33Hv OS=Hordeum vulgare PE=2 SV=1             94   6e-18

>tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026573 PE=4 SV=1
          Length = 355

 Score =  117 bits (294), Expect = 5e-25
 Identities = 53/84 (63%), Positives = 67/84 (79%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP+SC+S  LAG+ Q  GS ++VEV+YD+++GRSRGF FVTMSSVEDCN  IE 
Sbjct: 67  KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG++Y GRTLRVNF ++ +   P
Sbjct: 127 LDGSEYGGRTLRVNFSDKPKPKLP 150



 Score = 47.0 bits (110), Expect = 0.001
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESG 526
           P + E+  KL+VGNL WS  SE L  VFQ+ G+V    V+YD E+G
Sbjct: 150 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETG 195


>tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020349001
           PE=4 SV=1
          Length = 283

 Score =  116 bits (291), Expect = 1e-24
 Identities = 52/84 (61%), Positives = 68/84 (80%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP+SC+S +LAG+ Q  GS ++VEV+Y++++GRSRGF FVTMSSVEDCN  IE 
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG++Y GRTLRVNF ++ +   P
Sbjct: 172 LDGSEYGGRTLRVNFSDKPKPKLP 195



 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 40/88 (45%), Positives = 57/88 (64%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL+VGNL WS  SE L  VFQ+ G+V    V+YD E+GRSRG+GFV  S+  
Sbjct: 195 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKA 254

Query: 569 DCNTAIEKLDGADYAGRTLRVNFPNRNR 652
           + +TA+E L+G +  GR +R++     R
Sbjct: 255 EMDTALESLNGVELEGRAIRISLAQGRR 282


>tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47163 PE=4 SV=1
          Length = 192

 Score =  112 bits (279), Expect = 3e-23
 Identities = 51/87 (58%), Positives = 65/87 (74%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY+GNLPW C+S +LAG+ Q+ GSV++VEVIYD+ESGRSRGF FVTM++ ED    IE+
Sbjct: 1   KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60

Query: 593 LDGADYAGRTLRVNFPNRNRGDAPTPR 673
           LDG D  GR L+V+FP   +     PR
Sbjct: 61  LDGHDVGGRPLKVSFPQSKQNRPSFPR 87



 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 39/74 (52%), Positives = 51/74 (68%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           K++VGNL W  ++  L  +F   G V    V+YD+ESGRSRGFGFVT S V + + AI+ 
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167

Query: 593 LDGADYAGRTLRVN 634
           LDGA++ GR LRVN
Sbjct: 168 LDGAEFDGRELRVN 181


>tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseolus
           vulgaris GN=RNP1 PE=2 SV=1
          Length = 287

 Score =  111 bits (278), Expect = 4e-23
 Identities = 49/84 (58%), Positives = 65/84 (77%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP+S +S +LAG+ Q  GS +++EV+YD+++G+SRGF FVTMS +EDCN  IE 
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG +Y GRTLRVNF N+ +   P
Sbjct: 174 LDGKEYLGRTLRVNFSNKPKAKEP 197



 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 37/88 (42%), Positives = 53/88 (60%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL+VGNL WS  +E L   FQ+ G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 197 PLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKE 256

Query: 569 DCNTAIEKLDGADYAGRTLRVNFPNRNR 652
           +   A+  L+  +  GR +RV+     R
Sbjct: 257 EMEAALGALNDVELEGRAMRVSLAEGKR 284


>tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 287

 Score =  108 bits (269), Expect = 4e-22
 Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
 Frame = +2

Query: 365 GPSFRDNGPPFGESVA--KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 538
           G S  D+GP    S    KLY GNLP++C+S +LAG+ Q+  S +MVEV+YD+ +GRSRG
Sbjct: 99  GASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRG 158

Query: 539 FGFVTMSSVEDCNTAIEKLDGADYAGRTLRVNFPNR 646
           F FVTM++V+DC   I+ LDG+ Y GRT++VNF +R
Sbjct: 159 FAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADR 194



 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
 Frame = +2

Query: 371 SFRDNGPP----FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 538
           +F D   P    + E+  KL+VGNL W+  SE L   F + G+V    V+YD E+GRSRG
Sbjct: 190 NFADRPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRG 249

Query: 539 FGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 634
           +GFV  S+ E+ + A+  L+G +  GR +RVN
Sbjct: 250 YGFVCYSTREEMDEALSSLNGMEMEGREMRVN 281


>tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 279

 Score =  107 bits (267), Expect = 7e-22
 Identities = 49/84 (58%), Positives = 65/84 (77%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP++ +S +LAG+ Q+ G+ +MVEV+Y +E+GRSRGF FVTMSS+EDC T IE 
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG+ Y GR LRVNF ++ +   P
Sbjct: 168 LDGSQYMGRILRVNFADKPKPKEP 191



 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 38/82 (46%), Positives = 55/82 (67%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL++GNL WS  SE L   FQ+ G+V    V+YD E+G+SRG+GFV  S+ E
Sbjct: 191 PLYPETEYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKE 250

Query: 569 DCNTAIEKLDGADYAGRTLRVN 634
           +  TA++ L+G +  GR LRV+
Sbjct: 251 ELETALQSLNGVELEGRALRVS 272


>tr|O04240|O04240_VICFA RNA- or ssDNA-binding protein (Fragment)
           OS=Vicia faba var. minor PE=2 SV=1
          Length = 289

 Score =  107 bits (266), Expect = 9e-22
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)
 Frame = +2

Query: 5   PLPSHPHSTYCLRK*V*GFCSRAAMVSACFSSVNGSLAAAA--ASTTRPEGRLTLLQAPR 178
           PLP  P   YC        C R+++ S+  ++V  S ++    AS   P+  +  L    
Sbjct: 4   PLPQSPQHGYCC-------CRRSSLFSSSINTVKSSRSSNRMFASVVIPQSSVEPLCIGT 56

Query: 179 SLRTLRPFELRMLSLSVPRKGLHRHGYGVVGQAHAELSVEEVQALXXXXXXXXXXXXXXX 358
           ++ + +        L +PR       Y  V Q  A ++V++ + +               
Sbjct: 57  TISSQK--------LWMPRF------YVAVAQEEAVVAVDDEEKVVVEEEEKENE----- 97

Query: 359 XNGPSFRDNGPPF---GESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGR 529
             G   ++NG       ++  KLY GNLP+S +S +LAG+ ++ GS ++VEV+YD+++G+
Sbjct: 98  -EGQGEKENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGK 156

Query: 530 SRGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVNFPNR 646
           SRGF F TM+ VEDC   IE LDG ++ GRTLRVNF ++
Sbjct: 157 SRGFAFATMTCVEDCKAVIENLDGKEFMGRTLRVNFSDK 195



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 50/86 (58%)
 Frame = +2

Query: 395 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 574
           + E+  KL++GNL W   SE L   FQ+ G+V    VIYD E+G SRG+GFV+ ++  + 
Sbjct: 203 YPETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEM 262

Query: 575 NTAIEKLDGADYAGRTLRVNFPNRNR 652
             A+  ++  +  GR LRV+     R
Sbjct: 263 EAALTIMNDVELEGRALRVSLAQGKR 288


>tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 285

 Score =  105 bits (263), Expect = 2e-21
 Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 6/95 (6%)
 Frame = +2

Query: 398 GESVA------KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 559
           GE+VA      KLY GNLP+S +S  LAG+ ++ GS +++EV+YD+++G+SRGF FVTMS
Sbjct: 103 GETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS 162

Query: 560 SVEDCNTAIEKLDGADYAGRTLRVNFPNRNRGDAP 664
            VEDCN  I+ LDG ++ GRTLRVNF ++ +   P
Sbjct: 163 CVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEP 197



 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 36/88 (40%), Positives = 56/88 (63%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL+VGNL W+  SE L   FQ+ G+V    V++D E+G+SRG+GFV+ ++  
Sbjct: 197 PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKS 256

Query: 569 DCNTAIEKLDGADYAGRTLRVNFPNRNR 652
           + +TA+  +D  +  GRTLRV+     R
Sbjct: 257 EMDTALAIMDNVELEGRTLRVSLAQGKR 284


>tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subsp.
           japonica GN=P0643F09.1 PE=2 SV=1
          Length = 316

 Score =  104 bits (260), Expect = 4e-21
 Identities = 46/84 (54%), Positives = 65/84 (77%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP++C+S +LAG+ Q   + +MVEV+YD+ +GRSRGF FVTMS++EDC   I+ 
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG+ Y+GRT+RVNF ++ +   P
Sbjct: 206 LDGSLYSGRTMRVNFADKPKPKLP 229



 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 39/82 (47%), Positives = 55/82 (67%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL+VGNL W+  SE L  +FQK G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 229 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 288

Query: 569 DCNTAIEKLDGADYAGRTLRVN 634
           + + A+  L+G +  GR +RVN
Sbjct: 289 EMDEALSSLNGTELEGREIRVN 310


>tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09422 PE=4 SV=1
          Length = 318

 Score =  104 bits (260), Expect = 4e-21
 Identities = 46/84 (54%), Positives = 65/84 (77%)
 Frame = +2

Query: 413 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 592
           KLY GNLP++C+S +LAG+ Q   + +MVEV+YD+ +GRSRGF FVTMS++EDC   I+ 
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207

Query: 593 LDGADYAGRTLRVNFPNRNRGDAP 664
           LDG+ Y+GRT+RVNF ++ +   P
Sbjct: 208 LDGSLYSGRTMRVNFADKPKPKLP 231



 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 39/82 (47%), Positives = 55/82 (67%)
 Frame = +2

Query: 389 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 568
           P + E+  KL+VGNL W+  SE L  +FQK G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 231 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 290

Query: 569 DCNTAIEKLDGADYAGRTLRVN 634
           + + A+  L+G +  GR +RVN
Sbjct: 291 EMDEALSSLNGTELEGREIRVN 312