DK948748 |
Clone id |
TST38A01NGRL0004_C06 |
Library |
TST38 |
Length |
704 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_C06. 5' end sequence. |
Accession |
DK948748 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL24Contig1 |
Sequence |
GTTATGTCAACGGCCACTGATGAGGCCCCGGCCGGGTTCACACCACCTCAGCTGAAGCAG GATACGCCATCACCGATCTTTGGCGGCAGTACGGGAGGCCTTCTGAGAAAGGCGCAGGTG GAGGAGTTCTATGTGATCACATGGGAGTCGCCGAAGGAACAGATCTTCGAGATGCCGACG GGAGGAGCTGCGATCATGAGGTCGGGGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCAG TGCCTTGCCCTTGGCACCAAGCTGCGTTCCAAGTTTAAAATTAATTACCAGTTCTACCGA GTGTTTCCTAATGGCGAGGTGCAGTACCTTCATCCCAAGGACGGAGTATACCCCGAGAAA GTGAACCCCGGCCGCAAGGGTGTTGGCGTGAACTTGCGCTCTATTGGAGAGAATGTAAAC CCCGCCACAGTCAAGTTCACTGGCAAGAACGCTTACGATTTGTGAGGAGCATGTTGCTGA CCCCTTTATGATTCTTTCTGTAAGTGGTCTGTGGCAAGCTCATGTCTTCTATCTTTCATG ATTGTAAAGTTTTTCTGTAATAGACTACTTCTTCCTCCGACGGTTCCAGTCTGAGAGCTT GTCATAAGTTGAGTTCATTCTATGGACTTGAACTGTCTATGTTTGTTATGGAAGGTACCT AGCTTTACTGTTTGACAGTTGAATTGGCATTTGTGTCATCAACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9S7H1 |
Definition |
sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana |
Align length |
150 |
Score (bit) |
272.0 |
E-value |
1.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948748|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_C06, 5' (704 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 272 1e-72 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 272 1e-72 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 270 4e-72 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 270 7e-72 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 269 1e-71 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 266 1e-70 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 262 1e-69 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 217 6e-56 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 204 5e-52 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 194 4e-49 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 191 3e-48 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 187 4e-47 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 185 2e-46 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 185 2e-46 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 182 2e-45 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 179 1e-44 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 175 2e-43 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 171 5e-42 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 169 1e-41 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 167 4e-41 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 167 4e-41 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 167 4e-41 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 166 1e-40 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 165 2e-40 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 162 2e-39 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 159 2e-38 sp|P84563|PSAD_POPEU Photosystem I reaction center subunit II (F... 55 5e-07 sp|Q3K9Y9|Y3677_PSEPF UPF0082 protein Pfl01_3677 OS=Pseudomonas ... 36 0.18 sp|P20117|PSAD_PEA Photosystem I reaction center subunit II (Fra... 33 1.1 sp|Q4K9M3|Y3960_PSEF5 UPF0082 protein PFL_3960 OS=Pseudomonas fl... 33 1.5
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 272 bits (696), Expect = 1e-72 Identities = 129/150 (86%), Positives = 138/150 (92%) Frame = +1
Query: 13 ATDEAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 192 AT EAP GFTPPQL +TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA Sbjct: 59 ATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 118
Query: 193 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 372 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178
Query: 373 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 462 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 272 bits (695), Expect = 1e-72 Identities = 129/152 (84%), Positives = 140/152 (92%) Frame = +1
Query: 7 STATDEAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 186 +T T EAP GFTPP+L +TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG Sbjct: 61 ATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
Query: 187 AAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 366 AAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP+GEVQYLHPKDGVYPEKVN Sbjct: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVN 180
Query: 367 PGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 462 PGR+GVG+N+RSIG+NV+P VKFTGK YDL Sbjct: 181 PGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 270 bits (691), Expect = 4e-72 Identities = 128/150 (85%), Positives = 137/150 (91%) Frame = +1
Query: 13 ATDEAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 192 A EAP GFTPPQL +TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA Sbjct: 55 AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 114
Query: 193 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 372 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 115 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 174
Query: 373 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 462 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 175 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 270 bits (689), Expect = 7e-72 Identities = 131/152 (86%), Positives = 139/152 (91%), Gaps = 2/152 (1%) Frame = +1
Query: 13 ATDE--APAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 186 AT+E APAGFTPPQL +TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG Sbjct: 57 ATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 116
Query: 187 AAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 366 AAIMR GPNLLKLARKEQCLALGT+LRSK+KINYQFYRVFPNGEVQYLHPKDGVYPEKVN Sbjct: 117 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 176
Query: 367 PGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 462 PGR+GVG N RSIG+N + VKFTGK YD+ Sbjct: 177 PGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 269 bits (687), Expect = 1e-71 Identities = 128/147 (87%), Positives = 135/147 (91%) Frame = +1
Query: 22 EAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 201 EAPAGF+PP+L TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR Sbjct: 61 EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
Query: 202 SGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKG 381 GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
Query: 382 VGVNLRSIGENVNPATVKFTGKNAYDL 462 VG N RSIG+NV+P VKFTGK YDL Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 266 bits (679), Expect = 1e-70 Identities = 128/152 (84%), Positives = 136/152 (89%) Frame = +1
Query: 7 STATDEAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 186 +T EAP GFTPPQL +TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG Sbjct: 53 ATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 112
Query: 187 AAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 366 AAIMR G NLLKLARKEQCLALGT+LRSK+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN Sbjct: 113 AAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVN 172
Query: 367 PGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 462 GR+GVG N RSIG+N +P VKFTGK YDL Sbjct: 173 AGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 262 bits (670), Expect = 1e-69 Identities = 124/148 (83%), Positives = 134/148 (90%) Frame = +1
Query: 19 DEAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 198 + APAGF PPQL TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIM Sbjct: 58 EPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIM 117
Query: 199 RSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRK 378 R GPNLLKLARKEQCLALG +LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+ Sbjct: 118 REGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 177
Query: 379 GVGVNLRSIGENVNPATVKFTGKNAYDL 462 GVG N RSIG+NV+P VKFTGKN++D+ Sbjct: 178 GVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 217 bits (552), Expect = 6e-56 Identities = 106/142 (74%), Positives = 118/142 (83%) Frame = +1
Query: 22 EAPAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 201 E PA +T P L DTPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR Sbjct: 49 EKPA-WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMR 107
Query: 202 SGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKG 381 GPNLLK +KEQCLAL T+LR+KFK+ FYRVFP+G+VQYLHP DGVYPEKVN GR G Sbjct: 108 QGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVG 167
Query: 382 VGVNLRSIGENVNPATVKFTGK 447 N+R IG+NVNP VKF+G+ Sbjct: 168 ANQNMRRIGQNVNPIKVKFSGR 189
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1 Length = 220
Score = 204 bits (518), Expect = 5e-52 Identities = 96/146 (65%), Positives = 118/146 (80%), Gaps = 1/146 (0%) Frame = +1
Query: 25 APAGFTPPQLKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRS 204 AP F+ P L + P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+PTGGAAIMR+ Sbjct: 70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRA 129
Query: 205 GPNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKG 381 G NLL+LARKEQC+ALG +L+ KFKI +Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR Sbjct: 130 GENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVA 189
Query: 382 VGVNLRSIGENVNPATVKFTGKNAYD 459 VG N R IG+N +PA +KF G+ +D Sbjct: 190 VGSNKRRIGQNPDPAKLKFKGQETFD 215
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 194 bits (493), Expect = 4e-49 Identities = 95/137 (69%), Positives = 110/137 (80%), Gaps = 1/137 (0%) Frame = +1
Query: 52 LKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLAR 231 L PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR G NLL LAR Sbjct: 5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLAR 64
Query: 232 KEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIG 408 KEQCLALGT++++ FKI +Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG Sbjct: 65 KEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIG 124
Query: 409 ENVNPATVKFTGKNAYD 459 +N+NPA +KFT K+ D Sbjct: 125 KNLNPAQIKFTNKSFCD 141
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL03 |
Definition |
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
147 |
Score (bit) |
281.0 |
E-value |
3.0e-74 |
Report |
|