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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948791
Clone id TST38A01NGRL0004_E01
Library
Length 682
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_E01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTACTTTGACCTATGAAGGAAGTGGGAGTTGCAGCATCTTTCCTCCCCAGCGTGAAGGG
AAGAAAAAAGTGTTGACTTCCCTTTTTTTTTTTTTGTAGGGAGAAAGGAGGTAGAGATCA
AGTAAGTGGGGCAACAACTGTCACCCCTGCCAGTTGTTCCACGTATAGGAGATAGGGATG
ACGGGATTTGAACCTGCGACATTTTGTACCCAAAACAAACACGCTACCGAGCTGCGTTAC
ATCCCTTTTGGTTGTACTTGATACCATCAACCCCTTGCTTGTTATTCGATCCAATTGATT
ATAATCTTTTCCCACGAATACTGGCTACCGTCGAAGTAGGAATGCATTTTTTGGGAAGCT
GCTAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTACACCACTTCTCG
ACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAGTAAATGTGA
GAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATAAAGGCAAGT
AGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCGACATGTAAAAATATAT
CTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGTTTATTAATA
GAAATAAATCGATTCTTTCCGG
■■Homology search results ■■ -
sp_hit_id Q85FK2
Definition sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris
Align length 34
Score (bit) 70.5
E-value 8.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948791|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_E01, 5'
         (682 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    70   8e-12
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    62   2e-09
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    62   2e-09
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    62   3e-09
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    62   3e-09
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    62   4e-09
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    62   4e-09
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    62   4e-09
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    62   4e-09
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    61   5e-09
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    60   1e-08
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    60   1e-08
sp|Q2PMR4|PSAJ_SOYBN Photosystem I reaction center subunit IX OS...    60   1e-08
sp|A4GGC6|PSAJ_PHAVU Photosystem I reaction center subunit IX OS...    60   1e-08
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    60   1e-08
sp|Q09G26|PSAJ_PLAOC Photosystem I reaction center subunit IX OS...    59   2e-08
sp|Q06FK6|PSAJ_PELHO Photosystem I reaction center subunit IX OS...    59   2e-08
sp|A4GYT1|PSAJ_POPTR Photosystem I reaction center subunit IX OS...    59   2e-08
sp|Q14FD7|PSAJ_POPAL Photosystem I reaction center subunit IX OS...    59   2e-08
sp|B1NWH0|PSAJ_MANES Photosystem I reaction center subunit IX OS...    59   2e-08
sp|B2XWM5|PSAJ_FAGEA Photosystem I reaction center subunit IX OS...    59   2e-08
sp|Q70XY6|PSAJ_AMBTC Photosystem I reaction center subunit IX OS...    59   2e-08
sp|Q0ZJ00|PSAJ_VITVI Photosystem I reaction center subunit IX OS...    59   3e-08
sp|P12193|PSAJ_TOBAC Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q2VEF8|PSAJ_SOLTU Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q2MI80|PSAJ_SOLLC Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q2MIG7|PSAJ_SOLBU Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q33C12|PSAJ_NICTO Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q3C1K9|PSAJ_NICSY Photosystem I reaction center subunit IX OS...    59   3e-08
sp|Q06RB2|PSAJ_JASNU Photosystem I reaction center subunit IX OS...    59   3e-08

>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 70.5 bits (171), Expect = 8e-12
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+HVKIYLSTAPVVATIWFGLLAGLLIEINRFFP
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 34


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+WFGLLAG+LIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINRFFP 34


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M++ K YLSTAPV+ATIWFG LAGLLIEINRFFP
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINRFFP 34


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ +K YLSTAPV+AT WFGLLAGLLIEINRFFP
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFP 34


>sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX
           OS=Cycas taitungensis GN=psaJ PE=3 SV=1
          Length = 44

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFP 34


>sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX
           OS=Psilotum nudum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFP 34


>sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX
           OS=Physcomitrella patens GN=psaJ PE=3 SV=1
          Length = 41

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFP 34


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFP 34


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFP 34


>sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX
           OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 61.2 bits (147), Expect = 5e-09
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+A IWFG+LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLAAIWFGILAGLLIEINRFFP 34
tr_hit_id Q4FFL9
Definition tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Ginkgo biloba
Align length 34
Score (bit) 62.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948791|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_E01, 5'
         (682 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    62   3e-08
tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    62   3e-08
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    62   3e-08
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    60   2e-07
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    59   2e-07
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    59   2e-07
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    59   2e-07
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    59   2e-07
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    59   2e-07
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    59   2e-07
tr|Q06R45|Q06R45_9LAMI PSI reaction center subunit IX OS=Forsyth...    59   4e-07
tr|Q06R19|Q06R19_9LAMI PSI reaction center subunit IX OS=Jasminu...    59   4e-07
tr|Q06QZ2|Q06QZ2_9LAMI PSI reaction center subunit IX OS=Jasminu...    59   4e-07
tr|Q06QW6|Q06QW6_9LAMI PSI reaction center subunit IX OS=Jasminu...    59   4e-07
tr|Q06QT7|Q06QT7_9LAMI PSI reaction center subunit IX OS=Menodor...    59   4e-07
tr|B7T2Y3|B7T2Y3_EROTE Photosystem I subunit IX OS=Erodium texan...    59   4e-07
tr|B7T2R2|B7T2R2_9ROSI Photosystem I subunit IX OS=Erodium chrys...    59   4e-07
tr|B2D073|B2D073_OLEEU Photosystem II protein J OS=Olea europaea...    59   4e-07
tr|B0LP54|B0LP54_9CARY PSI reaction centre subunit IX OS=Silene ...    59   4e-07
tr|B0LP33|B0LP33_9CARY PSI reaction centre subunit IX OS=Silene ...    59   4e-07
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    59   4e-07
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    58   5e-07
tr|B0LP12|B0LP12_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNZ4|B0LNZ4_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNX0|B0LNX0_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNU9|B0LNU9_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNS9|B0LNS9_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNQ7|B0LNQ7_SILLA PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNP3|B0LNP3_SILCO PSI reaction centre subunit IX OS=Silene ...    58   5e-07
tr|B0LNJ2|B0LNJ2_9CARY PSI reaction centre subunit IX OS=Silene ...    58   5e-07

>tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment)
           OS=Ginkgo biloba GN=psaJ PE=4 SV=1
          Length = 44

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +KIYLS APV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MRDIKIYLSVAPVLATLWFGSLAGLLIEINRFFP 34


>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ +K YLSTAPV+AT WFGLLAGLLIEINRFFP
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFP 34


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLSTAPV+AT+WFG LAGLLIEINRFFP
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFP 34


>tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX
           OS=Heliosperma alpestre GN=psaJ PE=4 SV=1
          Length = 46

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR++K YLS APV++T+WFG LAGLLIEINRFFP
Sbjct: 1   MRNIKTYLSVAPVLSTLWFGSLAGLLIEINRFFP 34


>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+++K YLSTAPV+AT+WFG LAG LIEINRFFP
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFP 34


>tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium
           cotyledonis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLS APV++TIWFG LAGLLIEINRFFP
Sbjct: 1   MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFFP 34


>tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium
           palmatum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLS APV++T+WFG LAGLLIEINRFFP
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFFP 34


>tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium
           macrorrhizum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLS APV++T+WFG LAGLLIEINRFFP
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFFP 34


>tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium
           carolinianum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           MR +K YLS APV++T+WFG LAGLLIEINRFFP
Sbjct: 1   MRDLKTYLSAAPVISTLWFGTLAGLLIEINRFFP 34


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 580 MRHVKIYLSTAPVVATIWFGLLAGLLIEINRFFP 681
           M+ VK YLSTAPV+AT+W G LAGLLIEINRFFP
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINRFFP 34