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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948810
Clone id TST38A01NGRL0004_E21
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_E21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTAGCTCGCTTTCTCCAGTTTTAATGTTCTTGGTCATTTCATAGCCTAGTTTCCACCCAT
ACAGTGTCCACCCTTCTCGTTCTCTCTCCCGAAAGGTTAATAGGGGGGACTCTCTCTCTC
TTCCTCTCTCGAGAGATCAGCTATGGGTTAAAATTTAGTGCCCACAACATGAGGAAGGAT
GAAGCAGGGCATTAGAGAAAGTCCAGGATAACCCAAAATACTAAGCTACTTCAGAAATCT
TAGTGTTAACCTTACTTTTAGGTCAGCTCTTGCAAGAAACAGGCAGCCTTTGCAAATAAA
TTTAACCTTGCTAAAGTTGCTGCTAATCACTACCCAAATTTTGTGATTCTAAGTAAGAGT
GCACTCCAACAGCTAGACAGAAATTTTCAAAGTAGTGTGAGCAAGTATGATAGATGGATG
CCCCGATGGATGGGCGGGCGGAATCCCGGTCTGCGTCCTCTCCGGCTCTGCCCAGCAGGA
CAACACCAATGTTTGTGCATCAGCTAGAGCTGCTGGTAAAGATGGAACTTTAGTGAAAGA
GAGAGACTACATCAGCCTCGGGCTGACGGGCGCAGCACCAGAACAAATGCTTACAAGTTC
CATCCCTTCTGGTGTTGATAAAATGGAGTGTGATAATGTGGTGCTAAGCCTTGGCTTAGG
CCCCCCTGCAGATAAAGCAGCAGCTGCTTCCCA
■■Homology search results ■■ -
sp_hit_id Q54Z69
Definition sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium discoideum
Align length 56
Score (bit) 32.3
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948810|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_E21, 5'
         (693 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium di...    32   2.5  
sp|Q9D6Z1|NOL5A_MOUSE Nucleolar protein 5A OS=Mus musculus GN=No...    32   2.5  
sp|Q95K50|NOL5A_MACFA Nucleolar protein 5A OS=Macaca fasciculari...    32   2.5  
sp|O00567|NOL5A_HUMAN Nucleolar protein 5A OS=Homo sapiens GN=NO...    32   2.5  
sp|Q3SZ63|NOL5A_BOVIN Nucleolar protein 5A OS=Bos taurus GN=NOL5...    32   2.5  
sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobac...    32   3.3  

>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium
           discoideum GN=rpl4 PE=3 SV=1
          Length = 369

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 280 QAAFANKFNLAKVA-ANHYPNFVILSKSALQQLDRNF----QSSVSKYDRWMPRWM 432
           + A  ++ NL K+A   H   F+I +KSA +QLD  F    +SS  K    +PR M
Sbjct: 227 EVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPM 282


>sp|Q9D6Z1|NOL5A_MOUSE Nucleolar protein 5A OS=Mus musculus GN=Nol5a
           PE=1 SV=2
          Length = 580

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 262 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 417
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|Q95K50|NOL5A_MACFA Nucleolar protein 5A OS=Macaca fascicularis
           GN=NOL5A PE=2 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 262 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 417
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|O00567|NOL5A_HUMAN Nucleolar protein 5A OS=Homo sapiens GN=NOL5A
           PE=1 SV=4
          Length = 594

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 262 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 417
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|Q3SZ63|NOL5A_BOVIN Nucleolar protein 5A OS=Bos taurus GN=NOL5A
           PE=2 SV=1
          Length = 596

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 262 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 417
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A
           OS=Mycobacterium avium GN=embA PE=3 SV=1
          Length = 1108

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
 Frame = +1

Query: 115 SLFLSREISYGLKFSAHNMRKDEAGH-----*RKSRITQNTKLLQKS*C*PYF*VSSCKK 279
           S+FL+  I  GL  +  + R D AGH      R++R+  +T LL  +       V+S  K
Sbjct: 660 SMFLTLSIITGLLAAWQHFRMDYAGHTEVKDSRRNRVLASTPLLVVATIMVVGEVASLTK 719

Query: 280 QAAF------ANKFNLAKVAANHYPNFVILSKSALQQLDRN 384
            A F        K NLA +A+   P    ++   L + D N
Sbjct: 720 GAVFRYPLYTTGKANLAAIASGLSPTSCAMADDVLAEPDAN 760
tr_hit_id A8J5T5
Definition tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas reinhardtii
Align length 84
Score (bit) 37.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948810|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_E21, 5'
         (693 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas rein...    37   1.2  
tr|Q39TW1|Q39TW1_GEOMG 4Fe-4S ferredoxin, iron-sulfur binding pr...    35   4.5  
tr|Q4XV94|Q4XV94_PLACH Putative uncharacterized protein (Fragmen...    35   6.0  
tr|Q0YNI7|Q0YNI7_9DELT 4Fe-4S ferredoxin, iron-sulfur binding OS...    34   7.7  

>tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas
           reinhardtii GN=SEC31 PE=4 SV=1
          Length = 1313

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = +2

Query: 467 SAQQDNTNVCASARAAGKDGTLVKERDYISL---------GLTGAAPEQMLTSSIPSGVD 619
           SA    T     A AAG D   ++  D +           G   A+P Q+L    P   D
Sbjct: 508 SAAGGPTENGVDAAAAGMDQLNLQNADGVPRLEVPGASVGGAVAASPHQLLAQDDPDFFD 567

Query: 620 KMECDNVVLSLGLGPPADKAAAAS 691
           K+E   VVL  GL P AD AAAA+
Sbjct: 568 KLEDTEVVLG-GLAPDADVAAAAA 590


>tr|Q39TW1|Q39TW1_GEOMG 4Fe-4S ferredoxin, iron-sulfur binding
           protein OS=Geobacter metallireducens (strain GS-15 /
           ATCC 53774 / DSM 7210) GN=Gmet_2084 PE=4 SV=1
          Length = 1014

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 542 RDYISLGLTGAAPEQMLT--SSIPSGVDKMECDNVVLSLGLGPPADKAAAAS 691
           R Y+++G    + + +    S++  GV + E D VVLS+GL PP D  A AS
Sbjct: 325 RSYVTIGREIESTKNVTIRYSTVDDGVKEEEFDMVVLSVGLNPPKDVEALAS 376


>tr|Q4XV94|Q4XV94_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000140.03.0 PE=4 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 6.0
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +1

Query: 31  WSFHSLVSTHTVSTLLVLSPERLIGGTLSLFLSREISYGLKFSAHNMRKDEAGH*RKSR 207
           +SF +L++ +T+S LL + PE +     +LF     +   K  +H++RKDEA   RK +
Sbjct: 11  YSFFALIAIYTISYLLAILPEIINSIKDALFYKTRKN---KIYSHSLRKDEASKRRKKK 66


>tr|Q0YNI7|Q0YNI7_9DELT 4Fe-4S ferredoxin, iron-sulfur binding
           OS=Geobacter sp. FRC-32 GN=GeobDRAFT_3317 PE=4 SV=1
          Length = 1018

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 542 RDYISLGLTGAAPEQMLT--SSIPSGVDKMECDNVVLSLGLGPPADKAAAAS 691
           R Y+S+G        +    S+   GV + E D VVLS+GL PPAD    A+
Sbjct: 324 RSYVSIGRENPETRNVSIRYSTFDQGVKEEEFDMVVLSVGLNPPADVQTMAT 375