DK948828 |
Clone id |
TST38A01NGRL0004_F16 |
Library |
TST38 |
Length |
496 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_F16. 5' end sequence. |
Accession |
DK948828 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL124Contig1 |
Sequence |
GTCGCCATGGCCTTGAGCGAGCTAGGGTGCACATATGCGGCGCTTATCCTGCACGACGAT AATATCGCGATCACGGCAGAGAAAATAGCAGCACTACTGAAAGCAGCAAACGTGCAAGTA GAGGCTTACTGGCCTGCGCTCTTTGCTAAGTTATTGGAAAAGCGCAGTGTCGAAGATCTG ATCACCAATGTTGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTA CCTGCTGGAGGTGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAG GAAGAAAGCGACGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCC TGATAGCCCAATTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTG AACCTTGTAATTGCCTTGCTATTCAGTAAAAAACCATGATCACTTCTCACCGACTAAAAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52855 |
Definition |
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays |
Align length |
107 |
Score (bit) |
101.0 |
E-value |
2.0e-21 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTU1 |
Definition |
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
107 |
Score (bit) |
107.0 |
E-value |
2.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948828|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_F16, 5' (457 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 107 2e-22 tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 107 3e-22 tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 106 7e-22 tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 105 1e-21 tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 104 2e-21 tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 104 2e-21 tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 104 2e-21 tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 104 2e-21 tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 103 4e-21 tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 103 4e-21 tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 103 4e-21 tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 103 4e-21 tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 102 7e-21 tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 102 7e-21 tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 101 2e-20 tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 101 2e-20 tr|A9PE33|A9PE33_POPTR Putative uncharacterized protein OS=Popul... 101 2e-20 tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 100 3e-20 tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 100 3e-20 tr|A9PA46|A9PA46_POPTR Putative uncharacterized protein OS=Popul... 100 4e-20 tr|A9P9N6|A9P9N6_POPTR Putative uncharacterized protein OS=Popul... 100 4e-20 tr|B6TBN5|B6TBN5_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 100 5e-20 tr|A9PBP0|A9PBP0_POPTR Putative uncharacterized protein OS=Popul... 100 5e-20 tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 99 1e-19 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 98 2e-19 tr|Q69UI8|Q69UI8_ORYSJ Os08g0116500 protein OS=Oryza sativa subs... 98 2e-19 tr|A2YQN3|A2YQN3_ORYSI Putative uncharacterized protein OS=Oryza... 98 2e-19 tr|A9P1V9|A9P1V9_PICSI Putative uncharacterized protein OS=Picea... 97 4e-19 tr|A9NNL8|A9NNL8_PICSI Putative uncharacterized protein OS=Picea... 97 4e-19 tr|A9P8X4|A9P8X4_POPTR Putative uncharacterized protein OS=Popul... 94 3e-18
>tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160947 PE=4 SV=1 Length = 109
Score = 107 bits (268), Expect = 2e-22 Identities = 61/107 (57%), Positives = 65/107 (60%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYA+LILHDD IAITA+KIAAL+KAANVQVE YWP LFAKL EKRSV+DLITNVG Sbjct: 5 ELACTYASLILHDDGIAITADKIAALVKAANVQVEGYWPGLFAKLCEKRSVDDLITNVGG 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGGAVAVSAAPAASAAAEAAPKEEEKKEEPKEESDDDMGFSLFD 109
>tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_164358 PE=4 SV=1 Length = 109
Score = 107 bits (267), Expect = 3e-22 Identities = 61/107 (57%), Positives = 64/107 (59%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYA LILHDD IAITA+KIAAL+KAANVQVE YWP LFAKL EKRSV+DLITNVG Sbjct: 5 ELACTYACLILHDDGIAITADKIAALVKAANVQVEGYWPGLFAKLCEKRSVDDLITNVGG 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGGAVAVSAAPAASAAAEAAPKEEEKKEEPKEESDDDMGFSLFD 109
>tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 113
Score = 106 bits (264), Expect = 7e-22 Identities = 57/109 (52%), Positives = 67/109 (61%), Gaps = 2/109 (1%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 E+ CTYAAL+LHDDNI ITAEKI+ L+KAANVQ+E+YWP LFAKL+EKR++EDLI+NVGS Sbjct: 5 EVACTYAALVLHDDNIPITAEKISTLVKAANVQIESYWPGLFAKLMEKRNIEDLISNVGS 64
Query: 181 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 GGGGASAAVAVAPSGGAGAPAAAAAPAAEEKKEEPKEESDDDMGFSLFD 113
>tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_124329 PE=4 SV=1 Length = 107
Score = 105 bits (262), Expect = 1e-21 Identities = 59/107 (55%), Positives = 64/107 (59%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYA LILHDD IAITA+KIAAL+KAANV VE YWP+LFAKL EKRSV+DL+TNVG Sbjct: 5 ELACTYACLILHDDGIAITADKIAALVKAANVSVEGYWPSLFAKLCEKRSVDDLVTNVGG 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 ----GGGAVAVSAAPAASAAVEAPKEEEKKEEPKEESDDDMGFSLFD 107
>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 104 bits (260), Expect = 2e-21 Identities = 60/107 (56%), Positives = 66/107 (61%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKRSVEDLI +VGS Sbjct: 5 ELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRSVEDLILSVGS 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGAAPVAAAAPAGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 109
>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 104 bits (260), Expect = 2e-21 Identities = 60/107 (56%), Positives = 66/107 (61%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKRSVEDLI +VGS Sbjct: 5 ELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRSVEDLILSVGS 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGAAPVAASAPAGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 109
>tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_139008 PE=4 SV=1 Length = 110
Score = 104 bits (260), Expect = 2e-21 Identities = 59/107 (55%), Positives = 64/107 (59%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYA LILHDD IAITA+KIA+L+KAANV VE YWP+LFAKL EKRSV+DLITNVG Sbjct: 5 ELACTYACLILHDDGIAITADKIASLVKAANVSVEGYWPSLFAKLCEKRSVDDLITNVGG 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 -GKCGGAAVAVSAAPASSAADEAPQVEEKKEEPKEESDDDMGFSLFD 110
>tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235143 PE=4 SV=1 Length = 110
Score = 104 bits (259), Expect = 2e-21 Identities = 59/107 (55%), Positives = 64/107 (59%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 E+ CTYA LILHDD IAITA+KIAAL+KAANV VE YWP+LFAKL EKRSVEDLITNVG Sbjct: 5 EVACTYACLILHDDGIAITADKIAALVKAANVSVEGYWPSLFAKLCEKRSVEDLITNVGG 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SD+DMGFSLFD Sbjct: 65 -GGGGAVAMSAAPAAGGAAAAVEAPKEVEKEEPKEESDEDMGFSLFD 110
>tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 103 bits (257), Expect = 4e-21 Identities = 60/107 (56%), Positives = 67/107 (62%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKR+VEDLI +VGS Sbjct: 5 ELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGS 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGAAPVAAAAPAVXAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
>tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 103 bits (257), Expect = 4e-21 Identities = 59/107 (55%), Positives = 66/107 (61%) Frame = +1
Query: 1 ELGCTYAALILHDDNIAITAEKIAALLKAANVQVEAYWPALFAKLLEKRSVEDLITNVGS 180 EL CTYAALIL DD IAITAEKIA ++KAAN++VE+YWPALFAKLLEKR+VEDLI +VGS Sbjct: 5 ELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGS 64
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 321 SDDDMGFSLFD Sbjct: 65 --GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
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