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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948873
Clone id TST38A01NGRL0004_H14
Library
Length 691
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_H14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGC
CGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTT
CTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTC
TAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGA
GACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCAT
GGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGA
GCACTTCCTTTGCAGCGGCCCCCACCCTGGGCGGTACTGGGTGATGTGGAAGAAGAACAG
GTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTA
TCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGG
CTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCAT
GAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTG
TCCCAGCCACTTTGCATACATAATGAAACAA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 152
Score (bit) 166.0
E-value 1.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948873|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_H14, 5'
         (691 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   166   1e-40
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   166   1e-40
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   166   1e-40
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   163   7e-40
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   163   7e-40
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   163   7e-40
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   163   9e-40
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   162   1e-39
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   162   2e-39
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   162   2e-39
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   162   2e-39
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   162   2e-39
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   161   3e-39
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   161   3e-39
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   161   4e-39
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   160   5e-39
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   160   5e-39
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   160   6e-39
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   160   6e-39
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   160   6e-39
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   160   6e-39
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   160   8e-39
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   160   8e-39
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   159   1e-38
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   159   1e-38
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   159   2e-38
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   159   2e-38
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   158   3e-38
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   158   3e-38

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  166 bits (420), Expect = 1e-40
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
 Frame = +2

Query: 119 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 287 QVDFMVRKGWTPCIEFD-KIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           +VD+++RK   PC+EF+ + G VYREH    G + GRYW MWK   FGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 559
           EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  166 bits (419), Expect = 1e-40
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAE 466
           +VD+++R  W PCIEF K G VYRE+    G + GRYW MWK   FGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 467 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  166 bits (419), Expect = 1e-40
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAE 466
           +VD+++R  W PCIEF K G VYRE+    G + GRYW MWK   FGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 467 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  165 bits (417), Expect = 2e-40
 Identities = 81/156 (51%), Positives = 104/156 (66%), Gaps = 5/156 (3%)
 Frame = +2

Query: 107 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 274
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 275 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVL 451
            ++K++D+++R  W PC+EF+ + G VYREH    G + GRYW MWK   FGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 452 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 559
           +E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  163 bits (413), Expect = 7e-40
 Identities = 78/148 (52%), Positives = 97/148 (65%)
 Frame = +2

Query: 116 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 295
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 296 FMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAECAK 475
           +++R GW PCIEF K+G VYRE+    G + GRYW MWK   FGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 476 EYPEAFIRVLGFDAKRQVQVSGFLVQKP 559
            YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  163 bits (413), Expect = 7e-40
 Identities = 81/157 (51%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = +2

Query: 107 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 277
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 278 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLR 454
           + K+V++++RKGW PC+EF+ + G V+R++    G + GRYW MW+   FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 455 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 565
           E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  163 bits (413), Expect = 7e-40
 Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
 Frame = +2

Query: 122 SGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFM 301
           +GLKA              +NGSRVS M VW+PY+N KFETLSYLPPLS + +AKQ+D++
Sbjct: 32  AGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYV 91

Query: 302 VRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAECAKEY 481
           ++ GW PCIEFD  G+V RE     G + GRYW MWK   FGC D+A+VLREI EC K Y
Sbjct: 92  IKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLY 151

Query: 482 -PEAFIRVLGFDAKRQVQVSGFLVQKPSV 565
             + +IR LGFD  RQVQ + F+V +P++
Sbjct: 152 GKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  163 bits (412), Expect = 9e-40
 Identities = 80/156 (51%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
 Frame = +2

Query: 116 SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 271
           +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 272 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVL 451
           EQ+ K+V++++R  W PC+EFD  GS+ R++    G + GRYWVMWK   FGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 452 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 559
            E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  162 bits (411), Expect = 1e-39
 Identities = 80/153 (52%), Positives = 102/153 (66%), Gaps = 5/153 (3%)
 Frame = +2

Query: 119 FSGLKATTLF-----APKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 283
           F+GL+++  F     A K+ + L  SNG +VS M VW P   KKFETLSYLPPLS E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 284 KQVDFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           K+VD+++R  W PCIEF K G VYRE+    G + GRYW MWK   FGC DA+ V+ E+ 
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  162 bits (410), Expect = 2e-39
 Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 287 QVDFMVRKGWTPCIEFD-KIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           +VD+++R  W PC+EF+ + G VYREH    G + GRYW MWK   FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 559
           EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 265.0
E-value 3.0e-69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948873|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_H14, 5'
         (691 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   265   3e-69
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   180   7e-44
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   180   7e-44
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   180   7e-44
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   173   8e-42
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   173   1e-41
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   173   1e-41
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   170   7e-41
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   170   9e-41
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   169   2e-40
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   169   2e-40
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   168   3e-40
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   168   3e-40
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   167   6e-40
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   167   6e-40
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   167   8e-40
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   165   2e-39
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   165   2e-39
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   165   3e-39
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   164   4e-39
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   164   4e-39
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   164   6e-39
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   163   8e-39
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   163   1e-38
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   162   1e-38
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   162   1e-38

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  265 bits (676), Expect = 3e-69
 Identities = 126/152 (82%), Positives = 138/152 (90%)
 Frame = +2

Query: 107 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAE 466
           QV++MVRKGWTPCIEFD IGSVYREHF  SG + GRYW+MWK   FGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 467 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           CAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  184 bits (467), Expect = 5e-45
 Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           DFM+++   PCIEFD +GSV R +F     SG + GRYW MWK   FGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  181 bits (459), Expect = 4e-44
 Identities = 87/153 (56%), Positives = 109/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           DFM+++   PCIEFD +GSV R +F     SG + GRYW MWK   FGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  180 bits (457), Expect = 7e-44
 Identities = 84/153 (54%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F     SG + GRYW MWK   FGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  180 bits (457), Expect = 7e-44
 Identities = 85/153 (55%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +G+V R +F     SG + GRYW MWK   FGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  180 bits (457), Expect = 7e-44
 Identities = 85/153 (55%), Positives = 109/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F     SG + GRYW MWK   FGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  177 bits (450), Expect = 4e-43
 Identities = 82/153 (53%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFL---CSGPHPGRYWVMWKKNRFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F     SG + GRYW MWK   FGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  173 bits (439), Expect = 8e-42
 Identities = 81/150 (54%), Positives = 104/150 (69%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAECA 472
           ++M+++   PC+EFD    V R +    G + GRYW MWK   FGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 473 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  173 bits (438), Expect = 1e-41
 Identities = 82/150 (54%), Positives = 104/150 (69%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAECA 472
           D+M+++   PC+EFD    V R +    G + GRYW MWK   FGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 473 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  173 bits (438), Expect = 1e-41
 Identities = 82/150 (54%), Positives = 105/150 (70%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFLCSGPHPGRYWVMWKKNRFGCQDAAAVLREIAECA 472
           ++M+++   PC+EFD    V RE+    G + GRYW MWK   FGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 473 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 562
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181