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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948881
Clone id TST38A01NGRL0004_H22
Library
Length 319
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_H22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCACAGAGGAGCATTTTGCGAGGGCTGTGTTGGCGCACGCGAGAAGTACGGCTGGGAGCA
GAGGGGGGGCTGCTTCTTCTACTTGCAATGTTGCAGACGAGATCTTTCGCGTGGTGCCCA
TCATGAGTGGCCTTGTGCTCATTGGCATCGCTCTTGGCTTTGTCCTCCTCCGAGTTGAGG
CTGCTCTTGAGGAATCTGAGTAAATTGAACCCTCTTCCTCTCTGACCCTACCTGCATTTC
TTGTCATAATTTGTAATTCCATGAAAATGTAATCAGTTCTTTTGTGAATGTGCTCAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P80883
Definition sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea
Align length 34
Score (bit) 48.1
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948881|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_H22, 5'
         (295 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment...    48   1e-05
sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7, chloropl...    32   0.97 
sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emilia...    32   1.3  
sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila me...    31   2.2  
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subuni...    30   2.9  
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom...    30   2.9  
sp|Q8DJ15|PETM_THEEB Cytochrome b6-f complex subunit 7 OS=Thermo...    30   4.8  
sp|P48366|PETM_CYAPA Cytochrome b6-f complex subunit 7 OS=Cyanop...    30   4.8  
sp|B0C6T5|PETM_ACAM1 Cytochrome b6-f complex subunit 7 OS=Acaryo...    30   4.8  
sp|Q2JS99|PETM_SYNJA Cytochrome b6-f complex subunit 7 OS=Synech...    29   6.3  
sp|Q1XDL1|PETM_PORYE Cytochrome b6-f complex subunit 7 OS=Porphy...    29   6.3  
sp|Q9TLR5|PETM_CYACA Cytochrome b6-f complex subunit 7 OS=Cyanid...    29   8.2  
sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pon...    29   8.5  
sp|P08488|GLT3_WHEAT Glutenin, high molecular weight subunit 12 ...    29   8.5  

>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment)
           OS=Spinacia oleracea GN=petM PE=1 SV=1
          Length = 36

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = +3

Query: 87  NVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           N A EIFR+  +M+GL L+G+A+GFVLLR+EA +
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATV 34


>sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7,
           chloroplastic OS=Chlamydomonas reinhardtii GN=petM PE=1
           SV=1
          Length = 99

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +3

Query: 123 MSGLVLIGIALGFVLLRVEA 182
           M G+ L+G+A+GFVLLRVE+
Sbjct: 73  MVGMTLVGLAIGFVLLRVES 92


>sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emiliania
           huxleyi GN=petM PE=3 SV=1
          Length = 32

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 90  VADEIFRVVPIMSGLVLIGIALGFVLLRVE 179
           +A EIF V  +M  LVL G+++GF LL+++
Sbjct: 1   MAKEIFTVAGVMWALVLTGLSVGFGLLKIQ 30


>sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila
           melanogaster GN=su(s) PE=1 SV=2
          Length = 1325

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +2

Query: 20  EGCVGAREKYGWEQRGG------CFFYLQ--CCRRDLSRGAHHEWPCAHWHRSWLC 163
           EG  G +EK G   R        C FYL   C +RD     H E+PC +++    C
Sbjct: 313 EGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMDC 368


>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit
           SNF5 OS=Saccharomyces cerevisiae GN=SNF5 PE=1 SV=2
          Length = 905

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -2

Query: 243 QEMQVGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*KKQPP 64
           Q+ Q   ++++ Q  Q  Q+Q Q    Q Q++ Q  QG     P+ +   Q      QPP
Sbjct: 232 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQ---IPQSQQVPQVRSMSGQPP 288

Query: 63  LCSQPYFSRAPTQPSQNAP 7
              QP   + P  P  N P
Sbjct: 289 TNVQPTIGQLPQLPKLNLP 307


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
           sapiens GN=PLA2R1 PE=1 SV=2
          Length = 1463

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 231 VGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*KKQPPLCSQ 52
           VG + + VQ+T     QP+  GG     C   +G     P  R  ++HC+  K   LC Q
Sbjct: 594 VGQKPEPVQYTHWNTHQPRYSGG-----CVAMRGRH---PLGRWEVKHCRHFKAMSLCKQ 645

Query: 51  PYFSRAPTQPSQNAP 7
           P  ++   +  +  P
Sbjct: 646 PVENQEKAEYEERWP 660


>sp|Q8DJ15|PETM_THEEB Cytochrome b6-f complex subunit 7
           OS=Thermosynechococcus elongatus (strain BP-1) GN=petM
           PE=3 SV=1
          Length = 33

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 90  VADEIFRVVPIMSGLVLIGIALGFVLLRV 176
           +A+EIF    I   LVL+G+  G++LLR+
Sbjct: 1   MAEEIFNTAVITFTLVLVGLGAGYLLLRL 29


>sp|P48366|PETM_CYAPA Cytochrome b6-f complex subunit 7
           OS=Cyanophora paradoxa GN=petM PE=3 SV=1
          Length = 33

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 99  EIFRVVPIMSGLVLIGIALGFVLLRVE 179
           +IF    I   L LIG++LGFVLL+++
Sbjct: 4   QIFNTAVICFTLTLIGLSLGFVLLKIQ 30


>sp|B0C6T5|PETM_ACAM1 Cytochrome b6-f complex subunit 7
           OS=Acaryochloris marina (strain MBIC 11017) GN=petM PE=3
           SV=1
          Length = 32

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 90  VADEIFRVVPIMSGLVLIGIALGFVLLRV 176
           +A EIF    +   L+L+GI LG++LL+V
Sbjct: 1   MAGEIFTTAFLCFSLILVGIGLGYLLLKV 29


>sp|Q2JS99|PETM_SYNJA Cytochrome b6-f complex subunit 7
           OS=Synechococcus sp. (strain JA-3-3Ab) GN=petM PE=3 SV=1
          Length = 35

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 90  VADEIFRVVPIMSGLVLIGIALGFVLLRV 176
           +A EIF +  +   L L+G+ALG+ +LR+
Sbjct: 1   MASEIFTIAGLSIVLTLVGVALGYGILRI 29
tr_hit_id A9TM48
Definition tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 60.5
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948881|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_H22, 5'
         (295 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs...    55   2e-06
tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ...    52   1e-05
tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic...    52   1e-05
tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome...    50   4e-05
tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    50   7e-05
tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    49   1e-04
tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul...    48   2e-04
tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido...    46   0.001
tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz...    46   0.001
tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho...    39   0.099
tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt...    37   0.64 
tr|Q9XFU3|Q9XFU3_9CHLO Putative uncharacterized protein OS=Chlam...    34   3.2  
tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub...    34   4.1  
tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub...    34   4.1  
tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04...    34   4.1  
tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=...    34   4.1  
tr|Q7Y0K2|Q7Y0K2_LOPEL X-type HMW glutenin subunit Ee2.1 OS=Loph...    33   5.4  
tr|Q19A59|Q19A59_LOPEL High molecular weight glutenin x-type sub...    33   5.4  
tr|Q5KA01|Q5KA01_CRYNE Ubiquitin-specific protease, putative OS=...    33   5.4  
tr|Q0ZB32|Q0ZB32_9POAL High molecular weight glutenin x subunit ...    33   7.0  
tr|B6LVT9|B6LVT9_BRAFL Putative uncharacterized protein OS=Branc...    33   9.2  

>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1
          Length = 90

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 52  CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 86


>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1
          Length = 112

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 74  CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108


>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CNVA EI  +VPIMS LVLIG+A+GFVLLRVEAA+
Sbjct: 90  CNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124


>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0079B15.15 PE=4 SV=1
          Length = 118

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CN A EIFR+  IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 80  CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13659 PE=4 SV=1
          Length = 118

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CN A EIFR+  IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 80  CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001
           PE=4 SV=1
          Length = 201

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CN   EIFR+  IM+GLVL+G+A+GFVLLR+EA++
Sbjct: 163 CNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASV 197


>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027615 PE=4 SV=1
          Length = 126

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CN   EIFR+  IM+GLVL+G+A+GFVLLR+EA++
Sbjct: 88  CNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASV 122


>tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 127

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           CN A EIF++  IM+GL L+G+A+GFVLLR+EAA+
Sbjct: 89  CNAAGEIFQIAAIMNGLTLVGVAVGFVLLRIEAAV 123


>tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014735001
           PE=4 SV=1
          Length = 122

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 84  CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           C+ A EIFR+  IM+ LVLIG+A+GFVLLR+EA++
Sbjct: 84  CSAASEIFRIAAIMNALVLIGVAVGFVLLRIEASV 118


>tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
           mays PE=4 SV=1
          Length = 117

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +3

Query: 87  NVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 188
           N A EIFR+   M+GLVL+G+A+GFVLLRVEAA+
Sbjct: 80  NAAAEIFRIAATMNGLVLVGVAVGFVLLRVEAAV 113