DK948889 |
Clone id |
TST38A01NGRL0004_I06 |
Library |
TST38 |
Length |
674 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_I06. 5' end sequence. |
Accession |
DK948889 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1668Contig1 |
Sequence |
TAGAGTGTAAAATTTCTGCTCCAGCGTGCGGATCCAGCAAGAAGAGCCTCCTCTTAAGCG TCTAATTGTAACCGGAACAGCTTCGATCCCTCTCTTTCTCTGCAGATCATGACCATCATG CACGTACTTTCCCCTCAGGGCGCAAAAGCTTCTTAAACAGTGCTTCCCACCCTTCAGCAC AGCGTGCCTCCATCGACTACCGCTCCAGAATGGTTGTCTTAGCTGCCTCCATCATTACCA AAACGGGCAAAGCCCTGGTATCACGTCAATTCGTGGAAATGACAAGGATAAGGATCGAGG GTCTCTTAGCTGCTTTCCCAAAGCTTGTGGGGACTGGCAAACAGCATACTTATGTTGAAA CAGAGAATGTTCGATATGTTTATCAACCTATTGAGCTGCTATACCTTCTGTTGGTCACAA ACAGGCAAAGCAACATTTTAGAAGATTTGGAAATGTTGAGACTTTTATCAAAAATTGTTC CTGAATACTGCCCTAGTCTAGACGAAGATGGCATTTGCAAGGTGGCATTTGAACTGATAT TTGCTTTCGATGAAGCCATTTCACTTGGCCACAAGGAGAATGTTACGGTTACTGATGTAA AGCAGTACATTGAGATGGAAAGTCATGAAGAGAGACTCCACAATATGATTGTACAAAGCA AAATAAATGAAACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0DJA0 |
Definition |
sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica |
Align length |
155 |
Score (bit) |
262.0 |
E-value |
1.0e-69 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5B542 |
Definition |
tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
155 |
Score (bit) |
263.0 |
E-value |
7.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948889|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_I06, 5' (674 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis... 263 7e-69 tr|A3B2G5|A3B2G5_ORYSJ Putative uncharacterized protein OS=Oryza... 263 7e-69 tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays PE=2 SV=1 262 2e-68 tr|A7P2Q5|A7P2Q5_VITVI Chromosome chr1 scaffold_5, whole genome ... 261 3e-68 tr|B6TDR8|B6TDR8_MAIZE Coatomer subunit delta OS=Zea mays PE=2 SV=1 260 5e-68 tr|B4G0V4|B4G0V4_MAIZE Putative uncharacterized protein OS=Zea m... 260 5e-68 tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea... 259 8e-68 tr|B8AWD9|B8AWD9_ORYSI Putative uncharacterized protein OS=Oryza... 259 8e-68 tr|B7EGT8|B7EGT8_ORYSJ cDNA clone:J023027K10, full insert sequen... 259 8e-68 tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella paten... 257 5e-67 tr|A9RGU9|A9RGU9_PHYPA Predicted protein OS=Physcomitrella paten... 254 3e-66 tr|A8I901|A8I901_CHLRE Delta-cop OS=Chlamydomonas reinhardtii GN... 244 3e-63 tr|Q94IK3|Q94IK3_SCHDU Coatomer delta subunit OS=Scherffelia dub... 224 3e-57 tr|A9RI77|A9RI77_PHYPA Predicted protein OS=Physcomitrella paten... 212 2e-53 tr|B8ABP1|B8ABP1_ORYSI Putative uncharacterized protein OS=Oryza... 202 1e-50 tr|A2ZZA4|A2ZZA4_ORYSJ Putative uncharacterized protein OS=Oryza... 201 3e-50 tr|Q91W48|Q91W48_MOUSE Archain 1 OS=Mus musculus GN=Arcn1 PE=2 SV=1 200 6e-50 tr|Q8C0G7|Q8C0G7_MOUSE Putative uncharacterized protein OS=Mus m... 200 6e-50 tr|Q16JS6|Q16JS6_AEDAE Coatomer delta subunit OS=Aedes aegypti G... 200 6e-50 tr|Q6P1Q5|Q6P1Q5_HUMAN ARCN1 protein OS=Homo sapiens GN=ARCN1 PE... 200 6e-50 tr|B0YIW5|B0YIW5_HUMAN Coatomer subunit delta variant 1 (Archain... 200 6e-50 tr|Q7ZW27|Q7ZW27_DANRE Archain 1 OS=Danio rerio GN=arcn1 PE=2 SV=1 200 8e-50 tr|B6L4A9|B6L4A9_BRAFL Putative uncharacterized protein OS=Branc... 199 1e-49 tr|B0XDC3|B0XDC3_CULQU Coatomer subunit delta OS=Culex quinquefa... 199 1e-49 tr|Q7T0U9|Q7T0U9_XENLA Arcn1 protein OS=Xenopus laevis GN=arcn1 ... 199 2e-49 tr|Q28E96|Q28E96_XENTR Archain 1 (Archain) OS=Xenopus tropicalis... 199 2e-49 tr|B0YIW6|B0YIW6_HUMAN Coatomer subunit delta variant 2 (Archain... 198 2e-49 tr|B3MR25|B3MR25_DROAN GF21077 OS=Drosophila ananassae GN=GF2107... 198 3e-49 tr|Q7ZU89|Q7ZU89_DANRE Archain 1 like OS=Danio rerio GN=arcn1l P... 197 4e-49 tr|B5X2H8|B5X2H8_SALSA Coatomer subunit delta OS=Salmo salar GN=... 197 4e-49
>tr|A5B542|A5B542_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008875 PE=4 SV=1 Length = 531
Score = 263 bits (672), Expect = 7e-69 Identities = 131/155 (84%), Positives = 143/155 (92%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASI++K+GK LVSRQFV+MTRIRIE LLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKVLVSRQFVDMTRIRIEALLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 IE LYLLLVTN+QSNILEDLE LRLLSK+VPEY SLDE+G+CK AFELIFAFDE ISLG Sbjct: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSVSLDEEGVCKTAFELIFAFDEVISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 HKENVTV VKQY EMESHEE+LH +++QSKINET Sbjct: 121 HKENVTVAQVKQYCEMESHEEKLHKLVLQSKINET 155
>tr|A3B2G5|A3B2G5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017237 PE=4 SV=1 Length = 1330
Score = 263 bits (672), Expect = 7e-69 Identities = 131/156 (83%), Positives = 147/156 (94%) Frame = +3
Query: 207 RMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 386 +MVVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ Sbjct: 285 KMVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 344
Query: 387 PIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISL 566 PIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFELIFAFDEAISL Sbjct: 345 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISL 404
Query: 567 GHKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 G+KENVTV VKQY EMESHEE+ H +++QSKINET Sbjct: 405 GNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINET 440
Score = 262 bits (669), Expect = 2e-68 Identities = 132/166 (79%), Positives = 150/166 (90%) Frame = +3
Query: 177 AQRASIDYRSRMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYV 356 +QRA + + VVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYV Sbjct: 796 SQRARLVAANYQVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYV 855
Query: 357 ETENVRYVYQPIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFEL 536 ETENVRYVYQPIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFEL Sbjct: 856 ETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFEL 915
Query: 537 IFAFDEAISLGHKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 IFAFDEAI LG+KENVTV VKQY EMESHEE+ H +++QSKINET Sbjct: 916 IFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINET 961
>tr|Q9M640|Q9M640_MAIZE Delta-COP OS=Zea mays PE=2 SV=1 Length = 523
Score = 262 bits (669), Expect = 2e-68 Identities = 130/155 (83%), Positives = 146/155 (94%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDEDGICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEDGICKTAFEIIFAFDEAISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 +KENVTV VKQY EMESHEE+ H +++Q+KINET Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQAKINET 155
>tr|A7P2Q5|A7P2Q5_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030145001 PE=4 SV=1 Length = 568
Score = 261 bits (667), Expect = 3e-68 Identities = 130/154 (84%), Positives = 142/154 (92%) Frame = +3
Query: 213 VVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 392 VVLAASI++K+GK LVSRQFV+MTRIRIE LLAAFPKLVGTGKQHTYVETENVRYVYQPI Sbjct: 39 VVLAASIVSKSGKVLVSRQFVDMTRIRIEALLAAFPKLVGTGKQHTYVETENVRYVYQPI 98
Query: 393 ELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLGH 572 E LYLLLVTN+QSNILEDLE LRLLSK+VPEY SLDE+G+CK AFELIFAFDE ISLGH Sbjct: 99 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSVSLDEEGVCKTAFELIFAFDEVISLGH 158
Query: 573 KENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 KENVTV VKQY EMESHEE+LH +++QSKINET Sbjct: 159 KENVTVAQVKQYCEMESHEEKLHKLVLQSKINET 192
>tr|B6TDR8|B6TDR8_MAIZE Coatomer subunit delta OS=Zea mays PE=2 SV=1 Length = 517
Score = 260 bits (665), Expect = 5e-68 Identities = 129/155 (83%), Positives = 146/155 (94%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+GICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGICKTAFEIIFAFDEAISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 +KENVTV VKQY EMESHEE+ H +++Q+KINET Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQTKINET 155
>tr|B4G0V4|B4G0V4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 516
Score = 260 bits (665), Expect = 5e-68 Identities = 129/155 (83%), Positives = 146/155 (94%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASI++K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 IE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+GICK AFE+IFAFDEAISLG Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGICKTAFEIIFAFDEAISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 +KENVTV VKQY EMESHEE+ H +++Q+KINET Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQTKINET 155
>tr|B8LLU4|B8LLU4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 529
Score = 259 bits (663), Expect = 8e-68 Identities = 125/155 (80%), Positives = 145/155 (93%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAAS+ TKTGKALVSRQFV+MTRIRIEGLLAAFPKLVG+GKQHTY+ETENVRYVYQP Sbjct: 1 MVVLAASVTTKTGKALVSRQFVDMTRIRIEGLLAAFPKLVGSGKQHTYIETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 +E LYLLL+TN+QSNIL+DL+ LRLLSK+VPEY P LDE+GIC++AFE+IFAFDEAI+LG Sbjct: 61 MESLYLLLITNKQSNILQDLDTLRLLSKLVPEYSPELDEEGICRMAFEIIFAFDEAIALG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 H ENVT+ +KQY EMESHEERLH +I+QSKI+ET Sbjct: 121 HNENVTIMQIKQYCEMESHEERLHKLIMQSKIDET 155
>tr|B8AWD9|B8AWD9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19411 PE=4 SV=1 Length = 607
Score = 259 bits (663), Expect = 8e-68 Identities = 130/165 (78%), Positives = 149/165 (90%) Frame = +3
Query: 180 QRASIDYRSRMVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVE 359 +R + + +VVLAASII+K+GKALVSRQFV+M+RIRIEGLLAAFPKLVGTGKQHTYVE Sbjct: 75 RRDILTFALLLVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVE 134
Query: 360 TENVRYVYQPIELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELI 539 TENVRYVYQPIE LYLLL+TN+QSNILEDL+ LRLLSK+VPEY PSLDE+G+CK AFELI Sbjct: 135 TENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELI 194
Query: 540 FAFDEAISLGHKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 FAFDEAI LG+KENVTV VKQY EMESHEE+ H +++QSKINET Sbjct: 195 FAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINET 239
>tr|B7EGT8|B7EGT8_ORYSJ cDNA clone:J023027K10, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 518
Score = 259 bits (663), Expect = 8e-68 Identities = 127/155 (81%), Positives = 146/155 (94%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASII+K+GKALVSRQFV+M+RIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 IE LYLLL+TN+QSNILEDL+ LRLLSK++PEY PSLDE+G+CK AFEL+FAF EAISLG Sbjct: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 +KENVTV VKQY EMESHEE+LH +++QSKINET Sbjct: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINET 155
>tr|A9RMY5|A9RMY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_204046 PE=4 SV=1 Length = 521
Score = 257 bits (656), Expect = 5e-67 Identities = 126/155 (81%), Positives = 144/155 (92%) Frame = +3
Query: 210 MVVLAASIITKTGKALVSRQFVEMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 389 MVVLAASII+K+GKALVSRQ+V+M+RIRIEGLLA FPKLVG GKQHTYVET+NVRYVYQP Sbjct: 1 MVVLAASIISKSGKALVSRQYVDMSRIRIEGLLATFPKLVGIGKQHTYVETDNVRYVYQP 60
Query: 390 IELLYLLLVTNRQSNILEDLEMLRLLSKIVPEYCPSLDEDGICKVAFELIFAFDEAISLG 569 +E LYLLLVTN+QSNILED + L+LLSK+VPEY PSLDE+GICK+AFE+IFAFDE ISLG Sbjct: 61 MESLYLLLVTNKQSNILEDRDTLQLLSKLVPEYVPSLDEEGICKMAFEIIFAFDEVISLG 120
Query: 570 HKENVTVTDVKQYIEMESHEERLHNMIVQSKINET 674 HKENVT+ VKQY+EMESHEERLH I++SKINET Sbjct: 121 HKENVTIAQVKQYVEMESHEERLHKRIMESKINET 155
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