DK948893 |
Clone id |
TST38A01NGRL0004_I11 |
Library |
TST38 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_I11. 5' end sequence. |
Accession |
DK948893 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL549Contig1 |
Sequence |
TAATTCTACTCTGGCTTCTGTGAAGGTTGTTACGAGTGCACACCCTGCACCGACTCTACC TACCCACCGGGTAAATGATGTGAAAGACAGTGCCCGCCCTGGTACCGAAAGAGTTCTAAA GAAAGACGTCTCTTTTAGCTCTGTTGTGTCAAATGGGCAAGAGAGTGGGTCTCTACCAAA GTCTCAGCCGTTTATGAAGCCGCTTACTGTGGTAGCCAGTAAGGAGTCTTGCTCTTGTCT TCCCAATGGCGAGAGATACAATTCAGAAGACTTTGTGACAAAGTATGATGATGCGAAGCA CTTCATAATTAAGTCATACAGTGAGGAGAATGTATTCAGAAGCATTCAGTATGGAGTTTG GGCCAGCACTCCCAATGGAAACCCCACATTGGATGATGCCTATCATGATGCTCAACGCCG AGCAGCGGGAAAGCCAAATGGTTGCCCCGTTTTCCTATATTTTTCGGTCAATGGAAGCAG GCAGTTTTGTGGCGTTGCTGAGATGACCGGGCCTGTTGATTATAAGAGGAGCATGGAGTT TTGGGAACAGCACAAGTGGAGTGGCTCATTCCCCTTGAAGTGGCATTTTATAAAGGATGT CCCAAACTCGCAATTTCGAAGAATTATACTACAGAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P59326 |
Definition |
sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus |
Align length |
204 |
Score (bit) |
136.0 |
E-value |
8.0e-32 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NVV9 |
Definition |
tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
129 |
Score (bit) |
194.0 |
E-value |
3.0e-48 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948893|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_I11, 5' (638 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome ... 194 3e-48 tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis... 194 3e-48 tr|A7QP53|A7QP53_VITVI Chromosome chr1 scaffold_136, whole genom... 189 9e-47 tr|Q9LUT8|Q9LUT8_ARATH Arabidopsis thaliana genomic DNA, chromos... 188 3e-46 tr|Q1JPL5|Q1JPL5_ARATH At3g17330 OS=Arabidopsis thaliana PE=2 SV=1 188 3e-46 tr|Q0WPP4|Q0WPP4_ARATH Putative uncharacterized protein At3g1733... 188 3e-46 tr|A8MPR6|A8MPR6_ARATH Uncharacterized protein At3g17330.2 OS=Ar... 188 3e-46 tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequen... 187 5e-46 tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subu... 187 5e-46 tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequen... 187 5e-46 tr|A2ZWJ5|A2ZWJ5_ORYSJ Putative uncharacterized protein OS=Oryza... 187 5e-46 tr|A2WTS8|A2WTS8_ORYSI Putative uncharacterized protein OS=Oryza... 187 5e-46 tr|A7Q4I8|A7Q4I8_VITVI Chromosome chr9 scaffold_49, whole genome... 186 1e-45 tr|A5B5J0|A5B5J0_VITVI Putative uncharacterized protein OS=Vitis... 186 1e-45 tr|B4FF31|B4FF31_MAIZE Putative uncharacterized protein OS=Zea m... 185 2e-45 tr|A7QMM3|A7QMM3_VITVI Chromosome chr19 scaffold_126, whole geno... 182 1e-44 tr|A5ACY6|A5ACY6_VITVI Putative uncharacterized protein OS=Vitis... 182 1e-44 tr|B8AMZ5|B8AMZ5_ORYSI Putative uncharacterized protein OS=Oryza... 182 1e-44 tr|Q10MA6|Q10MA6_ORYSJ Os03g0317000 protein OS=Oryza sativa subs... 182 2e-44 tr|A3AHC9|A3AHC9_ORYSJ Putative uncharacterized protein OS=Oryza... 182 2e-44 tr|Q0WTC7|Q0WTC7_ARATH Putative uncharacterized protein At5g5819... 181 3e-44 tr|Q9LVM8|Q9LVM8_ARATH Similarity to unknown protein OS=Arabidop... 181 4e-44 tr|Q9FPE7|Q9FPE7_ARATH Putative uncharacterized protein At1g7927... 181 4e-44 tr|Q8VYH3|Q8VYH3_ARATH Putative uncharacterized protein (At5g581... 181 4e-44 tr|Q3E899|Q3E899_ARATH Uncharacterized protein At5g58190.2 OS=Ar... 181 4e-44 tr|O64526|O64526_ARATH YUP8H12R.13 protein OS=Arabidopsis thalia... 181 4e-44 tr|Q9LDZ8|Q9LDZ8_ARATH Gb|AAF35955.1 OS=Arabidopsis thaliana PE=... 180 7e-44 tr|Q3EB75|Q3EB75_ARATH Uncharacterized protein At3g13060.1 OS=Ar... 180 7e-44 tr|Q0WR25|Q0WR25_ARATH Putative uncharacterized protein At3g1306... 180 7e-44 tr|B4FBI4|B4FBI4_MAIZE Putative uncharacterized protein OS=Zea m... 179 1e-43
>tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019682001 PE=4 SV=1 Length = 416
Score = 194 bits (494), Expect = 3e-48 Identities = 85/129 (65%), Positives = 105/129 (81%) Frame = +2
Query: 251 ERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAG 430 ++YN +DF Y DAK F+IKSYSE++V +SI+Y VW+STPNGN L++AY DAQR A G Sbjct: 63 DQYNKDDFPVDYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALG 122
Query: 431 KPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNS 610 K GCP+FL+FSVN S QFCGVAEM GPVD+ + M+FW+Q KWSGSFP+KWH IKDVPN+ Sbjct: 123 KRRGCPIFLFFSVNASGQFCGVAEMIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNT 182
Query: 611 QFRRIILQN 637 FR IIL+N Sbjct: 183 NFRHIILEN 191
>tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038412 PE=4 SV=1 Length = 1960
Score = 194 bits (494), Expect = 3e-48 Identities = 85/129 (65%), Positives = 105/129 (81%) Frame = +2
Query: 251 ERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAG 430 ++YN +DF Y DAK F+IKSYSE++V +SI+Y VW+STPNGN L++AY DAQR A G Sbjct: 371 DQYNKDDFPVDYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALG 430
Query: 431 KPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNS 610 K GCP+FL+FSVN S QFCGVAEM GPVD+ + M+FW+Q KWSGSFP+KWH IKDVPN+ Sbjct: 431 KRRGCPIFLFFSVNASGQFCGVAEMIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNT 490
Query: 611 QFRRIILQN 637 FR IIL+N Sbjct: 491 NFRHIILEN 499
>tr|A7QP53|A7QP53_VITVI Chromosome chr1 scaffold_136, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002804001 PE=4 SV=1 Length = 323
Score = 189 bits (481), Expect = 9e-47 Identities = 91/165 (55%), Positives = 113/165 (68%) Frame = +2
Query: 143 VVSNGQESGSLPKSQPFMKPLTVVASKESCSCLPNGERYNSEDFVTKYDDAKHFIIKSYS 322 + N S PK++ V SK + E YN DFVT+Y DAK F+IKSYS Sbjct: 32 IEQNRGPRASKPKNRTTANESFVNNSKNGTCTGVHRESYNRLDFVTEYKDAKFFVIKSYS 91
Query: 323 EENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAGKPNGCPVFLYFSVNGSRQFCGVAE 502 E+NV +SI+YGVW STPNGN L+ A+H+A+ K CP+FL FSVN S QFCGVAE Sbjct: 92 EDNVHKSIKYGVWVSTPNGNKRLNSAFHEAKE----KHGNCPIFLLFSVNASAQFCGVAE 147
Query: 503 MTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNSQFRRIILQN 637 M GPVDY +S+++W+Q KW+G FP+KWH IKDVPNSQFR IIL+N Sbjct: 148 MVGPVDYDKSVDYWKQDKWTGQFPVKWHIIKDVPNSQFRHIILEN 192
>tr|Q9LUT8|Q9LUT8_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8 OS=Arabidopsis thaliana PE=4 SV=1 Length = 1455
Score = 188 bits (477), Expect = 3e-46 Identities = 85/131 (64%), Positives = 100/131 (76%) Frame = +2
Query: 245 NGERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRA 424 N +RYN EDF +Y DA+ F+IKSYSE++V +SI+YGVW+ST NGN L Y DAQR A Sbjct: 1106 NPDRYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIA 1165
Query: 425 AGKPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVP 604 K CP+FL+FSVN S FCGVAEMTGPV + R M+FW+Q KWSGSFP+KWH IKDVP Sbjct: 1166 TEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVP 1225
Query: 605 NSQFRRIILQN 637 NS FR IIL N Sbjct: 1226 NSYFRHIILHN 1236
>tr|Q1JPL5|Q1JPL5_ARATH At3g17330 OS=Arabidopsis thaliana PE=2 SV=1 Length = 595
Score = 188 bits (477), Expect = 3e-46 Identities = 85/131 (64%), Positives = 100/131 (76%) Frame = +2
Query: 245 NGERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRA 424 N +RYN EDF +Y DA+ F+IKSYSE++V +SI+YGVW+ST NGN L Y DAQR A Sbjct: 254 NPDRYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIA 313
Query: 425 AGKPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVP 604 K CP+FL+FSVN S FCGVAEMTGPV + R M+FW+Q KWSGSFP+KWH IKDVP Sbjct: 314 TEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVP 373
Query: 605 NSQFRRIILQN 637 NS FR IIL N Sbjct: 374 NSYFRHIILHN 384
>tr|Q0WPP4|Q0WPP4_ARATH Putative uncharacterized protein At3g17330 OS=Arabidopsis thaliana GN=At3g17330 PE=2 SV=1 Length = 595
Score = 188 bits (477), Expect = 3e-46 Identities = 85/131 (64%), Positives = 100/131 (76%) Frame = +2
Query: 245 NGERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRA 424 N +RYN EDF +Y DA+ F+IKSYSE++V +SI+YGVW+ST NGN L Y DAQR A Sbjct: 254 NPDRYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIA 313
Query: 425 AGKPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVP 604 K CP+FL+FSVN S FCGVAEMTGPV + R M+FW+Q KWSGSFP+KWH IKDVP Sbjct: 314 TEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVP 373
Query: 605 NSQFRRIILQN 637 NS FR IIL N Sbjct: 374 NSYFRHIILHN 384
>tr|A8MPR6|A8MPR6_ARATH Uncharacterized protein At3g17330.2 OS=Arabidopsis thaliana GN=At3g17330 PE=4 SV=1 Length = 493
Score = 188 bits (477), Expect = 3e-46 Identities = 85/131 (64%), Positives = 100/131 (76%) Frame = +2
Query: 245 NGERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRA 424 N +RYN EDF +Y DA+ F+IKSYSE++V +SI+YGVW+ST NGN L Y DAQR A Sbjct: 152 NPDRYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIA 211
Query: 425 AGKPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVP 604 K CP+FL+FSVN S FCGVAEMTGPV + R M+FW+Q KWSGSFP+KWH IKDVP Sbjct: 212 TEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVP 271
Query: 605 NSQFRRIILQN 637 NS FR IIL N Sbjct: 272 NSYFRHIILHN 282
>tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-2 PE=2 SV=1 Length = 609
Score = 187 bits (475), Expect = 5e-46 Identities = 84/129 (65%), Positives = 101/129 (78%) Frame = +2
Query: 251 ERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAG 430 + YN DFVTKYD A F+IKSYSE+++ +SI+Y VWASTPNGN LD+A+ AQ R A Sbjct: 353 DAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAE 412
Query: 431 KPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNS 610 K CP+FL+FSVN S QFCGVAEM GPVD+ R+M FW+Q KW+G FP+KWH IKDVPN Sbjct: 413 KGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNP 472
Query: 611 QFRRIILQN 637 QFR IIL+N Sbjct: 473 QFRHIILEN 481
>tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subunit-like OS=Oryza sativa subsp. japonica GN=B1144G04.45-1 PE=4 SV=1 Length = 598
Score = 187 bits (475), Expect = 5e-46 Identities = 84/129 (65%), Positives = 101/129 (78%) Frame = +2
Query: 251 ERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAG 430 + YN DFVTKYD A F+IKSYSE+++ +SI+Y VWASTPNGN LD+A+ AQ R A Sbjct: 342 DAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAE 401
Query: 431 KPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNS 610 K CP+FL+FSVN S QFCGVAEM GPVD+ R+M FW+Q KW+G FP+KWH IKDVPN Sbjct: 402 KGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNP 461
Query: 611 QFRRIILQN 637 QFR IIL+N Sbjct: 462 QFRHIILEN 470
>tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-3 PE=2 SV=1 Length = 458
Score = 187 bits (475), Expect = 5e-46 Identities = 84/129 (65%), Positives = 101/129 (78%) Frame = +2
Query: 251 ERYNSEDFVTKYDDAKHFIIKSYSEENVFRSIQYGVWASTPNGNPTLDDAYHDAQRRAAG 430 + YN DFVTKYD A F+IKSYSE+++ +SI+Y VWASTPNGN LD+A+ AQ R A Sbjct: 202 DAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAE 261
Query: 431 KPNGCPVFLYFSVNGSRQFCGVAEMTGPVDYKRSMEFWEQHKWSGSFPLKWHFIKDVPNS 610 K CP+FL+FSVN S QFCGVAEM GPVD+ R+M FW+Q KW+G FP+KWH IKDVPN Sbjct: 262 KGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNP 321
Query: 611 QFRRIILQN 637 QFR IIL+N Sbjct: 322 QFRHIILEN 330
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