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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948911
Clone id TST38A01NGRL0004_J06
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_J06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGAGGATGAAGGCGGGCGCCGTTCTACAAAGCAAGGCGCCATGAATGCTCGGGGCTTGTT
GCGTAGTTCAGGACGAGCCCTGTAGCCCTACTGTGCAAGGCATCGAATCATCGATTCGTT
TTTTGCTGTGCATCCCGAGGATGAAGGCGGCCTTGATTAACGATGATGCAGAAGGGCTGC
GATGTCTGCTTGCTGGGGATGCTCTGTGCGCATTGAATGCCTCATGGGAGAGTCCTTTTC
AACGCGTACAGCTTTTTGCGCCTACTGTGTTGCTCACAACCTACTGAGAACTTGCCAATT
GGTGCTGCGAACAGTAGTGTGTGCTTGTATAAGAGGAGGTGGTCGCCTCTTTCTCTCTCC
ATCTAAGTCTGCCTCTTTGTCTCCCTTTGAATGCGTGAGAGCATCTTGAGTGTGAGTGTT
GATGGCTTGCAACCGGGACAATTGTTGTTCGTGTGCTGGCAAAGCGGAAGAATTGTGCAT
CAGCAATGGTGATTCTCTCGGAGCTGAGAGCATGGACTTCGAAGGGGGTGAGCTCCATTG
AAGGTTTTCTTTTATTTGATGCTTTGTAAACCTATTCTGGCGAAGTATTCGAGCATCTCT
GTGTCGAAATTGCGGATCTGATGTGCTTCATTCCTAGCAAGAAACGATATAATATCTGTA
TCGTTGATGTAAT
■■Homology search results ■■ -
sp_hit_id Q37871
Definition sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82
Align length 41
Score (bit) 31.2
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948911|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_J06, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=n...    31   5.2  
sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage...    30   8.9  

>sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=ninE
           PE=3 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 571 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTR 449
           +YK  N+RK   EL P E+  L     ++ D ++ R A+ R
Sbjct: 13  IYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARR 53


>sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage
           DLP12 OS=Escherichia coli (strain K12) GN=ninE PE=3 SV=1
          Length = 56

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 571 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTRT 446
           +Y+  N+RK   EL P E+  L     ++ D ++ R A+ R+
Sbjct: 13  IYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRS 54
tr_hit_id B0CW92
Definition tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 126
Score (bit) 37.4
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948911|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_J06, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (st...    37   0.86 
tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    37   0.87 
tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    36   1.9  
tr|Q4CL20|Q4CL20_TRYCR Putative uncharacterized protein OS=Trypa...    36   2.5  
tr|B6L034|B6L034_BRAFL Putative uncharacterized protein OS=Branc...    35   3.3  
tr|Q6GLY8|Q6GLY8_XENLA MGC84110 protein OS=Xenopus laevis GN=MGC...    35   5.6  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   5.6  
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   5.6  
tr|Q4SVD5|Q4SVD5_TETNG Chromosome undetermined SCAF13763, whole ...    34   7.4  
tr|B0W766|B0W766_CULQU Putative uncharacterized protein OS=Culex...    34   7.4  
tr|A8NIA6|A8NIA6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   7.4  
tr|A8WGH8|A8WGH8_XENTR LOC100127703 protein (Fragment) OS=Xenopu...    34   9.6  
tr|B6LDJ4|B6LDJ4_BRAFL Putative uncharacterized protein OS=Branc...    34   9.6  

>tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322427 PE=4 SV=1
          Length = 194

 Score = 37.4 bits (85), Expect = 0.86
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
 Frame = -3

Query: 623 HQIRNFDTEMLEYFARIGLQSIK*KKTFNGAH---PLRSPCSQLRENHHC*C-TILPLCQ 456
           H++R  + E L  F        + K+  N AH   PLR   SQ    HH  C T +    
Sbjct: 79  HRLRRQEGEALFGFKA----KARDKQLVNNAHRRNPLRHKASQAPLPHHAMCETSMNRSD 134

Query: 455 HTNNNCPGCKPSTLTLKMLSRIQRETKRQT*MERERGDHLLLYKHTLLFAAPIGKFSVGC 276
               NC GC      L  L R    + RQT +  E G H+L  +     ++P G  S G 
Sbjct: 135 RRERNCCGCA----RLLGLPR----SPRQTLVNPEEGSHILWRREHYAGSSPFGLTSSGH 186

Query: 275 EQHSRR 258
             H  R
Sbjct: 187 RTHFTR 192


>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 37.4 bits (85), Expect = 0.87
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 528  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINT-HTQDALTHSKGDKEADLDGER 352
            PPS S+ S PR SP L  +SS+ PA ++    LQAI+T  + D     KGD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 351  KRRPPP 334
                 P
Sbjct: 1238 TAEQEP 1243


>tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_186956 PE=4 SV=1
          Length = 940

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = -2

Query: 564 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLS----RLQAINTHTQDAL 397
           +H +   LQ  +    ++ S   +  LL +    +P    ++S    RL   +  T+D  
Sbjct: 557 RHVLDSELQQRACEFFALASRSDDDELLQNICEEMPPFPPRVSALLGRLNRKHGDTEDKR 616

Query: 396 THSKGDKEADLDGERKRRPPPLIQAHTTVRSTNWQVLSRL*ATQ*AQKAVRVEKDSPMRH 217
           T   G KEA+LD E  +R   L++ + T  S N  ++  L     +  +++    SP  +
Sbjct: 617 TWIHGGKEANLDREATKRKTFLVENNGTASSDNQGIMDSLAGLDMSSPSIQAIGSSPQEY 676


>tr|Q4CL20|Q4CL20_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053445553.10 PE=4 SV=1
          Length = 514

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 29/84 (34%), Positives = 42/84 (50%)
 Frame = -2

Query: 591 RILRQNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINTH 412
           R LR++R T+ Q  ENL  S+P + S  SA R+          +P+  ++ +    IN H
Sbjct: 287 RFLRRDR-TETQTTENLTPSAPTTTSQPSAERK--------EMVPSPMRRSNHKVRINIH 337

Query: 411 TQDALTHSKGDKEADLDGERKRRP 340
             DA +    D E + DGE K RP
Sbjct: 338 DHDAYS----DVEVEGDGETKLRP 357


>tr|B6L034|B6L034_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_117415 PE=4 SV=1
          Length = 2765

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
 Frame = -2

Query: 543  LQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINTHTQDALTH--------S 388
            L +SSPP+   +  PR     +  S  L  ++   S +Q+  TH Q   TH         
Sbjct: 2518 LTFSSPPAPVHMGGPRADTSPVSTSGQLQRNQAAPSHVQSTPTHVQSTPTHVQPSLNPAG 2577

Query: 387  KGDKEADLDGERKRRPPPLIQAHTTVRSTN 298
               +         R  PP+  A TTV S++
Sbjct: 2578 SASQPLPASSSSSRPNPPVTTAATTVASSS 2607


>tr|Q6GLY8|Q6GLY8_XENLA MGC84110 protein OS=Xenopus laevis
           GN=MGC84110 PE=2 SV=1
          Length = 434

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -2

Query: 558 QIKENLQWSSPPSKSM----LSAPRESPLLMHNSSALPAHEQQLSRLQAINTHTQ 406
           +I  N  +S  PS+      +S P+ES LL  NSS  P+H QQ++   + N H +
Sbjct: 43  KIATNSSYSCKPSEVQSILNISPPQESELLNENSSPPPSHSQQINLGPSSNPHAK 97


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -2

Query: 528 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 430
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 513  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINTHTQDALTHSKGDKEADLDGE 355
            +LS P  SP L+ N   LPA     SRL  ++    +A + + GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|Q4SVD5|Q4SVD5_TETNG Chromosome undetermined SCAF13763, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00012036001 PE=4 SV=1
          Length = 2594

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -2

Query: 582 RQNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLS--RLQAINTHT 409
           R+ R  + Q +E    +   ++  L A R+  L  H    L AH Q+L   R Q +  H 
Sbjct: 529 RKERSFQTQPQEQEVQAHLRAEQELQAHRQEELQAHRQQELQAHRQELQAHRQQELQAHR 588

Query: 408 QDALTHSKGDKEADLDGERKRRPPPLIQAH 319
           Q+   H + + +A    E +      +QAH
Sbjct: 589 QELQAHRQQELQAHRQQELQAHRQEELQAH 618


>tr|B0W766|B0W766_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ002932 PE=4 SV=1
          Length = 432

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
 Frame = -2

Query: 546 NLQWSSPPSKSMLS-APRESPLLMHNSSALPAH--EQQLSRLQAINTHT--QDALTHSKG 382
           N Q SSPP  S  S +P  SP ++ +++A P H  E+ LS LQ + T    Q  L   + 
Sbjct: 43  NDQPSSPPLSSASSRSPSTSPPVVASTTATPNHLSEEHLSLLQLLATAAVAQQHLQLQQQ 102

Query: 381 DKEADL-----DGERKRRPPPLIQAHTTVRSTN 298
            K A             +PPP I  +T   STN
Sbjct: 103 QKSASSILSSPPASHPPQPPPAIVQNTNQNSTN 135