DK948915 |
Clone id |
TST38A01NGRL0004_J10 |
Library |
TST38 |
Length |
683 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_J10. 5' end sequence. |
Accession |
DK948915 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL378Contig1 |
Sequence |
CGGGGAGCCCCGAGCCCGACAGCCACAGCCATGGCTGCAGCAGTCAAGCTCACTTCCTCT TCTGTGGCTTCTTCCCCCACCATGCAGCCCCTGTATCTGCGAACAGGTTTCCATGGTTCC TCTTTACCGTCCTCCTCCTTCTCGGCTACACCTGCTTCAACAGGTAGCAGCTACAAGCTG GTCGTGTGCATGGCTTCCTCCACAGATCAGCCGATAATCATAGGGCTTGCTGCAGACTCT GGATGTGGAAAGAGTACATTCATGCGGCGGTTGACGAGCGTCTTCGGGGGTGCTGCGTCC CCTCCCAAGGGGGGTAACCCAGACTCCAACACTCTGATCAGTGACACCACTACTGTGATA TGCTTGGATGATTACCATTCTCTGGACCGCACCGGTCGAAAGCAGAAGGGTGTTACAGCG CTTGACCCTCGGGCGAACAACTTTGATCTCATGTATGAACAGGTGAAGGCGATTAAAGAA GGGAAGTCCATTGAGAAGCCCATCTACAACCATGTGACAGGCCTTTTGGATCCTCCGGAA ACTATCCAGCCCCCCAAAATTTTTGTCATTGAGGGCCTGCATCCCATGTTTGATGCACGA GTTCGCGAGCTTTTAGATTTCAGCATCTACCTTGACATCAGTGATGAGGTGAAGTTTGCC TGGAAAATACAGCGAGATATGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
164 |
Score (bit) |
306.0 |
E-value |
5.0e-83 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948915|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_J10, 5' (683 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 306 5e-83 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 301 3e-81 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 292 1e-78 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 290 6e-78 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 264 4e-70 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 218 2e-56 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 115 3e-25 sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (str... 73 2e-12 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 72 4e-12 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 70 1e-11 sp|Q8Y727|URK_LISMO Uridine kinase OS=Listeria monocytogenes GN=... 69 2e-11 sp|A0AIU6|URK_LISW6 Uridine kinase OS=Listeria welshimeri serova... 69 2e-11 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 68 4e-11 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 68 4e-11 sp|A8YU29|URK_LACH4 Uridine kinase OS=Lactobacillus helveticus (... 68 4e-11 sp|P67414|URK_STRR6 Uridine kinase OS=Streptococcus pneumoniae (... 68 5e-11 sp|P67413|URK_STRPN Uridine kinase OS=Streptococcus pneumoniae G... 68 5e-11 sp|Q04KA9|URK_STRP2 Uridine kinase OS=Streptococcus pneumoniae s... 68 5e-11 sp|Q71ZH3|URK_LISMF Uridine kinase OS=Listeria monocytogenes ser... 68 5e-11 sp|A8AWT2|URK_STRGC Uridine kinase OS=Streptococcus gordonii (st... 67 7e-11 sp|Q88WR0|URK_LACPL Uridine kinase OS=Lactobacillus plantarum GN... 67 7e-11 sp|Q8XJI6|URK_CLOPE Uridine kinase OS=Clostridium perfringens GN... 65 3e-10 sp|Q0TPI4|URK_CLOP1 Uridine kinase OS=Clostridium perfringens (s... 65 3e-10 sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium GN=... 65 4e-10 sp|P67409|URK_SALTI Uridine kinase OS=Salmonella typhi GN=udk PE... 65 4e-10 sp|A9N7M0|URK_SALPB Uridine kinase OS=Salmonella paratyphi B (st... 65 4e-10 sp|Q5PDX6|URK_SALPA Uridine kinase OS=Salmonella paratyphi A GN=... 65 4e-10 sp|Q57MN1|URK_SALCH Uridine kinase OS=Salmonella choleraesuis GN... 65 4e-10 sp|P27515|URK1_YEAST Uridine kinase OS=Saccharomyces cerevisiae ... 65 4e-10 sp|Q8E0A8|URK_STRA5 Uridine kinase OS=Streptococcus agalactiae s... 64 6e-10
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 306 bits (785), Expect = 5e-83 Identities = 147/164 (89%), Positives = 158/164 (96%) Frame = +1
Query: 190 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 369 ++ + +QPI+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 51 VSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 110
Query: 370 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 549 DYHSLDRTGRK+KGVTALDP+AN+FDLMYEQVKAIKEGK+IEKPIYNHVTGLLDP E IQ Sbjct: 111 DYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQ 170
Query: 550 PPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 PPKIFVIEGLHPM+D RVRELLDFSIYLDIS+EVKFAWKIQRDM Sbjct: 171 PPKIFVIEGLHPMYDERVRELLDFSIYLDISNEVKFAWKIQRDM 214
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 301 bits (770), Expect = 3e-81 Identities = 144/168 (85%), Positives = 159/168 (94%) Frame = +1
Query: 178 LVVCMASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTV 357 ++ C+A + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTV Sbjct: 41 VITCLAGDS-QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTV 99
Query: 358 ICLDDYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPP 537 ICLDDYHSLDRTGRK+KGVTALDPRAN+FDLMYEQVKA+KEGK++EKPIYNHVTGLLD P Sbjct: 100 ICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAP 159
Query: 538 ETIQPPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 E I+PPKI VIEGLHPMFD+RVR+LLDFSIYLDIS+EVKFAWKIQRDM Sbjct: 160 ELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDM 207
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 292 bits (748), Expect = 1e-78 Identities = 140/161 (86%), Positives = 152/161 (94%) Frame = +1
Query: 199 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 378 S Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 379 SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPK 558 SLDR GRK + VTALDP+AN+FDLMYEQVKA+KEGK+++KPIYNHV+GLLDPPE IQPPK Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171
Query: 559 IFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 I VIEGLHPM+DARVRELLDFSIYLDIS+EVKFAWKIQRDM Sbjct: 172 ILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDM 212
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 290 bits (741), Expect = 6e-78 Identities = 139/164 (84%), Positives = 151/164 (92%) Frame = +1
Query: 190 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 369 + + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 43 LITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 102
Query: 370 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 549 DYHSLDR GRK++ VTALDPRAN+FDLMYEQVKA+K G ++EKPIYNHVTGLLDPPE IQ Sbjct: 103 DYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQ 162
Query: 550 PPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 PPKI VIEGLHPMFD RVR+LLDFSIYLDIS+EVKFAWKIQRDM Sbjct: 163 PPKILVIEGLHPMFDERVRDLLDFSIYLDISNEVKFAWKIQRDM 206
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 264 bits (674), Expect = 4e-70 Identities = 123/159 (77%), Positives = 137/159 (86%) Frame = +1
Query: 205 DQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSL 384 D+ ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDYH L Sbjct: 34 DKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCL 93
Query: 385 DRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPKIF 564 DR GRK KGVTAL P A NFDLMY QVKA+KEGKS++KPIYNHV+GL+D PE I+ P I Sbjct: 94 DRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPIL 153
Query: 565 VIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 VIEGLHP +D RV ELLDF IYLDISD++KFAWKIQRDM Sbjct: 154 VIEGLHPFYDKRVAELLDFKIYLDISDDIKFAWKIQRDM 192
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 218 bits (556), Expect = 2e-56 Identities = 105/164 (64%), Positives = 124/164 (75%) Frame = +1
Query: 190 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 369 M + D+ ++IG+A DSGCGKSTF+RRLT +FG + TVICLD Sbjct: 1 MTTQLDRVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLD 43
Query: 370 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 549 DYHSLDR GRK GVTALDPRANNFDLMYEQ+K +K G+SI KPIYNH TGLLDPPE ++ Sbjct: 44 DYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVE 103
Query: 550 PPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 P K+ VIEGLHP++D RVREL+DF +YLDIS+EVK WKIQRDM Sbjct: 104 PNKVVVIEGLHPLYDERVRELVDFGVYLDISEEVKINWKIQRDM 147
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 115 bits (287), Expect = 3e-25 Identities = 57/66 (86%), Positives = 59/66 (89%) Frame = +1
Query: 271 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKQKGVTALDPRANNFDL 450 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHSLDR GVTALDPRAN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDL 54
Query: 451 MYEQVK 468 MYEQVK Sbjct: 55 MYEQVK 60
>sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (strain DSM 20016) GN=udk PE=3 SV=1 Length = 218
Score = 72.8 bits (177), Expect = 2e-12 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Frame = +1
Query: 208 QPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHS-- 381 +P++IG+ SG GK+T ++ G A +I D Y++ Sbjct: 8 RPVVIGVTGGSGSGKTTVSNKIYDQLHGQA-----------------IQIINQDTYYNDQ 50
Query: 382 LDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLL-DPPETIQPPK 558 D T ++K V P A + D + +Q+ ++ K+IE P+Y++ D ++P Sbjct: 51 SDMTMDERKAVNYDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTRSDKTVHVEPTD 110
Query: 559 IFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 + ++EG+ + D R+R+L+D +Y+D D+++ +IQRDM Sbjct: 111 VIILEGILILDDERLRDLMDIKVYVDTDDDIRIIRRIQRDM 151
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 71.6 bits (174), Expect = 4e-12 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 7/160 (4%) Frame = +1
Query: 190 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 369 M ++ P++IG+A + CGKST + R+ N ++N S I Sbjct: 1 MKNTLKLPLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHL 48
Query: 370 DYHSLDRTGRKQKGVTALDPRAN-------NFDLMYEQVKAIKEGKSIEKPIYNHVTGLL 528 HS R ++ + A + + N NFDL+ E ++ + +GK++E P Y+ +T + Sbjct: 49 SLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSM 108
Query: 529 DPPETIQPPKIFVIEGLHPMFDARVRELLDFSIYLDISDE 648 + T++P K+ +IEG+ ++D RVR+LL ++++ + E Sbjct: 109 NGTVTVEPAKVIIIEGILLLYDERVRKLLSTKLFVEKNAE 148
>sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE=3 SV=1 Length = 209
Score = 69.7 bits (169), Expect = 1e-11 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Frame = +1
Query: 202 TDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH- 378 T +PI++G+ SG GK++ + + F G + +I D Y+ Sbjct: 2 TKKPIVVGVTGGSGSGKTSVTKAICDHFSG-----------------HSILMIAQDVYYH 44
Query: 379 -SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPP 555 D + ++ V P A + DL+ + A++ ++IEKPIY++ IQ P Sbjct: 45 DQADISFEERLKVNYDHPLAFDTDLLISHIAALRRYETIEKPIYDYEKYTRKQEVEIQEP 104
Query: 556 K-IFVIEGLHPMFDARVRELLDFSIYLDISDEVKFAWKIQRDM 681 + + ++EG+ + D R+R+L+D +Y+D D+++F ++ RDM Sbjct: 105 REVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDM 147
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GRU9 |
Definition |
tr|Q8GRU9|Q8GRU9_ORYSI Phosphoribulokinase OS=Oryza sativa subsp. indica |
Align length |
164 |
Score (bit) |
313.0 |
E-value |
5.0e-84 |
Report |
|