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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948923
Clone id TST38A01NGRL0004_J18
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_J18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTGATGTGGAATTCGGTGATGAAGAAATGAACGATAATGCTGATAATGCAAACAAAGAAA
AAAACGACCAAGAGCTGAAGCTTCAATCGCTTGAATCAATGGGGTTTATGGATCGTGAGC
TGAATGCTGTTCTCTTGAGCAAGAATGACGGGAATGTGCAACTTGTTCTGGACGATCTTT
TAGTTGCAGCTGGATGGGATGGGGCGTTTGAGGATCTCCGAGAGATGGGATTCACTGATC
AGGCGACAAATGTGAGATTGCTTTTGAAGCACAAGGGGAGTGTCAAAGCTGCAGTGAGAG
ATTTGGTGCAGAAGGGGAAGCAGAAAGCTTAAGTTGCAAAGGCTTGCGATGTATCAACTA
TTTGAATAAAGGATGCTGCAGTAGCAATATCCAGTAGCTGAGGATTGTCCGAGTTTTAGC
TAGTAGTTGGCATGGAATTGTAACTGGGTTTGGCTTTGTGAGCTGACATGACATTGGGTC
TCTGCCCTTTTCTATGGTTATTGTCCGTTTTGT
■■Homology search results ■■ -
sp_hit_id Q1PEU9
Definition sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270 OS=Arabidopsis thaliana
Align length 38
Score (bit) 30.4
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948923|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_J18, 5'
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270 OS=Ar...    30   5.0  
sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio r...    30   5.1  
sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norveg...    30   6.5  
sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculu...    30   8.5  
sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapien...    30   8.5  
sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio r...    30   8.7  

>sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270
           OS=Arabidopsis thaliana GN=At2g43270 PE=2 SV=1
          Length = 208

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 242 GDKCEIAFEAQGECQSCSERFGAEGEAESLSCKGLRCI 355
           GD+ E+ FE + E Q        +    SL+C+GL CI
Sbjct: 57  GDRTELGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCI 94


>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio
           rerio GN=tcf7l1a PE=2 SV=1
          Length = 560

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 255 SHLSPDQ*IPSLGDPQTPHPIQL 187
           SHLSP+   P  G P+TPHP +L
Sbjct: 191 SHLSPEILDPKTGIPRTPHPSEL 213


>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus
            GN=Nbr1 PE=1 SV=1
          Length = 983

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 216  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 305
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 941  LFEMGFCDRQLNLRLLRKHNHNILQVVTEL 970


>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus
            GN=Nbr1 PE=2 SV=1
          Length = 988

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 216  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 305
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 946  LFEMGFCDRQLNLRLLRKHNYNILQVVTEL 975


>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens
            GN=NBR1 PE=1 SV=2
          Length = 966

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 216  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 305
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 924  LFEMGFCDRQLNLRLLKKHNYNILQVVTEL 953


>sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio
           rerio GN=tcf7l1b PE=2 SV=1
          Length = 551

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 255 SHLSPDQ*IPSLGDPQTPHPIQL 187
           +HLSP+   P  G P+TPHP +L
Sbjct: 189 AHLSPEILDPKTGIPRTPHPAEL 211
tr_hit_id A9SHX9
Definition tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 75
Score (bit) 56.6
E-value 7.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948923|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_J18, 5'
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella paten...    57   7e-07
tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g2469...    52   1e-05
tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g2469...    52   1e-05
tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum ...    51   3e-05
tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Popul...    48   2e-04
tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa su...    48   3e-04
tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subs...    48   3e-04
tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosu...    47   4e-04
tr|A7PCR7|A7PCR7_VITVI Chromosome chr17 scaffold_12, whole genom...    41   0.039
tr|B6SNC6|B6SNC6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.087
tr|Q4UIY1|Q4UIY1_THEAN Ubiquitin-related chaperonin, putative OS...    36   1.3  
tr|Q4N6N3|Q4N6N3_THEPA Putative uncharacterized protein OS=Theil...    36   1.3  
tr|Q9SII9|Q9SII9_ARATH Putative ubiquitin-like protein OS=Arabid...    35   1.6  
tr|Q9SII8|Q9SII8_ARATH Putative ubiquitin-like protein OS=Arabid...    35   1.6  
tr|Q94C51|Q94C51_ARATH Putative ubiquitin protein OS=Arabidopsis...    35   1.6  
tr|Q5ALM2|Q5ALM2_CANAL Putative uncharacterized protein SAC3 OS=...    34   4.8  
tr|Q8S474|Q8S474_MAIZE Putative pol protein (Fragment) OS=Zea ma...    33   6.4  

>tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212537 PE=4 SV=1
          Length = 732

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 30/75 (40%), Positives = 40/75 (53%)
 Frame = +3

Query: 81  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRL 260
           L++L+SMGF  R+ N +LL KN                     E+L EMGF D   N +L
Sbjct: 645 LETLDSMGFKQRDFNQMLLKKNEYDLQRTLDDLVMAAERESLLEELEEMGFYDTNLNRQL 704

Query: 261 LLKHKGSVKAAVRDL 305
           +LKH GSVK  V++L
Sbjct: 705 MLKHNGSVKRVVKEL 719


>tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g24690
           OS=Arabidopsis thaliana GN=F22K18.110 PE=2 SV=1
          Length = 704

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 37/75 (49%)
 Frame = +3

Query: 81  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRL 260
           L+ LE MGF + +LN  +L  N                     E+L+EMGF D  TN RL
Sbjct: 623 LKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRL 682

Query: 261 LLKHKGSVKAAVRDL 305
           L K+ GS+K  V DL
Sbjct: 683 LKKNNGSIKGVVMDL 697


>tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g24690
           OS=Arabidopsis thaliana GN=At4g24690 PE=4 SV=1
          Length = 83

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 37/75 (49%)
 Frame = +3

Query: 81  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRL 260
           L+ LE MGF + +LN  +L  N                     E+L+EMGF D  TN RL
Sbjct: 2   LKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRL 61

Query: 261 LLKHKGSVKAAVRDL 305
           L K+ GS+K  V DL
Sbjct: 62  LKKNNGSIKGVVMDL 76


>tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum
            aestivum GN=UBA PE=2 SV=1
          Length = 870

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 30/79 (37%), Positives = 38/79 (48%)
 Frame = +3

Query: 69   QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAT 248
            +E  LQ LE MGF   +LN  +L +N                      +L EMGF D+ T
Sbjct: 784  EEKLLQELEEMGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELNEMGFDDRET 843

Query: 249  NVRLLLKHKGSVKAAVRDL 305
            N  LL K+ GS+K AV DL
Sbjct: 844  NKELLAKNGGSIKRAVMDL 862


>tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122833 PE=4 SV=1
          Length = 89

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +3

Query: 81  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRL 260
           L +LESMGF  R++N  +L KN                     E+L EMGF D   N  L
Sbjct: 2   LATLESMGFKQRDVNQEVLKKNGNDLQRTLDDLVMAVEWDPMLEELEEMGFYDTDMNRLL 61

Query: 261 LLKHKGSVKAAVRDL 305
           + K+ GS+K  V++L
Sbjct: 62  MFKNNGSIKRVVKEL 76


>tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 324

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +3

Query: 81  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRL 260
           L+ LE MGF   +LN  +L +N                     E+L+EMGF+D+  N +L
Sbjct: 244 LKDLEEMGFKQVDLNKEILRRNEYDLEQSVDDLCGFAEWDPILEELQEMGFSDKEMNKKL 303

Query: 261 LLKHKGSVKAAVRDL 305
           L K+ GS++  V D+
Sbjct: 304 LKKNNGSIRGVVMDI 318


>tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa
           subsp. japonica GN=ta4 PE=2 SV=1
          Length = 208

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = +3

Query: 69  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAT 248
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 122 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 181

Query: 249 NVRLLLKHKGSVKAAVRDL 305
           N  +L K+ GS+K AV DL
Sbjct: 182 NKEMLEKNGGSIKRAVMDL 200


>tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1067_B01.6-1 PE=2 SV=1
          Length = 845

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = +3

Query: 69  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAT 248
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 759 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 818

Query: 249 NVRLLLKHKGSVKAAVRDL 305
           N  +L K+ GS+K AV DL
Sbjct: 819 NKEMLEKNGGSIKRAVMDL 837


>tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07886 PE=4 SV=1
          Length = 845

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = +3

Query: 69  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAT 248
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 759 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 818

Query: 249 NVRLLLKHKGSVKAAVRDL 305
           N  +L K+ GS+K AV DL
Sbjct: 819 NKEMLEKNGGSIKRAVMDL 837


>tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosus
           PE=2 SV=1
          Length = 309

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 27/79 (34%), Positives = 39/79 (49%)
 Frame = +3

Query: 69  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAT 248
           +E+ L+ LE MGF   +LN  +L +N                      +L EMGF D+  
Sbjct: 223 EEVMLKELEEMGFKQIDLNKEVLRQNKYDLDQSVGDLCGFSEWDPLLIELEEMGFADKER 282

Query: 249 NVRLLLKHKGSVKAAVRDL 305
           N ++L K+ GS+K AV DL
Sbjct: 283 NKKMLEKNGGSIKRAVMDL 301