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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948945
Clone id TST38A01NGRL0004_K17
Library
Length 685
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_K17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCTCTGTGGCTTCTTTGGCAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTATCTA
AGAGCTTCTCCGGCCTCAGGCCCACTACCCTCGCTGCCCCCAAGAGCGCCAACCCGCTCT
CCATCTCCAACGGCAGCCGCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGA
AGTTCGAGACTCTGTCCTACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGGTGG
ACTTCATGGTCCGGAAGGGCTGGACCCCCTGCATTGAGTTCGACAAAATCGGAAGCGTAT
ACCGAGAGCACTTCCATGGCAGCGGCTACTACGATGGGCGATACTGGGTGATGTGGAAGT
TGCCCATGTTTGGCTGCCAAGATGCCGCCGCTGTGCTGCGTGAAATTGCAGAGTGCGCCA
AGGAGTACCCCGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCCNAGAGGCAGGTGCAGG
TCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAGAAATCAATGATTTATCCTCGGAGAC
AACGACNATGCGTTCGTAGCCCTTTTTTCTCTCAAGGAGACCTTGTGAACATACACTTTT
GTAACGATGAGGCACATCACCAAATTTTAATTCATCTCTNTTAAGAGCCTTGTTTCTGTA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 174
Score (bit) 186.0
E-value 7.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948945|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_K17, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   186   7e-47
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   186   1e-46
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   186   1e-46
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   184   4e-46
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   184   5e-46
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   184   5e-46
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   183   6e-46
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   181   2e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   181   2e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   181   3e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   181   4e-45
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   180   5e-45
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   179   9e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   179   1e-44
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   179   2e-44
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   179   2e-44
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   178   3e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   178   3e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   176   7e-44
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   176   7e-44

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  186 bits (473), Expect = 7e-47
 Identities = 90/174 (51%), Positives = 117/174 (67%), Gaps = 6/174 (3%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAESLSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKP 167
           S +++A    + +   SL+  F+GL+     P T  A    + L  SNG RV  M VW P
Sbjct: 5   SSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPP 63

Query: 168 YDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRY 344
              KK+ETLSYLPPL+ E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRY
Sbjct: 64  IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRY 123

Query: 345 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 506
           W MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 124 WTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  186 bits (471), Expect = 1e-46
 Identities = 93/176 (52%), Positives = 118/176 (67%), Gaps = 7/176 (3%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAESLSKSF------SGLRPTTLAAPKSANPLSISNGSRVSAMLVWKP 167
           VAS AV  P  A A S +KS       +GL+             + +NGSRVS M VW+P
Sbjct: 5   VASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEP 64

Query: 168 YDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYW 347
           Y+N KFETLSYLPPL+ + +AKQ+D++++ GW PCIEFD  G+V RE     GYYDGRYW
Sbjct: 65  YNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYW 124

Query: 348 VMWKLPMFGCQDAAAVLREIAECAKEY-PEAFIRVLGFDAXRQVQVSGFLVQKPSV 512
            MWKLPMFGC D+A+VLREI EC K Y  + +IR LGFD  RQVQ + F+V +P++
Sbjct: 125 TMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  186 bits (471), Expect = 1e-46
 Identities = 92/178 (51%), Positives = 120/178 (67%), Gaps = 10/178 (5%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAESLSKSFSGLRPTTLAAPKSANPLS----------ISNGSRVSAM 152
           + A  AVAAPS     ++  +F+GL+  ++A   S+  +S           SNGSRV  M
Sbjct: 11  TAAVAAVAAPSKTGNSNVVSAFTGLK--SMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCM 68

Query: 153 LVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYY 332
            VW PY NKKFETLSYLP LT EQ+ K+V+++++  W PC+EF++ G + R + +  GYY
Sbjct: 69  QVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYY 128

Query: 333 DGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 506
           DGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 129 DGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  184 bits (467), Expect = 4e-46
 Identities = 92/173 (53%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAE-SLSKSFSGLRPTT--LAAPKSANPLSI-SNGSRVSAMLVWKPYD 173
           ++S AVA  S  PA+ S+   F+GL+ T    A  K+ +  S+ SNG RV  M VW   +
Sbjct: 6   LSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQN 65

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKI-GSVYREHFHGSGYYDGRYWV 350
            K++ETLSYLPPLT++Q+A+QVD+++   W PC+EF+   G VYREH +  GYYDGRYW 
Sbjct: 66  MKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWT 125

Query: 351 MWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 126 MWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  184 bits (466), Expect = 5e-46
 Identities = 90/174 (51%), Positives = 121/174 (69%), Gaps = 5/174 (2%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAES-LSKSFSGLRPTT-LAAPKSANPLS--ISNGSRVSAMLVWKPYD 173
           ++S AV   + AP ++ L+  F+GL+ +      K  N ++   SNGSRV+ M VW P  
Sbjct: 4   ISSAAVTTINRAPVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVG 63

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWV 350
            KKFETLSYLPPLT EQ+ K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW 
Sbjct: 64  KKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWT 123

Query: 351 MWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPSV 512
           MW+LP+FG  DAA VL+E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 124 MWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  184 bits (466), Expect = 5e-46
 Identities = 92/172 (53%), Positives = 113/172 (65%), Gaps = 4/172 (2%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAESLSKSFSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYD 173
           +AS A  A +     S+   F+GLR +    A  K+ N LS   SNG RVS M VW P  
Sbjct: 6   MASTAAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEG 65

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVM 353
            KKFETLSYLPPL+ E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW M
Sbjct: 66  LKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125

Query: 354 WKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           WKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD  RQVQ   F+  KP+
Sbjct: 126 WKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  183 bits (465), Expect = 6e-46
 Identities = 93/177 (52%), Positives = 120/177 (67%), Gaps = 9/177 (5%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAES-LSKSFSGLR-----PTTLAAPKSANPLSI--SNGSRVSAMLV 158
           S++S        APA++ +   F+GL+     PTT    K AN  S   SNG RV  M V
Sbjct: 3   SISSSVATVSRTAPAQANMVAPFTGLKSNAAFPTT----KKANDFSTLPSNGGRVQCMKV 58

Query: 159 WKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYD 335
           W P   KK+ETLSYLPPLT  Q+AK+VD+++RK W PC+EF+ + G VYRE+    GYYD
Sbjct: 59  WPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYD 118

Query: 336 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 506
           GRYW MWKLPMFGC D+A V++E+AEC KEYP+A+IR++GFD  RQVQ   F+  +P
Sbjct: 119 GRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  182 bits (463), Expect = 1e-45
 Identities = 91/172 (52%), Positives = 112/172 (65%), Gaps = 4/172 (2%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAESLSKSFSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYD 173
           +AS A A     PA++    F+  R +    A  K+ N LS   SNG RVS M VW P  
Sbjct: 6   MASTAAAVARAGPAQTNMVPFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEG 65

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVM 353
            KKFETLSYLPPL+ E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW M
Sbjct: 66  LKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125

Query: 354 WKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           WKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD  RQVQ   F+  KP+
Sbjct: 126 WKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  182 bits (462), Expect = 1e-45
 Identities = 86/164 (52%), Positives = 113/164 (68%)
 Frame = +3

Query: 15  LAVAAPSCAPAESLSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETL 194
           +A +A S AP + L KS +GL    ++   +A+  S+SNG R+  M VW     KKFETL
Sbjct: 6   MASSATSVAPFQGL-KSTAGL---PVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETL 61

Query: 195 SYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 374
           SYLPPL++E + KQVD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPMFG
Sbjct: 62  SYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFG 121

Query: 375 CQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 506
           C DA  VL E+ E  KEYP+A++R++GFD  RQVQ   F+  KP
Sbjct: 122 CTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165


>sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 91/172 (52%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
 Frame = +3

Query: 6   VASLAVAAPSCAPAESLSKSFSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYD 173
           +AS A A     PA+S    F+  R +    A  K+ N LS    NG RVS M VW P  
Sbjct: 6   MASTAAAVARAGPAQSSMVPFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEG 65

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVM 353
            KKFETLSYLPPL+ E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW M
Sbjct: 66  LKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125

Query: 354 WKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           WKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD  RQVQ   F+  KP+
Sbjct: 126 WKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 169
Score (bit) 300.0
E-value 5.0e-80
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948945|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_K17, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   300   5e-80
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   208   3e-52
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   207   5e-52
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   201   3e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   200   6e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   200   6e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   192   2e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   191   4e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   188   3e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   183   9e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|Q9FRZ2|Q9FRZ2_WHEAT Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q2QTJ7|Q2QTJ7_ORYSJ Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q9SBU5|Q9SBU5_9POAL Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|Q9SNZ6|Q9SNZ6_9POAL Ribulose bisphosphate carboxylase small c...   181   3e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  300 bits (768), Expect = 5e-80
 Identities = 142/169 (84%), Positives = 158/169 (93%), Gaps = 1/169 (0%)
 Frame = +3

Query: 6   VASLAVAAPSCAPA-ESLSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKK 182
           +A++AV+APSCA A ESLSKSFSGL+  TL APK ANPL+ISNGSR+SAMLVWKPYDNKK
Sbjct: 5   LAAMAVSAPSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKK 64

Query: 183 FETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKL 362
           FETLSYLPPLT++QIAKQV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKL
Sbjct: 65  FETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKL 124

Query: 363 PMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           PMFGC D+ +VLREIAECAKEYP AFIRVLGFDA RQVQV+GFLV+KPS
Sbjct: 125 PMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  208 bits (529), Expect = 3e-52
 Identities = 102/173 (58%), Positives = 126/173 (72%), Gaps = 4/173 (2%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAESLS-KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNK 179
           SV+ +A A+P+    ES S K FSGL+ TTL+A K+    S+ NGSRV  M VW P    
Sbjct: 7   SVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQP 66

Query: 180 KFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWV 350
           KFET SYLPPLT +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW 
Sbjct: 67  KFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWT 126

Query: 351 MWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           MWKLPMFGC D+A VLREI EC + +P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 127 MWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  207 bits (527), Expect = 5e-52
 Identities = 102/173 (58%), Positives = 125/173 (72%), Gaps = 4/173 (2%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAESLS-KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNK 179
           SV+ +A A+P+    ES S K FSGL+ TTL A K+    S+ NGSRV  M VW P    
Sbjct: 7   SVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQP 66

Query: 180 KFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWV 350
           KFET SYLPPLT +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW 
Sbjct: 67  KFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWT 126

Query: 351 MWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           MWKLPMFGC D+A VLREI EC + +P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 127 MWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  201 bits (511), Expect = 3e-50
 Identities = 101/175 (57%), Positives = 127/175 (72%), Gaps = 7/175 (4%)
 Frame = +3

Query: 6   VASLAVA-APSC--APAESLS-KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYD 173
           VA +A+  A SC  AP+ES S K+FSGL+  TL + K+    S+ NGSRV  M VW P  
Sbjct: 40  VAPVALGGASSCVGAPSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIG 99

Query: 174 NKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRY 344
             KFET SYLPPLT +QIAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRY
Sbjct: 100 QPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRY 159

Query: 345 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           W MWKLPMFGC D++ VLREI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 160 WTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  200 bits (509), Expect = 6e-50
 Identities = 95/170 (55%), Positives = 123/170 (72%), Gaps = 4/170 (2%)
 Frame = +3

Query: 12  SLAVAAPSCAPAESLS-KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFE 188
           SLA A+P+    +S S K+FSGL+  TL + ++    S+ NGSRV  M VW P    KFE
Sbjct: 14  SLAAASPAAVSRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFE 73

Query: 189 TLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWK 359
           T SYLPPLT ++IAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWK
Sbjct: 74  TFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWK 133

Query: 360 LPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           LPMFGC D++ VLREI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 134 LPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  200 bits (509), Expect = 6e-50
 Identities = 99/182 (54%), Positives = 125/182 (68%), Gaps = 13/182 (7%)
 Frame = +3

Query: 3   SVASLAVAAPSCAPAESLS----------KSFSGLRPTTLAAPKSANPLSISNGSRVSAM 152
           SV + AVAAP    A + S          K+FSGL+P TL + K+    ++ NGSRV  M
Sbjct: 3   SVVASAVAAPVSLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCM 62

Query: 153 LVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---S 323
            VW P    KFET SYLPPLT +QIAKQVD+M+++   PCIEFD +GSV R +F G   S
Sbjct: 63  QVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSS 122

Query: 324 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQK 503
           GYYDGRYW MWKLPMFGC D++ VLREI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +
Sbjct: 123 GYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSR 182

Query: 504 PS 509
           P+
Sbjct: 183 PN 184


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  196 bits (498), Expect = 1e-48
 Identities = 95/171 (55%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
 Frame = +3

Query: 12  SLAVAAPSCAPAESLS--KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKF 185
           S+ VA+ S A +   S  K+FSGL+  TL   KS    S+ NGSRV  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 186 ETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMW 356
           ET SYLPPL+ +QIA+QVD+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 357 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           KLPMFGC D++ VLREI EC   YP  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  192 bits (487), Expect = 2e-47
 Identities = 95/178 (53%), Positives = 121/178 (67%), Gaps = 9/178 (5%)
 Frame = +3

Query: 3   SVASLAVAAPSC----APAESLS-----KSFSGLRPTTLAAPKSANPLSISNGSRVSAML 155
           +VA+ AV AP+     +PA S S     K+FSGL+  T+ + K+ N  S+ NGSRV  M 
Sbjct: 4   TVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQ 63

Query: 156 VWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYD 335
           VW P    KFET SYLPPL+ + IAKQV++M+++   PC+EFD    V R +    GYYD
Sbjct: 64  VWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYD 123

Query: 336 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           GRYW MWKLPMFGCQD+A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 124 GRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  191 bits (484), Expect = 4e-47
 Identities = 92/168 (54%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   ASLAVAAPSCAPAESLS-KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKF 185
           A+ A A+   + +ES S K+FSGL+  TL + +S    S+ NGSRV+ M VW P    KF
Sbjct: 14  AAFAAASSGVSTSESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKF 73

Query: 186 ETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLP 365
           ET SYLPPL+ + IAKQV++M+++   PC+EFD    V RE+    GYYDGRYW MWKLP
Sbjct: 74  ETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLP 133

Query: 366 MFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 509
           MFGCQD+A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 134 MFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 6e-47
 Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 8/176 (4%)
 Frame = +3

Query: 3   SVASLAVAAPS-CAPAE-SLSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVW 161
           S++S AVA  +   PA+ SL+  F+GL+     P T  A    + L  SNG RV  M VW
Sbjct: 3   SISSSAVATVNRSTPAQASLAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVW 61

Query: 162 KPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDG 338
            P   KK+ETLSYLPPL+ E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDG
Sbjct: 62  PPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDG 121

Query: 339 RYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 506
           RYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 122 RYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177