DK948953
Clone id TST38A01NGRL0004_L01
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_L01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CTCAATCTCAAAGTAGATGGCTGCAATGGCGACGATACCAATTCAGCTTCCGCGCTACCA
GAGGGTTCAAAATGCATTTGGGCAGACCACGGTCGGCGGGCTGAGGCCAAGCTACATGCA
ATGGGTGTCCACCAGGACTGCTTCATGTAAGAGCAAGTTGGGCGTTTGTCTGAGAGCACA
AGCCTCTTCTTCCGAGCTCGCTGGGGCCGTCGACTGGGGTGAACCCATCTCCCTTGGCAC
TGTAAAGCTGCCGGACAACATCAATCTTCAAAAGCTTGACATCCTTCTCTACCAGTGGGG
AAGCAATCTCACGCAAAATGCAAATCTACCTCTGCCAGCCCCAATCAAGGTAGATAAAAT
AAAGGGTGGAGTAAGGCTCGGCTACATCCGACTTGTGGATGGCGCTATTGAGGACCTTGC
ACACATAGACTGTTGTGTCTTTCCAGGCACCAAAGATTCTAGTGCCATGTTTCGAGCAGT
GAGAAGTGGACGTTTTAAGGACCAAGTTCCACCAGGTGAAGCCTTAATCATGCAAAGTCT
GCTTCAATCGTTAAAGATGTCCATTCAGCTCGCANAAATGTGAAGCTTATGTAACATTCA
GCTAAAACTCAGAGCTCATTTAAACTGTATATTTTAGCACTGATCAGCGGTGTAAATGCT
ATTAGTGTTAGGCTAA
■■Homology search results ■■ -
sp_hit_id P46814
Definition sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium leprae
Align length 37
Score (bit) 32.7
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948953|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_L01, 5'
(676 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium ... 33 1.8
sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from t... 31 5.2
sp|P49997|RECF_AZOVI DNA replication and repair protein recF OS=... 31 5.2
sp|A8EXE9|SYC_RICCK Cysteinyl-tRNA synthetase OS=Rickettsia cana... 31 6.9
sp|Q21WX9|FABZ_RHOFD (3R)-hydroxymyristoyl-[acyl-carrier-protein... 30 9.0
sp|B0JIT3|FABZ_MICAN (3R)-hydroxymyristoyl-[acyl-carrier-protein... 30 9.0

>sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium
leprae GN=dapF PE=3 SV=1
Length = 296

Score = 32.7 bits (73), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2

Query: 167 CLRAQASSSELAGAVDWGEPISLGTVKLPDNINLQKL 277
C+ Q S ELA A+D G P+ L V+ PD +N++ L
Sbjct: 172 CMDPQLSLEELA-ALDLGAPVHLDRVQFPDGVNIEVL 207


>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from
transposon BS OS=Drosophila melanogaster GN=RTase PE=2
SV=1
Length = 906

Score = 31.2 bits (69), Expect = 5.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3

Query: 111 ATCNGCPPGLLHVRASWAFV*EHKPLLPSSLGPSTGVNPSP 233
A +G P L + SW +H PL+ S ST VNPSP
Sbjct: 192 AVYHGIPDHLATITQSWDLDSDHLPLIISIETDSTHVNPSP 232


>sp|P49997|RECF_AZOVI DNA replication and repair protein recF
OS=Azotobacter vinelandii GN=recF PE=3 SV=1
Length = 364

Score = 31.2 bits (69), Expect = 5.2
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3

Query: 212 RRPQRA-RKKRLVLSDKRPTCSYMKQSWWT 126
RRPQRA R++RL + R C + +SWW+
Sbjct: 234 RRPQRADRRRRLARTMPRTCCRAVTRSWWS 263


>sp|A8EXE9|SYC_RICCK Cysteinyl-tRNA synthetase OS=Rickettsia
canadensis (strain McKiel) GN=cysS PE=3 SV=1
Length = 459

Score = 30.8 bits (68), Expect = 6.9
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Frame = +2

Query: 80 GQTTVGG--LRPSYMQWVSTRTASCKSKLGVCLRAQASSSELAGAVDWGEPISLGTVKLP 253
G TV G + S +++ R K G +R SS +D+ + K
Sbjct: 266 GFLTVNGEKMSKSLGNFITVRDLMDKEISGEVIRLFLLSSHYRRPLDYNDKAIEDAKKTL 325

Query: 254 D-------NINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKG 367
D NINLQK+DI+ + +L + N PL I D +G
Sbjct: 326 DYWYRAIVNINLQKIDIIPNDFMQSLLDDMNTPLAVKIINDYARG 370


>sp|Q21WX9|FABZ_RHOFD (3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=fabZ PE=3 SV=1
Length = 150

Score = 30.4 bits (67), Expect = 9.0
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2

Query: 452 KDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQLAXM*SLCNIQLKLRAHLNC 628
+DS F + RFK V PG+ LI++ L +K I +L + +L + A L C
Sbjct: 86 EDSVYYFAGMDGVRFKRPVEPGDQLILEVELVRMKAGIFKFKARALVDNELAVEAELTC 144


>sp|B0JIT3|FABZ_MICAN (3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase OS=Microcystis aeruginosa (strain NIES-843)
GN=fabZ PE=3 SV=1
Length = 159

Score = 30.4 bits (67), Expect = 9.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2

Query: 407 IEDLAHIDCCVF---PGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQLAX 577
+E +A + + PG K F + RF+ V PG+ LIM L S KM+ ++A
Sbjct: 78 VESMAQVGGVILTQLPGMKGKFFAFAGIDKTRFRRPVVPGDQLIMTVELLSFKMN-KIAK 136

Query: 578 M*SLCNIQLKLRAHLNCIF 634
M + +L A +F
Sbjct: 137 MQGEARVDGQLAAQGEMMF 155


tr_hit_id A9NKZ7
Definition tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 121
Score (bit) 167.0
E-value 6.0e-40
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948953|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_L01, 5'
(676 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea... 167 6e-40
tr|A9RYQ8|A9RYQ8_PHYPA Predicted protein (Fragment) OS=Physcomit... 163 8e-39
tr|B7ZYU1|B7ZYU1_MAIZE Putative uncharacterized protein OS=Zea m... 145 2e-33
tr|B6U3G5|B6U3G5_MAIZE Putative uncharacterized protein OS=Zea m... 145 2e-33
tr|Q94CW5|Q94CW5_ORYSJ cDNA clone:001-025-F01, full insert seque... 142 2e-32
tr|A2WX82|A2WX82_ORYSI Putative uncharacterized protein OS=Oryza... 142 2e-32
tr|A7PPA4|A7PPA4_VITVI Chromosome chr8 scaffold_23, whole genome... 137 8e-31
tr|A5BJZ6|A5BJZ6_VITVI Putative uncharacterized protein OS=Vitis... 137 8e-31
tr|A9NQI6|A9NQI6_PICSI Putative uncharacterized protein OS=Picea... 127 5e-28
tr|Q67XT7|Q67XT7_ARATH Putative uncharacterized protein At2g3614... 122 3e-26
tr|Q8VXY0|Q8VXY0_ARATH Putative uncharacterized protein At2g3614... 121 5e-26
tr|B6T6G8|B6T6G8_MAIZE Putative uncharacterized protein OS=Zea m... 108 2e-22
tr|A8IRT5|A8IRT5_CHLRE Predicted protein (Fragment) OS=Chlamydom... 46 0.002
tr|B8LPU9|B8LPU9_PICSI Putative uncharacterized protein OS=Picea... 43 0.016
tr|B8LKN5|B8LKN5_PICSI Putative uncharacterized protein OS=Picea... 43 0.016
tr|A4S6G1|A4S6G1_OSTLU Predicted protein OS=Ostreococcus lucimar... 43 0.021
tr|A4S8B0|A4S8B0_OSTLU Predicted protein OS=Ostreococcus lucimar... 40 0.14
tr|Q00UA5|Q00UA5_OSTTA Molecular chaperone (DnaJ superfamily) (I... 38 0.67
tr|A3K5W9|A3K5W9_9RHOB Putative oxidoreductase OS=Sagittula stel... 35 3.3
tr|A4CF91|A4CF91_9GAMM NH(3)-dependent NAD(+) synthetase OS=Pseu... 35 5.7
tr|O30894|O30894_MYXXA Putative uncharacterized protein OS=Myxoc... 34 9.6

>tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 209

Score = 167 bits (423), Expect = 6e-40
Identities = 72/121 (59%), Positives = 105/121 (86%)
Frame = +2

Query: 212 DWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIR 391
D+GEPISLGT++LP N++++K++ LL+QWG++LTQ+A LPLP P+KVDK+KGG+RLG+++
Sbjct: 87 DFGEPISLGTMQLPSNVDVKKIESLLFQWGNSLTQSATLPLPVPLKVDKVKGGIRLGFVQ 146

Query: 392 LVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQL 571
+ +G +EDL HIDC VFP + SSA+FRA+R+G+ K++ PPGE +IM+SLLQ+LK SI L
Sbjct: 147 INEGKVEDLVHIDCLVFPSVEGSSAVFRALRNGKLKNETPPGEPMIMRSLLQALKKSIDL 206

Query: 572 A 574
+
Sbjct: 207 S 207


>tr|A9RYQ8|A9RYQ8_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_48298 PE=4 SV=1
Length = 135

Score = 163 bits (413), Expect = 8e-39
Identities = 80/134 (59%), Positives = 100/134 (74%)
Frame = +2

Query: 173 RAQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKV 352
RAQA L + WGE +SLGT LP +++L +L+ LL+QWG++LT NANLPLP P+KV
Sbjct: 1 RAQAGEGSLQQSDKWGEGVSLGTALLPPDVDLARLENLLFQWGNSLTANANLPLPTPLKV 60

Query: 353 DKIKGGVRLGYIRLVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIM 532
D++KGGVRLGYIR+ +G IEDL HID V D F+A R+G+FKD+VPP E LIM
Sbjct: 61 DRVKGGVRLGYIRINEGVIEDLVHIDVIVNAAEGDQKPYFQATRNGQFKDKVPPAEPLIM 120

Query: 533 QSLLQSLKMSIQLA 574
QSLLQ+LK SIQLA
Sbjct: 121 QSLLQALKKSIQLA 134


>tr|B7ZYU1|B7ZYU1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 188

Score = 145 bits (367), Expect = 2e-33
Identities = 70/134 (52%), Positives = 96/134 (71%)
Frame = +2

Query: 173 RAQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKV 352
RA + + A D + +SLGTVKLP NI+ +L+ LL+QWG++L Q ANLPLP P+KV
Sbjct: 53 RASPAKGGIVPASDDDDGVSLGTVKLPGNIDTARLESLLFQWGNSLCQGANLPLPVPLKV 112

Query: 353 DKIKGGVRLGYIRLVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIM 532
DK++GG+RLG++ + DGA L +IDC V P S +FRA+R+G KD+ PPGE IM
Sbjct: 113 DKVEGGIRLGFVAVEDGATRTLVYIDCLVSPAPDGSGPVFRAIRNGPMKDKEPPGEPRIM 172

Query: 533 QSLLQSLKMSIQLA 574
+SLLQ+L+ SIQ+A
Sbjct: 173 RSLLQALEKSIQIA 186


>tr|B6U3G5|B6U3G5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 197

Score = 145 bits (367), Expect = 2e-33
Identities = 70/134 (52%), Positives = 96/134 (71%)
Frame = +2

Query: 173 RAQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKV 352
RA + + A D + +SLGTVKLP NI+ +L+ LL+QWG++L Q ANLPLP P+KV
Sbjct: 62 RASPAKGGIVPASDDDDGVSLGTVKLPGNIDTARLESLLFQWGNSLCQGANLPLPVPLKV 121

Query: 353 DKIKGGVRLGYIRLVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIM 532
DK++GG+RLG++ + DGA L +IDC V P S +FRA+R+G KD+ PPGE IM
Sbjct: 122 DKVEGGIRLGFVAVEDGATRTLVYIDCLVSPAPDGSGPVFRAIRNGPMKDKEPPGEPRIM 181

Query: 533 QSLLQSLKMSIQLA 574
+SLLQ+L+ SIQ+A
Sbjct: 182 RSLLQALEKSIQIA 195


>tr|Q94CW5|Q94CW5_ORYSJ cDNA clone:001-025-F01, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0423B08.8-1 PE=2
SV=1
Length = 186

Score = 142 bits (358), Expect = 2e-32
Identities = 69/134 (51%), Positives = 95/134 (70%)
Frame = +2

Query: 173 RAQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKV 352
RA A E+ A D + +SLGTVKLP NI++ + + LL+QWG++L Q A LPLP P++V
Sbjct: 51 RAAAGKDEIVRADDDDDGVSLGTVKLPANIDIARFETLLFQWGNSLCQGATLPLPVPLRV 110

Query: 353 DKIKGGVRLGYIRLVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIM 532
DK++GGVRLG++ + DG + L +IDC V P T S +FRA+R+G KDQ PPGE IM
Sbjct: 111 DKVEGGVRLGFMAVDDGVTQVLVYIDCLVSPATAASGPVFRAIRNGPMKDQEPPGEPRIM 170

Query: 533 QSLLQSLKMSIQLA 574
+SLL++L+ IQ A
Sbjct: 171 RSLLEALQKCIQYA 184


>tr|A2WX82|A2WX82_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04525 PE=4 SV=1
Length = 186

Score = 142 bits (358), Expect = 2e-32
Identities = 69/134 (51%), Positives = 95/134 (70%)
Frame = +2

Query: 173 RAQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKV 352
RA A E+ A D + +SLGTVKLP NI++ + + LL+QWG++L Q A LPLP P++V
Sbjct: 51 RAAAGKDEIVRADDDDDGVSLGTVKLPANIDIARFETLLFQWGNSLCQGATLPLPVPLRV 110

Query: 353 DKIKGGVRLGYIRLVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIM 532
DK++GGVRLG++ + DG + L +IDC V P T S +FRA+R+G KDQ PPGE IM
Sbjct: 111 DKVEGGVRLGFMAVDDGVTQVLVYIDCLVSPATAASGPVFRAIRNGPMKDQEPPGEPRIM 170

Query: 533 QSLLQSLKMSIQLA 574
+SLL++L+ IQ A
Sbjct: 171 RSLLEALQKCIQYA 184


>tr|A7PPA4|A7PPA4_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021574001
PE=4 SV=1
Length = 190

Score = 137 bits (344), Expect = 8e-31
Identities = 64/118 (54%), Positives = 87/118 (73%)
Frame = +2

Query: 221 EPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIRLVD 400
E +SLGT+KLP + ++ + + LL+QW ++L Q ANLPLP P+KVD+I+GG RLG+I + D
Sbjct: 71 EGVSLGTMKLPSDTDIPRFESLLFQWANSLCQGANLPLPVPLKVDRIQGGARLGFITIGD 130

Query: 401 GAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQLA 574
G E L +IDC VFP T S FRA+R+G KD PPGE IM+SLLQ+LK S+++A
Sbjct: 131 GKTEVLVYIDCLVFPATDGSGPTFRAIRNGPLKDLSPPGEPRIMRSLLQALKKSVEIA 188


>tr|A5BJZ6|A5BJZ6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_006537 PE=4 SV=1
Length = 138

Score = 137 bits (344), Expect = 8e-31
Identities = 64/118 (54%), Positives = 87/118 (73%)
Frame = +2

Query: 221 EPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIRLVD 400
E +SLGT+KLP + ++ + + LL+QW ++L Q ANLPLP P+KVD+I+GG RLG+I + D
Sbjct: 19 EGVSLGTMKLPSDTDIPRFESLLFQWANSLCQGANLPLPVPLKVDRIQGGARLGFITIGD 78

Query: 401 GAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQLA 574
G E L +IDC VFP T S FRA+R+G KD PPGE IM+SLLQ+LK S+++A
Sbjct: 79 GKTEVLVYIDCLVFPATDGSGPTFRAIRNGPLKDLSPPGEPRIMRSLLQALKKSVEIA 136


>tr|A9NQI6|A9NQI6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 191

Score = 127 bits (320), Expect = 5e-28
Identities = 60/121 (49%), Positives = 89/121 (73%)
Frame = +2

Query: 212 DWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIR 391
D+GEPISLGT++LP N++++K++ LL+Q VDK+KGG+RLG+++
Sbjct: 87 DFGEPISLGTMQLPSNVDVKKIESLLFQ------------------VDKVKGGIRLGFVQ 128

Query: 392 LVDGAIEDLAHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSLLQSLKMSIQL 571
+ +G +EDL HIDC VFP + SSA+FRA+R+G+ K++ PPGE +IM+SLLQ+LK SI L
Sbjct: 129 INEGKVEDLVHIDCLVFPSVEGSSAVFRALRNGKLKNETPPGEPMIMRSLLQALKKSIDL 188

Query: 572 A 574
+
Sbjct: 189 S 189


>tr|Q67XT7|Q67XT7_ARATH Putative uncharacterized protein At2g36145
(Fragment) OS=Arabidopsis thaliana GN=At2g36145 PE=2
SV=1
Length = 189

Score = 122 bits (305), Expect = 3e-26
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Frame = +2

Query: 8 SK*MAAMATIPIQLPRYQRVQNAF-GQTTVGGLRPSYMQWVSTRTASCKSKLGVCLRAQA 184
S+ MA AT+ + P R F G+ ++ P +Q + T A+ ++ + A A
Sbjct: 1 SRKMAFAATLFVPPPVAVRSPARFLGRLSI----PCLLQVLPTNGAASPRQVKRAIVANA 56

Query: 185 SSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIK 364
S + + +SLGT+KLP + +L + + LL+QW ++L Q ANLPLP P+KVD+I
Sbjct: 57 SPGNGGVKAEEEDGVSLGTMKLPVDTDLARFETLLFQWANSLCQGANLPLPVPLKVDRIS 116

Query: 365 GGVRLGYIRLVDGAIEDL-AHIDCCVFPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQSL 541
GG RLG+I + D D+ +IDC VF T ++ +F+A R+GR KD+ PPGE IM+SL
Sbjct: 117 GGARLGFIVMEDEGKTDVPVYIDCLVFQ-TTENGVVFQATRNGRKKDKAPPGEERIMRSL 175

Query: 542 LQSLKMSIQLA 574
L +LK ++++A
Sbjct: 176 LGALKKAVEIA 186