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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948965
Clone id TST38A01NGRL0004_L14
Library
Length 631
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_L14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATTGAGAGAGAGAGAGACAGAGAGACCTCTCTCGCGCAGAAAGAGCAGCAAAGAGCACCA
ACCTGAAGTGGGTACTTGTGTAATTTTGCTATGTACACAGACAGTTCCTGTGAAGGCTTT
AAGCACGTGACTAGGAGCACGCTTCCTTGAGTACTACGCACATACACACACAGTGACACA
CCTTTAATTAGCGAGCCGGAGACACAGAGGTCACCCCCCCCCCCCCACACACATACACTA
ACGCACACACACACATTGCCTCACGCAGGGGTGTGCTCGGCAATGTCTTCAAGCCTCTCT
TATGGGACACACAGAGGCATTGAATGGATGCCCATATCACGACAGGGTATAACCAAATGC
AGGGAAGGTCATCGATACCAGATTGTGGCAATGACTTCAGGGGCAAAACCCACCTGGCAA
AACAACATCAGATCTGTTGCCAGCGATGCAACTGGGGTGAACCACAAAGCTAACAACAGC
AAAGTGATATTGGGCTCGCCTGCGGATATTAGGCTCCTTTCCCCACATCTTCACGTGACT
GACGTGCGGAGGGAAAGGGAAATGCTTGTTGATGTGCTTGACCATGGCAGGCTTGTCGAC
AATGACCTTGTCTACCGACAAACTTTTGTTA
■■Homology search results ■■ -
sp_hit_id P03071
Definition sp|P03071|LT_POVBK Large T antigen OS=BK polyomavirus
Align length 31
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948965|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_L14, 5'
         (631 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03071|LT_POVBK Large T antigen OS=BK polyomavirus PE=3 SV=1        33   1.2  
sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ...    32   3.5  
sp|Q3L6L5|LT_POVS1 Large T antigen OS=Simian virus 12 (strain wt...    32   3.5  
sp|Q8LFW6|SPL13_ARATH Squamosa promoter-binding-like protein 13 ...    32   3.5  
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv...    31   4.6  
sp|A4FFX3|MDH_SACEN Malate dehydrogenase OS=Saccharopolyspora er...    30   7.9  
sp|Q2J7E7|MDH_FRASC Malate dehydrogenase OS=Frankia sp. (strain ...    30   7.9  
sp|Q0RE66|MDH_FRAAA Malate dehydrogenase OS=Frankia alni (strain...    30   7.9  

>sp|P03071|LT_POVBK Large T antigen OS=BK polyomavirus PE=3 SV=1
          Length = 695

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 521 ERSLISAGEPNITLLLLALWFTPVASLATDL 429
           E+ ++ +G   +TLLLL +WF PVA  ATD+
Sbjct: 567 EKRILQSG---MTLLLLLIWFRPVADFATDI 594


>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204
           OS=Homo sapiens PE=2 SV=2
          Length = 223

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 147 LSTTHIHTQ*HTFN*RAGDTEVTPPPPHTYTNAHTHIASR 266
           L+ +H+HT  HT     G T       H +T+AH+H  +R
Sbjct: 110 LTLSHMHTHAHTHAHTHGHTHTRAHSTHAHTHAHSHYHTR 149


>sp|Q3L6L5|LT_POVS1 Large T antigen OS=Simian virus 12 (strain
           wt100) PE=3 SV=1
          Length = 699

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 521 ERSLISAGEPNITLLLLALWFTPVASLATDL 429
           E+ ++ +G   +TLLLL +WF PVA  A+D+
Sbjct: 567 EKRILQSG---MTLLLLLIWFRPVADFASDI 594


>sp|Q8LFW6|SPL13_ARATH Squamosa promoter-binding-like protein 13
           OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2
          Length = 359

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 394 TSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPADIRLLSP 525
           TS   P+W N++ SVA  A G ++  + S V+  SPA   ++ P
Sbjct: 208 TSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFP 251


>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
           herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
          Length = 413

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 256 MCVCALVYVCGGGGVTSVSPAR*LKVCHCVCMCVVL 149
           +CVCA V VC    V +   AR + VC CVC+C  L
Sbjct: 93  VCVCARVCVCARVCVCARVCAR-VCVCACVCVCACL 127



 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/75 (29%), Positives = 28/75 (37%)
 Frame = -1

Query: 361 CIWLYPVVIWASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVCGGGGVTSVSPAR*LK 182
           C+ +   V      CLCV             L   +CVC  V VC       V     L 
Sbjct: 248 CVCVCVCVCLCVCVCLCVC------------LCVCLCVCVCVCVC-----LCVCLCVCLC 290

Query: 181 VCHCVCMCVVLKEAC 137
           VC CVC+C++    C
Sbjct: 291 VCVCVCVCLLCMSLC 305


>sp|A4FFX3|MDH_SACEN Malate dehydrogenase OS=Saccharopolyspora
           erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1
          Length = 328

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
 Frame = +1

Query: 385 VAMTSGAKPTWQNNIRSVASDATGVNHKANNSKV-----------ILGSPADIRLLSPHL 531
           VA+  GA+P  +   R    +A G   K     +           ++G+PA+   L    
Sbjct: 84  VALLVGARPRTKGMERGDLLEANGGIFKPQGEAINAGAADDVRVLVVGNPANTNALIAQA 143

Query: 532 HVTDVRREREMLVDVLDHGR 591
           H  DV  ER   +  LDH R
Sbjct: 144 HAPDVPAERFTAMTRLDHNR 163


>sp|Q2J7E7|MDH_FRASC Malate dehydrogenase OS=Frankia sp. (strain
           CcI3) GN=mdh PE=3 SV=1
          Length = 329

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
 Frame = +1

Query: 385 VAMTSGAKPTWQNNIRSVASDATGVNHKANNSKV-----------ILGSPADIRLLSPHL 531
           VA+  GA+P  +   R     A G   K     +           ++G+PA+   L    
Sbjct: 84  VALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQT 143

Query: 532 HVTDVRREREMLVDVLDHGRLV 597
           H  DV  ER   +  LDH R +
Sbjct: 144 HAPDVPAERFTAMTRLDHNRAI 165


>sp|Q0RE66|MDH_FRAAA Malate dehydrogenase OS=Frankia alni (strain
           ACN14a) GN=mdh PE=3 SV=1
          Length = 329

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
 Frame = +1

Query: 385 VAMTSGAKPTWQNNIRSVASDATGVNHKANNSKV-----------ILGSPADIRLLSPHL 531
           VA+  GA+P  +   R     A G   K     +           ++G+PA+   L    
Sbjct: 84  VALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQT 143

Query: 532 HVTDVRREREMLVDVLDHGRLV 597
           H  DV  ER   +  LDH R +
Sbjct: 144 HAPDVPAERFTAMTRLDHNRAI 165
tr_hit_id Q8NH31
Definition tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Homo sapiens
Align length 69
Score (bit) 35.0
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948965|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_L14, 5'
         (631 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Hom...    35   0.004
tr|A4Y9M4|A4Y9M4_SHEPC Peptidyl-prolyl cis-trans isomerase OS=Sh...    39   0.26 
tr|A1RGQ5|A1RGQ5_SHESW Peptidyl-prolyl cis-trans isomerase OS=Sh...    39   0.26 
tr|A2UYC2|A2UYC2_SHEPU Peptidyl-prolyl cis-trans isomerase OS=Sh...    39   0.26 
tr|Q4RDS8|Q4RDS8_TETNG Chromosome undetermined SCAF15796, whole ...    38   0.58 
tr|Q0HLM4|Q0HLM4_SHESM Peptidyl-prolyl cis-trans isomerase OS=Sh...    38   0.58 
tr|A1ZPP7|A1ZPP7_9SPHI Xaa-Pro dipeptidase family enzyme OS=Micr...    37   0.76 
tr|Q4TI27|Q4TI27_TETNG Chromosome undetermined SCAF2445, whole g...    37   0.99 
tr|Q8EHS8|Q8EHS8_SHEON Peptidyl-prolyl cis-trans isomerase OS=Sh...    37   1.3  
tr|A9V0T3|A9V0T3_MONBE Predicted protein OS=Monosiga brevicollis...    32   1.3  
tr|A9UX31|A9UX31_MONBE Predicted protein OS=Monosiga brevicollis...    36   1.7  
tr|Q6ZQS2|Q6ZQS2_HUMAN cDNA FLJ45585 fis, clone BRTHA3013882 OS=...    36   2.2  
tr|A0KTT1|A0KTT1_SHESA Peptidyl-prolyl cis-trans isomerase OS=Sh...    35   2.9  
tr|A0KI69|A0KI69_AERHH Pts system, fructose-specific iiabc compo...    35   2.9  
tr|A9T7V1|A9T7V1_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.9  
tr|A9V5C0|A9V5C0_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.9  
tr|A9V4K7|A9V4K7_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.9  
tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.9  
tr|A9VBU8|A9VBU8_MONBE Predicted protein OS=Monosiga brevicollis...    30   3.2  
tr|A9V8M3|A9V8M3_MONBE Predicted protein OS=Monosiga brevicollis...    32   3.6  
tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole ...    35   3.7  
tr|A9U2A8|A9U2A8_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   4.9  
tr|A9V319|A9V319_MONBE Predicted protein OS=Monosiga brevicollis...    35   4.9  
tr|Q9M2C6|Q9M2C6_ARATH Putative uncharacterized protein T20K12.2...    34   6.4  
tr|Q0WNA4|Q0WNA4_ARATH Putative uncharacterized protein At3g6138...    34   6.4  
tr|Q8KM86|Q8KM86_9MOLU Putative uncharacterized protein OS=Mycop...    34   8.2  
tr|A9V918|A9V918_MONBE Predicted protein OS=Monosiga brevicollis...    34   8.2  
tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome sho...    34   8.3  
tr|Q0HY05|Q0HY05_SHESR Peptidyl-prolyl cis-trans isomerase OS=Sh...    34   8.3  
tr|A6VM94|A6VM94_ACTSZ Peptidyl-prolyl cis-trans isomerase OS=Ac...    34   8.3  

>tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Homo
           sapiens PE=4 SV=1
          Length = 346

 Score = 35.0 bits (79), Expect(2) = 0.004
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -1

Query: 361 CIWLYPVVIWASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVCGGGGVTSVSPAR*LK 182
           C++L+  V      C+CV          S  L  ++C C  + VC       VS    L+
Sbjct: 108 CVYLHISVYLCVYVCICVC--------VSVSLCVSVCACLSLCVC-----IRVSVCLSLR 154

Query: 181 VCHCVCMCV 155
           VC CVC+CV
Sbjct: 155 VCVCVCLCV 163



 Score = 29.6 bits (65), Expect(2) = 0.004
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 180 CVTVCVCA*YSRKRAPSHVLKAFTGTVCVHSKITQVPTSGWCSLLLF 40
           C  VCV    S   A   V  AF+  +C  S I  +P+S WC LLL+
Sbjct: 184 CECVCVSVSLSDPPALVPVSGAFSPQLCASSLILLLPSS-WCFLLLW 229


>tr|A4Y9M4|A4Y9M4_SHEPC Peptidyl-prolyl cis-trans isomerase
           OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
           GN=Sputcn32_2942 PE=3 SV=1
          Length = 205

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +1

Query: 340 RQGITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPAD 507
           R+G+T    G +Y+++   SGAKPT+++ +R+     + +N    +S V+ G PA+
Sbjct: 93  REGVTVTDSGLQYEVLVQGSGAKPTYEDTVRT-HYHGSFINGDVFDSSVVRGQPAE 147


>tr|A1RGQ5|A1RGQ5_SHESW Peptidyl-prolyl cis-trans isomerase
           OS=Shewanella sp. (strain W3-18-1) GN=Sputw3181_1000
           PE=3 SV=1
          Length = 205

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +1

Query: 340 RQGITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPAD 507
           R+G+T    G +Y+++   SGAKPT+++ +R+     + +N    +S V+ G PA+
Sbjct: 93  REGVTVTDSGLQYEVLVQGSGAKPTYEDTVRT-HYHGSFINGDVFDSSVVRGQPAE 147


>tr|A2UYC2|A2UYC2_SHEPU Peptidyl-prolyl cis-trans isomerase
           OS=Shewanella putrefaciens 200 GN=Sput200DRAFT_2047 PE=3
           SV=1
          Length = 205

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +1

Query: 340 RQGITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPAD 507
           R+G+T    G +Y+++   SGAKPT+++ +R+     + +N    +S V+ G PA+
Sbjct: 93  REGVTVTDSGLQYEVLVQGSGAKPTYEDTVRT-HYHGSFINGDVFDSSVVRGQPAE 147


>tr|Q4RDS8|Q4RDS8_TETNG Chromosome undetermined SCAF15796, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00037748001 PE=4 SV=1
          Length = 277

 Score = 37.7 bits (86), Expect = 0.58
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -1

Query: 256 MCVCALVYVCGGGGVTSVSPAR*LKVCHCVCMC 158
           +CVC  V VC GGG+   S    L+VC CVC+C
Sbjct: 203 VCVCVCVCVCVGGGLACSSAD--LRVCVCVCVC 233


>tr|Q0HLM4|Q0HLM4_SHESM Peptidyl-prolyl cis-trans isomerase
           OS=Shewanella sp. (strain MR-4) GN=Shewmr4_0963 PE=3
           SV=1
          Length = 205

 Score = 37.7 bits (86), Expect = 0.58
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = +1

Query: 340 RQGITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPAD 507
           R G+T    G +Y+++   SGAKPT+++ +R+     + +N    +S V+ G PA+
Sbjct: 93  RAGVTVTDSGLQYEVLVQGSGAKPTYEDTVRT-HYHGSFINGDVFDSSVVRGQPAE 147


>tr|A1ZPP7|A1ZPP7_9SPHI Xaa-Pro dipeptidase family enzyme
           OS=Microscilla marina ATCC 23134 GN=M23134_02799 PE=4
           SV=1
          Length = 428

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 346 GITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPADIRLL-S 522
           G+  CR+  RYQ        K T    + SVA D +         K I+ +  D+ L+ +
Sbjct: 191 GVDDCRKAVRYQYKVGADVIKITATGGVLSVAKDGSRPQFTEEEIKAIVATANDLDLVTA 250

Query: 523 PHLHVTD-VRREREMLVDVLDHGRLVDND 606
            H H  + ++R     ++ ++HG L+D++
Sbjct: 251 AHAHGAEGIKRAVRAGINSIEHGTLIDDE 279


>tr|Q4TI27|Q4TI27_TETNG Chromosome undetermined SCAF2445, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00000162001 PE=4 SV=1
          Length = 337

 Score = 37.0 bits (84), Expect = 0.99
 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 3/142 (2%)
 Frame = -1

Query: 553 PSARQSREDVGKGA*YPQASPISLCCC*LCGSPQLHRWQQI*CCFARWVLPLKSLPQSGI 374
           P  R     V  G    Q  P S+C C    SP   R   +  C A           + +
Sbjct: 200 PPGRAEGRQVVLGCDEHQQRPASICLC--VRSP---RPSDVCVCGA-----------AAL 243

Query: 373 DDLPCIWLYPVVIWASIQCLCVSHKRGLKTLPST-PLREAM--CVCALVYVCGGGGVTSV 203
            DL   W   V +W     LC         +PST P+R  +   + A V VC    +TS 
Sbjct: 244 SDL---WWRCVCVWGGRAPLCPE-----PNIPSTVPVRTLLSGALAAPVLVCVLRRMTSP 295

Query: 202 SPAR*LKVCHCVCMCVVLKEAC 137
                L VC CVC+CV LKE C
Sbjct: 296 -----LCVCVCVCVCVQLKEMC 312


>tr|Q8EHS8|Q8EHS8_SHEON Peptidyl-prolyl cis-trans isomerase
           OS=Shewanella oneidensis GN=fklB PE=3 SV=1
          Length = 205

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 16/57 (28%), Positives = 34/57 (59%)
 Frame = +1

Query: 337 SRQGITKCREGHRYQIVAMTSGAKPTWQNNIRSVASDATGVNHKANNSKVILGSPAD 507
           +R+G+     G +Y+++   +GAKPT+++ +R+     + +N    +S V+ G PA+
Sbjct: 92  NREGVIVTESGLQYEVLVQGNGAKPTYEDTVRT-HYHGSFINGDVFDSSVVRGQPAE 147


>tr|A9V0T3|A9V0T3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=25902 PE=4 SV=1
          Length = 340

 Score = 32.3 bits (72), Expect(2) = 1.3
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 313 CVSHK-RGLKTLPST-PLREAMCVCALVYVCGGGGVTSVSPAR*LKVCHCVCMCV 155
           C  HK R L+  PS   +R  +CVC  V VC       V     + VC CVC+CV
Sbjct: 7   CSFHKVRRLRVCPSRWCVRVCVCVCVCVCVCA---CVCVCVCVCVCVCVCVCVCV 58



 Score = 23.5 bits (49), Expect(2) = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 180 CVTVCVCA*YSRKRAPSHV 124
           CV VCVC    ++R   HV
Sbjct: 51  CVCVCVCVCDGKRRLARHV 69