DK948967 [AcEST]

DK948967
Clone id	TST38A01NGRL0004_L16
Library	TST38
Length	629
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_L16. 5' end sequence.
Accession	DK948967
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	CL1054Contig1
Sequence	CGATTATAAGATAGAGCTGATGTTGCAAACCAGGCAGATAAGAGACCTCATTGTGCTTCT CATCAAGGGCTTCAATTTGCAAGCTCATTAGTAGTACCTATTGGGTCAGATCTGGAGGTT TTACATCACTAAAGCTCAAAGGCACCCGCTGGATCAGGGATGAATGTTTGGCCTTATACG CTCTCATTAGGAGAGGAAGCCTACTAGTATACTTCTATGTAACATGTGAGATGTAAAACT GAGAGTACTCATAGTAGAACTGATTTCCTCTTCCTATGGTCTTAAACAACCAACCTTGAA AGGATCTTGCAAAAATTTTGCAAGACACTGCCGAAATACAAGCCAAAGCTTCCAACTGCT CTAATTTTTGTGTGCCTTTGCTGGTAAAGCTTCACCTACCCACATATGTAATATATTCTG GATGCGCTCTCATTGTTGAGCTTTCGCTACTTACTTATGGATGGTACTTAGGTTTTCAGC TCAGCAGGGTCCTGCCCTGCCAAACCCTGTCTTTTTGTCATATTGGTCGCTCATAACACT GATTTTATGTGATGAAGCGTTGCCATGTATTTCTTTCAACATCTCAAGGTCTCTCTGTAG TTGTAAACTAGCAACGTTTAAGCAAAGAC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q6GM71
Definition	sp\|Q6GM71\|LRWD1_XENLA Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus laevis
Align length	62
Score (bit)	30.8
E-value	6.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK948967\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_L16, 5' (629 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q6GM71\|LRWD1_XENLA Leucine-rich repeat and WD repeat-containi... 31 6.0 >sp\|Q6GM71\|LRWD1_XENLA Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus laevis GN=lrwd1 PE=2 SV=1 Length = 722 Score = 30.8 bits (68), Expect = 6.0 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -2 Query: 214 KYTSRLPLLMRAYKAKHSSLIQRVPLSFSDVKPPDLTQ*VLLMSLQIEALDEKHNEVSYL 35 K T+ L L K H ++++ LS + DL Q + + ++ LD HN +S L Sbjct: 3 KLTTELLLKKGLPKCSHLKDLKKLNLSKMQLDLKDLDQKLFSQMVNLDELDISHNTLSDL 62 Query: 34 PG 29 PG Sbjct: 63 PG 64
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A9TP35
Definition	tr\|A9TP35\|A9TP35_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length	23
Score (bit)	35.0
E-value	3.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK948967\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_L16, 5' (629 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A9TP35\|A9TP35_PHYPA Predicted protein OS=Physcomitrella paten... 35 3.7 >tr\|A9TP35\|A9TP35_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_148415 PE=4 SV=1 Length = 1635 Score = 35.0 bits (79), Expect = 3.7 Identities = 14/23 (60%), Positives = 22/23 (95%) Frame = +2 Query: 8 KIELMLQTRQIRDLIVLLIKGFN 76 ++ELM+Q+R IRD+IVL+I+GF+ Sbjct: 1599 EVELMVQSRHIRDIIVLVIRGFS 1621