DK948984 |
Clone id |
TST38A01NGRL0004_M10 |
Library |
TST38 |
Length |
631 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_M10. 5' end sequence. |
Accession |
DK948984 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL808Contig1 |
Sequence |
GCTACCTTCTCGCCAGGTCAGCCAGCAGCAGAACCGCTCAGTACTGCTATGGCAGCTTCT CCATCGATCCCTCTCAACAGGAATGTTGAGTCTAATCAGGGGCTGTCCCGACAAGCTTTT GGAATGATTCACGATGGCCCTGGACAATTGGTACGGACTTCAGAGTACTATGAGCCCCAG GAGGGAGATATTGTTCTGGGTGTGGTCACTTACGCAGATGAAGATGAATTGAGCTTAGAA ATTGGAGGCAGGGTTCCTGCAATTATGACTATGAGAGACTTCCAACCATTTACAGAGATT GGAGCCGATTCTTTCTTCAAAATTCCAGATGATGACAGCAGTGAGAATGTTGAAGGTTCT GAGGCACTGCCTCAGGGGAAAGTTTTACTGGTTGAAGACAAAGCAGCCAATGATGGCGTT TATCGTGGTGAGAATGTCAACATGGGTACCATTGTTGTTGCTGAAGTCCAAAGCAGAGCA CTGGTGGAAGGCAGACCCGTTCTGACTTGTAGAAGATTGGCACGGAGTCTTGCATTTGTA CGAATTGAACAGATAATGAGAACTGGGGAGCCCATTCAGATGGAGATCAATCAAAGCAAT GATGGAGGTCTCCAGGGTTATGTGGAGGGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O33698 |
Definition |
sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) |
Align length |
161 |
Score (bit) |
38.9 |
E-value |
0.022 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9M9H4 |
Definition |
tr|Q9M9H4|Q9M9H4_ARATH F14O23.10 protein OS=Arabidopsis thaliana |
Align length |
163 |
Score (bit) |
83.6 |
E-value |
9.0e-15 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948984|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_M10, 5' (631 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9M9H4|Q9M9H4_ARATH F14O23.10 protein OS=Arabidopsis thaliana... 84 9e-15 tr|Q56XP0|Q56XP0_ARATH RIBOSOMAL PROTEIN OS=Arabidopsis thaliana... 84 9e-15 tr|A7QRK4|A7QRK4_VITVI Chromosome undetermined scaffold_151, who... 83 2e-14 tr|Q5ZC75|Q5ZC75_ORYSJ cDNA clone:J013110C21, full insert sequen... 74 1e-11 tr|B8AB36|B8AB36_ORYSI Putative uncharacterized protein OS=Oryza... 74 1e-11 tr|Q0DGF0|Q0DGF0_ORYSJ Os05g0535800 protein OS=Oryza sativa subs... 73 1e-11 tr|A2Y6W7|A2Y6W7_ORYSI Putative uncharacterized protein OS=Oryza... 67 7e-10 tr|A3B688|A3B688_ORYSJ Putative uncharacterized protein OS=Oryza... 65 3e-09 tr|A9RDY1|A9RDY1_PHYPA Predicted protein OS=Physcomitrella paten... 57 1e-06 tr|B8AB73|B8AB73_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05 tr|A9TKV9|A9TKV9_PHYPA Predicted protein OS=Physcomitrella paten... 52 3e-05 tr|A9RXC5|A9RXC5_PHYPA Predicted protein OS=Physcomitrella paten... 52 4e-05 tr|B7DUB2|B7DUB2_9BACL RNA binding S1 domain protein OS=Alicyclo... 46 0.002 tr|Q6L5I7|Q6L5I7_ORYSJ Putative 30S ribosomal protein S1 OS=Oryz... 45 0.003 tr|B7JUD6|B7JUD6_SYNP8 RNA binding S1 domain protein OS=Synechoc... 44 0.011 tr|B4BX76|B4BX76_9CHRO RNA binding S1 domain protein OS=Cyanothe... 44 0.011 tr|B1XJQ5|B1XJQ5_SYNP2 30S ribosomal protein S1 like protein OS=... 43 0.018 tr|B0JPE8|B0JPE8_MICAN Nucleic acid-binding protein OS=Microcyst... 42 0.023 tr|A7NKT3|A7NKT3_ROSCS RNA binding S1 domain protein OS=Roseifle... 42 0.031 tr|A8YAJ6|A8YAJ6_MICAE Similar to tr|Q4C3R0|Q4C3R0_CROWT RNA bin... 42 0.031 tr|Q2RIU7|Q2RIU7_MOOTA Hydroxymethylbutenyl pyrophosphate reduct... 40 0.12 tr|Q4C3R0|Q4C3R0_CROWT RNA binding S1 OS=Crocosphaera watsonii G... 40 0.12 tr|B7K791|B7K791_9CHRO RNA binding S1 domain protein OS=Cyanothe... 39 0.20 tr|B1I3Y7|B1I3Y7_DESAP Hydroxymethylbutenyl pyrophosphate reduct... 39 0.34 tr|A9KLR6|A9KLR6_CLOPH Hydroxymethylbutenyl pyrophosphate reduct... 38 0.44 tr|Q13XE9|Q13XE9_BURXL Periplasmic phospholipid binding protein ... 38 0.58 tr|A4QDW3|A4QDW3_CORGB Putative uncharacterized protein OS=Coryn... 38 0.58 tr|B0NZT5|B0NZT5_9CLOT Putative uncharacterized protein OS=Clost... 37 0.76 tr|B8DUV1|B8DUV1_BIFAN 30S ribosomal protein S1 OS=Bifidobacteri... 37 0.99 tr|B2E8J4|B2E8J4_BIFAN 30S ribosomal protein S1 OS=Bifidobacteri... 37 0.99
>tr|Q9M9H4|Q9M9H4_ARATH F14O23.10 protein OS=Arabidopsis thaliana GN=F14O23.10 PE=4 SV=1 Length = 500
Score = 83.6 bits (205), Expect = 9e-15 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Frame = +1
Query: 163 EYYEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFKIPDDDSS 342 EYY+P+ GD V+GVV +E++L + IG + M ++ P + D Sbjct: 151 EYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLL------CD 204
Query: 343 ENVEGSEALPQGKVLLVEDKAANDGVYRGEN-------VNMGTIVVAEVQSRALVEGRPV 501 + E L GK+ +V+D ++GV E V +GT+V AEV R L GRP+ Sbjct: 205 LKYDAEEFLVNGKMGIVKDD--DEGVEIAEFARQGRPVVEIGTVVFAEVLGRTL-SGRPL 261
Query: 502 LTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 L+ RR R +A+ R+ QI + EPI+++I + N GGL +EG Sbjct: 262 LSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEG 304
>tr|Q56XP0|Q56XP0_ARATH RIBOSOMAL PROTEIN OS=Arabidopsis thaliana GN=At1g71720 PE=2 SV=1 Length = 336
Score = 83.6 bits (205), Expect = 9e-15 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Frame = +1
Query: 163 EYYEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFKIPDDDSS 342 EYY+P+ GD V+GVV +E++L + IG + M ++ P + D Sbjct: 151 EYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLL------CD 204
Query: 343 ENVEGSEALPQGKVLLVEDKAANDGVYRGEN-------VNMGTIVVAEVQSRALVEGRPV 501 + E L GK+ +V+D ++GV E V +GT+V AEV R L GRP+ Sbjct: 205 LKYDAEEFLVNGKMGIVKDD--DEGVEIAEFARQGRPVVEIGTVVFAEVLGRTL-SGRPL 261
Query: 502 LTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 L+ RR R +A+ R+ QI + EPI+++I + N GGL +EG Sbjct: 262 LSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEG 304
>tr|A7QRK4|A7QRK4_VITVI Chromosome undetermined scaffold_151, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00005394001 PE=4 SV=1 Length = 507
Score = 82.8 bits (203), Expect = 2e-14 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 2/189 (1%) Frame = +1
Query: 70 PLNRNVESNQGLSRQAFGMIHDGPGQLVRTSEYYEPQEGDIVLGVVTYADEDELSLEIGG 249 P + E+N + G +LV EYYEP+ GD V+GVV +E++L + +G Sbjct: 128 PRESSEEANGASGEDGSEISESGSTKLVSV-EYYEPKPGDFVVGVVVSGNENKLDVNVGA 186
Query: 250 RVPAIMTMRDFQPFTEIGADSFFKIPDDDSSENVEGSEALPQGKVLLV--EDKAANDGVY 423 + M ++ P + + + D+ E + GK+ +V +D + + Sbjct: 187 DLLGTMLTKEVLPLYDKEMEYLLCDVEKDAEE------FMVHGKMSIVRNDDALSRVPMQ 240
Query: 424 RGENVNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSND 603 V GT++ AEV R L GRP+L+ RR R +A+ R+ QI + EPI++ I + N Sbjct: 241 GSPVVETGTVLFAEVLGRTL-SGRPLLSTRRFFRRIAWHRVRQIKQLNEPIEVRITEWNT 299
Query: 604 GGLQGYVEG 630 GGL +EG Sbjct: 300 GGLLTRIEG 308
>tr|Q5ZC75|Q5ZC75_ORYSJ cDNA clone:J013110C21, full insert sequence OS=Oryza sativa subsp. japonica GN=P0415C01.8 PE=2 SV=1 Length = 438
Score = 73.6 bits (179), Expect = 1e-11 Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Frame = +1
Query: 154 RTSEYYEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFKIPDD 333 R+ Y+P+ GD +GVV E L + +G A + ++ P +F Sbjct: 77 RSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYRADLPAF------ 130
Query: 334 DSSENVEGSEALPQ--GKVLLVEDKAANDGVYR-GEN------VNMGTIVVAEVQSRALV 486 +EA P G V V AA +G + GE V GT+V AEV R L Sbjct: 131 --------AEAAPPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTL- 181
Query: 487 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 GRP+L+ RRL R LA+ R Q+M+ EPI+++I + N GGL +EG Sbjct: 182 SGRPLLSARRLFRRLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEG 229
>tr|B8AB36|B8AB36_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02640 PE=4 SV=1 Length = 361
Score = 73.6 bits (179), Expect = 1e-11 Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Frame = +1
Query: 154 RTSEYYEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFKIPDD 333 R+ Y+P+ GD +GVV E L + +G A + ++ P +F Sbjct: 77 RSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYRADLPAF------ 130
Query: 334 DSSENVEGSEALPQ--GKVLLVEDKAANDGVYR-GEN------VNMGTIVVAEVQSRALV 486 +EA P G V V AA +G + GE V GT+V AEV R L Sbjct: 131 --------AEAAPPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTL- 181
Query: 487 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 GRP+L+ RRL R LA+ R Q+M+ EPI+++I + N GGL +EG Sbjct: 182 SGRPLLSARRLFRRLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEG 229
>tr|Q0DGF0|Q0DGF0_ORYSJ Os05g0535800 protein OS=Oryza sativa subsp. japonica GN=Os05g0535800 PE=4 SV=1 Length = 592
Score = 73.2 bits (178), Expect = 1e-11 Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 12/177 (6%) Frame = +1
Query: 136 GPGQLVRTSEYYEPQEGDIVLGVVTYADEDELSLEIG-GRVPAIMTMRDFQPFTEIGADS 312 G G R YY+P+ GD+ +GVV D L +++G G PA+M ++ P T + Sbjct: 141 GAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGGEPALMLAKEAVPMT---GEE 197
Query: 313 FFKIPDDDSSENVEGSEALPQGKVLLV--------EDKAANDGVYRGEN---VNMGTIVV 459 F + D +S+ + ++ +GKV +V E +G RG + +GT+V Sbjct: 198 FEYLACDVASK--DAAQFAAEGKVGVVVSGGEGQGEATGGRNGKGRGRGSPALGVGTVVF 255
Query: 460 AEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 EV R L GRP+L+ RRL R +A+ RI+Q+ PI+++I + N GGL +EG Sbjct: 256 TEVLGRTL-GGRPLLSARRLFRRVAWHRIKQL---NVPIKVKIFEWNAGGLLTRIEG 308
>tr|A2Y6W7|A2Y6W7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20772 PE=4 SV=1 Length = 536
Score = 67.4 bits (163), Expect = 7e-10 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 32/197 (16%) Frame = +1
Query: 136 GPGQLVRTSEYYEPQEGDIVLGVVTYADEDELSLEIG-GRVPAIMTMRDFQPFTEIGADS 312 G G R YY+P+ GD+ +GVV D L +++G G PA+M ++ P T + Sbjct: 138 GAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGGEPALMLAKEAVPMT---GEE 194
Query: 313 FFKIPDDDSSENVEGSEALPQGKVLLV--------EDKAANDGVYRGEN---VNMGTIVV 459 F + D +S+ + ++ +GKV +V E +G RG + +GT+V Sbjct: 195 FEYLACDVASK--DAAQFAAEGKVGVVVSGGEGQGEATGGRNGKGRGRGSPALGVGTVVF 252
Query: 460 AEVQSRALVEGRPVLTCRRLARSLAFVRIEQI-----------MRTGE---------PIQ 579 EV R L GRP+L+ RRL R +A+ R+ Q+ MR E PI+ Sbjct: 253 TEVLGRTL-GGRPLLSARRLFRRVAWHRVRQLISISISEKMRPMRKDEADTIKQLNVPIK 311
Query: 580 MEINQSNDGGLQGYVEG 630 ++I + N GGL +EG Sbjct: 312 VKIFEWNAGGLLTRIEG 328
>tr|A3B688|A3B688_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018560 PE=4 SV=1 Length = 598
Score = 65.1 bits (157), Expect = 3e-09 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Frame = +1
Query: 184 GDIVLGVVTYADEDELSLEIG-GRVPAIMTMRDFQPFTEIGADSFFKIPDDDSSENVEGS 360 G +GVV D L +++G G PA+M ++ P T + F + D +S+ + + Sbjct: 100 GTFAVGVVVGGDGRTLDIDVGAGGEPALMLAKEAVPMT---GEEFEYLACDVASK--DAA 154
Query: 361 EALPQGKVLLV--------EDKAANDGVYRGEN---VNMGTIVVAEVQSRALVEGRPVLT 507 + +GKV +V E +G RG + +GT+V EV R L GRP+L+ Sbjct: 155 QFAAEGKVGVVVSGGEGQGEATGGRNGKGRGRGSPALGVGTVVFTEVLGRTL-GGRPLLS 213
Query: 508 CRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 RRL R +A+ R+ QI + PI+++I + N GGL +EG Sbjct: 214 ARRLFRRVAWHRVRQIKQLNVPIKVKIFEWNAGGLLTRIEG 254
>tr|A9RDY1|A9RDY1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64823 PE=4 SV=1 Length = 558
Score = 56.6 bits (135), Expect = 1e-06 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 3/159 (1%) Frame = +1
Query: 163 EYYEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFKIPDDDSS 342 EYY P G V GVV + +L ++IG M +++ P + D I DD+ Sbjct: 243 EYYVPICGHRVTGVVVSGNYAKLDMDIGAAKLGQMHVQEILPLDKFQIDQTSWILADDAG 302
Query: 343 ENVEGSEALPQG---KVLLVEDKAANDGVYRGENVNMGTIVVAEVQSRALVEGRPVLTCR 513 E G LP VL E+ + V++GT++ EV GR +L+ R Sbjct: 303 EG--GGAGLPPNGHTHVLYDEEVFTYEAPESPLLVDIGTVLDMEVVG-ITTSGRALLSAR 359
Query: 514 RLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEG 630 + A+ + + RI QI EP ++ I N GL VEG Sbjct: 360 KAAQRIEWNRIMQIKEEDEPFEITITGFNKAGLLARVEG 398
>tr|B8AB73|B8AB73_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02634 PE=4 SV=1 Length = 408
Score = 52.4 bits (124), Expect = 2e-05 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Frame = +1
Query: 169 YEPQEGDIVLGVVTYADEDELSLEIGGRVPAIMTMRDFQPFTEIGADSFFK-IPDDDSSE 345 Y+P+ GD +GVV E L + +G A + ++ P +F + P S Sbjct: 77 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYRADLPAFAEAAPPRPGSV 136
Query: 346 NVEGSEALPQGKVLLVEDKAANDGVYRGENVNMGTIVVAEVQSRALVEGRPVLTCRRLAR 525 V S A +G D+ + V GT+V AEV R L GRP+L+ RRL R Sbjct: 137 GVVASPASGEG------DRKPGERGGGRTLVPPGTVVFAEVLGRTL-SGRPLLSARRLFR 189
Query: 526 SLAFVRIEQIMRTGEP 573 LA+ R Q +R P Sbjct: 190 RLAWHRARQGLRAFLP 205
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