DK948992
Clone id TST38A01NGRL0004_M18
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_M18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CTCATCGCAGCTGCATACAGCAATGGTTTAACAACAAGGGGTCGAATAAATGTGAGGTCT
GCAGGTGGCCACAAATCTTCCAGCTCCCATATCGCCACCCATGCACAATTTTTGGGTTTG
GAGACGGAGCCATTCGTACAGACATGGACCATTGCGGCGATGGCAGGGAAGGGGACAATT
CCATCCGCTCGTGGCTGCACTTCTGATCCTTGTAGCAGGGCTGATGTTTGATGTTCTAAT
ATCATATTACTTGGGGGCCTCTGCTCTTCCTGTGAATATAATCATTGGTGTACTAGTTGT
TCTTGGCTTGGGGACGGGGGCTCGTCTGATCATGGAATGCTGCCATCACCGAAGTGTGAG
TCGAAGCATAAGGAGAATGGAGATTGCTGCTGATATGGATCATCTCCATTCGGCGAATGG
GCTTTAAAAGTTTCCTTTGCCATGTACAGATTTCATAGTTACCTCANAGATTTGTGTAAA
CGAAACGACATGTACATATGGTAAAGCATCGGGGTATATCTTATAGATATGAGGTGTCAA
CCTCCAATTGGGTCTAGAGATGCATCATTGTTTATGTGCGTGTTGGAATGCACATTGG
■■Homology search results ■■ -
sp_hit_id P23085
Definition sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment) OS=Heterodontus francisci
Align length 54
Score (bit) 33.1
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948992|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_M18, 5'
(582 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment) OS=Heter... 33 1.0
sp|P11378|STP2_MOUSE Nuclear transition protein 2 OS=Mus musculu... 33 1.3
sp|Q9A7X8|ATKA_CAUCR Potassium-transporting ATPase A chain OS=Ca... 32 2.3
sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel s... 31 3.9
sp|Q0IMG9|SL11_ORYSJ Protein spotted leaf 11 OS=Oryza sativa sub... 30 8.7
sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa sub... 30 8.7
sp|Q87012|CAPSD_SCSVF Capsid protein OS=Subterranean clover stun... 30 8.7
sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associat... 30 8.8

>sp|P23085|HVC2_HETFR Ig heavy chain C region (Fragment)
OS=Heterodontus francisci PE=2 SV=1
Length = 438

Score = 33.1 bits (74), Expect = 1.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3

Query: 243 LCSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCESKHKENGDCC*YGSSPFGEW 404
LCS +++ + SWL DG D G + SP CE N + P GEW
Sbjct: 129 LCSIIDFHPESITVSWLKDGQPMDSGFVTSPTCEV--NGNFSATSRLTVPAGEW 180


>sp|P11378|STP2_MOUSE Nuclear transition protein 2 OS=Mus musculus
GN=Tnp2 PE=2 SV=2
Length = 117

Score = 32.7 bits (73), Expect = 1.3
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3

Query: 246 CSSCEYNHWCTSCSWLGDGGSSDHGMLPSPKCESKH 353
C+ C +H C SCS G GSS PSP KH
Sbjct: 29 CNQCTCSHHCRSCSQAGHAGSSSS---PSPGPPMKH 61


>sp|Q9A7X8|ATKA_CAUCR Potassium-transporting ATPase A chain
OS=Caulobacter crescentus GN=kdpA PE=3 SV=1
Length = 570

Score = 32.0 bits (71), Expect = 2.3
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -3

Query: 265 LYSQEEQRPPSNMILEHQTSALLQGSEVQPRADGIVPFPAIAAMVHVCT---NGSVS 104
+Y+ E Q PP+ + + TSA ++G EV+ A PA AA V + T NGSV+
Sbjct: 302 VYATETQAPPAQVAAQVDTSANMEGKEVRFGA------PATAAWVAMTTGASNGSVN 352


>sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel
subunit alpha-1H OS=Mus musculus GN=Cacna1h PE=2 SV=2
Length = 2365

Score = 31.2 bits (69), Expect = 3.9
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -3

Query: 256 QEEQRPPSNMILEHQTSALLQGSEVQPRADGIVPFPAIAAMVHVCTNGSVSKPKN 92
+EEQR + +L ++ G+++ + VP+PA+AA V C G ++P++
Sbjct: 38 REEQRGSGSSVLAPESPGTECGADLGADEEQPVPYPALAATVFFCL-GQTTRPRS 91


>sp|Q0IMG9|SL11_ORYSJ Protein spotted leaf 11 OS=Oryza sativa subsp.
japonica GN=SPL11 PE=1 SV=2
Length = 694

Score = 30.0 bits (66), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3

Query: 220 EHQTSALLQGSEVQPRADGIVPFPAIAAMVHVCTNGSVSKPKNCA 86
EH +ALL S + I+ A+ ++VHV NGS+ +N A
Sbjct: 427 EHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAA 471


>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp.
indica GN=SPL11 PE=1 SV=2
Length = 694

Score = 30.0 bits (66), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3

Query: 220 EHQTSALLQGSEVQPRADGIVPFPAIAAMVHVCTNGSVSKPKNCA 86
EH +ALL S + I+ A+ ++VHV NGS+ +N A
Sbjct: 427 EHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAA 471


>sp|Q87012|CAPSD_SCSVF Capsid protein OS=Subterranean clover stunt
virus (strain F) GN=C5 PE=3 SV=1
Length = 169

Score = 30.0 bits (66), Expect = 8.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = -3

Query: 262 YSQEEQRPPSNMILEHQTSAL----LQGSEVQPRADG 164
YS+ +PPS+ ++ H S L + G+EV+P ADG
Sbjct: 18 YSRIAYKPPSSKVVSHVESVLNKRDVTGAEVKPFADG 54


>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated
protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
Length = 3848

Score = 30.0 bits (66), Expect = 8.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1

Query: 381 HISSNLHSPYASTHTSVMAAFHDQTSPRPQAKNN*YTNDYIH 256
HI + P T T + H+ TS +P N YT ++ H
Sbjct: 2722 HIGAQTIDPAGQTPTKQIETIHESTSMKPTDSRNWYTKEWNH 2763


tr_hit_id A7QJ16
Definition tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera
Align length 107
Score (bit) 72.4
E-value 6.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948992|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_M18, 5'
(582 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genom... 72 6e-15
tr|B8BHI5|B8BHI5_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-13
tr|Q8LB32|Q8LB32_ARATH Putative uncharacterized protein OS=Arabi... 65 4e-12
tr|O64633|O64633_ARATH Expressed protein (At2g45530) (Putative u... 65 4e-12
tr|A9PC07|A9PC07_POPTR Putative uncharacterized protein OS=Popul... 62 2e-11
tr|A9TTQ1|A9TTQ1_PHYPA Predicted protein OS=Physcomitrella paten... 57 1e-10
tr|Q9AV56|Q9AV56_ORYSJ Putative uncharacterized protein OSJNBa00... 67 7e-10
tr|Q7XDA5|Q7XDA5_ORYSJ Zinc finger, C3HC4 type family protein, e... 45 2e-06
tr|B4FM27|B4FM27_MAIZE Putative uncharacterized protein OS=Zea m... 43 9e-06
tr|Q869H0|Q869H0_LYMST Voltage-dependent T-type calcium channel ... 38 0.47
tr|B3MAR9|B3MAR9_DROAN GF24644 OS=Drosophila ananassae GN=GF2464... 35 2.3
tr|A9RDF2|A9RDF2_PHYPA Predicted protein (Fragment) OS=Physcomit... 35 2.4
tr|B6PAN7|B6PAN7_BRAFL Putative uncharacterized protein (Fragmen... 35 3.0
tr|Q22KL3|Q22KL3_TETTH Putative uncharacterized protein OS=Tetra... 34 6.8
tr|B7QRD5|B7QRD5_9RHOB Fatty acid desaturase OS=Ruegeria sp. R11... 33 8.8
tr|Q6A839|Q6A839_PROAC Tryptophanyl-tRNA synthetase OS=Propionib... 30 9.0

>tr|A7QJ16|A7QJ16_VITVI Chromosome chr2 scaffold_105, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000470001
PE=4 SV=1
Length = 232

Score = 72.4 bits (176), Expect(2) = 6e-15
Identities = 40/107 (37%), Positives = 53/107 (49%)
Frame = +1

Query: 46 QVATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLI 225
QVA+N+ P S P N+WVWR ++R + + Q RG F P + DVLI
Sbjct: 115 QVASNVSPPESQPSANYWVWRVDPNFRGSNIAQEQARGCFKPLWVALSILIGGLLLDVLI 174

Query: 226 SYYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRRME 366
S LG SALPVN T RL +E CH S+ R +R++
Sbjct: 175 SIVLGVSALPVNIIIGVIVVLGLGTAIRLALEFCHEWSLRRVSQRVD 221



Score = 32.0 bits (71), Expect(2) = 6e-15
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF+ KGSNKCE+C+
Sbjct: 101 WFHTKGSNKCEICQ 114


>tr|B8BHI5|B8BHI5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34060 PE=4 SV=1
Length = 269

Score = 67.0 bits (162), Expect(2) = 6e-13
Identities = 40/112 (35%), Positives = 50/112 (44%)
Frame = +1

Query: 46 QVATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLI 225
QVA N+P P + ++WVWR +Y G R RG F P + DVLI
Sbjct: 151 QVAVNIPPPETQASTSYWVWRVDSAYGRG--RGGHERGWFSPLWVAFAILIGGLLLDVLI 208

Query: 226 SYYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRRMEIAADM 381
S LG SALPVN T RL +ECC RS+ R+ + M
Sbjct: 209 SVSLGVSALPVNIIIGVLIVLGLGTALRLALECCQEWGSRRSMPRLPMDGSM 260



Score = 30.4 bits (67), Expect(2) = 6e-13
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF +GSNKCE+C+
Sbjct: 137 WFRTRGSNKCEICQ 150


>tr|Q8LB32|Q8LB32_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 240

Score = 64.7 bits (156), Expect(2) = 4e-12
Identities = 39/104 (37%), Positives = 49/104 (47%)
Frame = +1

Query: 49 VATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLIS 228
VA N+ P + P N+WVWR SYR + + RG F P M DVLIS
Sbjct: 122 VAVNVTPPETQPTTNYWVWRIDPSYR----QEERERGCFSPLWVAFSILIGGLMLDVLIS 177

Query: 229 YYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRR 360
LG SALPVN T RL +E C+ S+ R++ R
Sbjct: 178 ITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYEWSLRRAVHR 221



Score = 30.0 bits (66), Expect(2) = 4e-12
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF KGSN+CE+C+
Sbjct: 107 WFRTKGSNQCEICQ 120


>tr|O64633|O64633_ARATH Expressed protein (At2g45530) (Putative
uncharacterized protein At2g45530) OS=Arabidopsis
thaliana GN=At2g45530 PE=2 SV=1
Length = 240

Score = 64.7 bits (156), Expect(2) = 4e-12
Identities = 39/104 (37%), Positives = 49/104 (47%)
Frame = +1

Query: 49 VATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLIS 228
VA N+ P + P N+WVWR SYR + + RG F P M DVLIS
Sbjct: 122 VAVNVTPPETQPTTNYWVWRIDPSYR----QEERERGCFSPLWVAFSILIGGLMLDVLIS 177

Query: 229 YYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRR 360
LG SALPVN T RL +E C+ S+ R++ R
Sbjct: 178 ITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYEWSLRRAVHR 221



Score = 30.0 bits (66), Expect(2) = 4e-12
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF KGSN+CE+C+
Sbjct: 107 WFRTKGSNQCEICQ 120


>tr|A9PC07|A9PC07_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 253

Score = 62.0 bits (149), Expect(2) = 2e-11
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +1

Query: 49 VATNLPAPISPPMH-NFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLI 225
VA N+ P S P+ N+WVWR ++R R + RG F P + DVLI
Sbjct: 140 VAVNVSPPESQPIQANYWVWRIDPNFRP----RDRDRGCFSPLWVAFSILIGGLLLDVLI 195

Query: 226 SYYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRRME 366
S LG SALPVN T RL +E CH S R+++R +
Sbjct: 196 SITLGVSALPVNIIIGVIVVLGLGTALRLALEFCHEWSFRRAVQRAD 242



Score = 30.8 bits (68), Expect(2) = 2e-11
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF+ +GSNKCE+C+
Sbjct: 125 WFSTRGSNKCEICQ 138


>tr|A9TTQ1|A9TTQ1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_97000 PE=4 SV=1
Length = 672

Score = 56.6 bits (135), Expect(2) = 1e-10
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 24/133 (18%)
Frame = +1

Query: 49 VATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQG-----------------------RG 159
VA+N+PAP + P+ +FWVWR + G + G +
Sbjct: 292 VASNIPAPATAPVPHFWVWRLGGTNAAGQSQTSNGGIRRVGFQSSLIVNGPVLLVIMKKH 351

Query: 160 QFHPXXXXXXXXXXXXMF-DVLISYYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHR 336
F P +F D + +G +A+P+ T RL++ECCH R
Sbjct: 352 PFIPVMWISLLAFMTYLFVDAFNTSTIGYAAMPIGFFFGVLVVLGLGTAVRLVLECCHER 411

Query: 337 SVSRSIRRMEIAA 375
+V RSI++ME+++
Sbjct: 412 NVERSIQQMELSS 424



Score = 33.1 bits (74), Expect(2) = 1e-10
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF NKG+NKCEVC+
Sbjct: 277 WFKNKGTNKCEVCQ 290


>tr|Q9AV56|Q9AV56_ORYSJ Putative uncharacterized protein
OSJNBa0093B11.14 OS=Oryza sativa subsp. japonica
GN=OSJNBa0093B11.14 PE=4 SV=1
Length = 396

Score = 67.0 bits (162), Expect = 7e-10
Identities = 40/112 (35%), Positives = 50/112 (44%)
Frame = +1

Query: 46 QVATNLPAPISPPMHNFWVWRRSHSYRHGPLRRWQGRGQFHPXXXXXXXXXXXXMFDVLI 225
QVA N+P P + ++WVWR +Y G R RG F P + DVLI
Sbjct: 136 QVAVNIPPPETQASTSYWVWRVDSAYGRG--RGGHERGWFSPLWVAFAILIGGLLLDVLI 193

Query: 226 SYYLGASALPVNXXXXXXXXXXXXTGARLIMECCHHRSVSRSIRRMEIAADM 381
S LG SALPVN T RL +ECC RS+ R+ + M
Sbjct: 194 SVSLGVSALPVNIIIGVLIVLGLGTALRLALECCQEWGSRRSMPRLPMDGSM 245


>tr|Q7XDA5|Q7XDA5_ORYSJ Zinc finger, C3HC4 type family protein,
expressed (Putative uncharacterized protein) OS=Oryza
sativa subsp. japonica GN=LOC_Os10g34030 PE=4 SV=2
Length = 317

Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 27/78 (34%), Positives = 32/78 (41%)
Frame = +1

Query: 148 QGRGQFHPXXXXXXXXXXXXMFDVLISYYLGASALPVNXXXXXXXXXXXXTGARLIMECC 327
Q G F P + DVLIS LG SALPVN T RL +ECC
Sbjct: 82 QASGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECC 141

Query: 328 HHRSVSRSIRRMEIAADM 381
RS+ R+ + M
Sbjct: 142 QEWGSRRSMPRLPMDGSM 159



Score = 30.4 bits (67), Expect(2) = 2e-06
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF +GSNKCE+C+
Sbjct: 57 WFRTRGSNKCEICQ 70


>tr|B4FM27|B4FM27_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 191

Score = 42.7 bits (99), Expect(2) = 9e-06
Identities = 25/72 (34%), Positives = 29/72 (40%)
Frame = +1

Query: 148 QGRGQFHPXXXXXXXXXXXXMFDVLISYYLGASALPVNXXXXXXXXXXXXTGARLIMECC 327
Q G F P + DVLIS LG SALPVN T RL +ECC
Sbjct: 104 QASGWFSPLWVAFAILIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALECC 163

Query: 328 HHRSVSRSIRRM 363
R++ M
Sbjct: 164 QEWGSRRNVGNM 175



Score = 30.4 bits (67), Expect(2) = 9e-06
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2

Query: 8 WFNNKGSNKCEVCR 49
WF +GSNKCE+C+
Sbjct: 79 WFRTRGSNKCEICQ 92


>tr|Q869H0|Q869H0_LYMST Voltage-dependent T-type calcium channel
alpha-1 subunit (Fragment) OS=Lymnaea stagnalis PE=2 SV=1
Length = 1942

Score = 37.7 bits (86), Expect = 0.47
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = -1

Query: 375 SSNLHSPYASTHTSVMAAFHDQTSPRPQAKNN*YTNDYIHRKSRGPQVI*Y*NIKHQPCY 196
S +++ PY H A+ SP P +N+ T + +S PQ + HQP
Sbjct: 1788 SYSINEPYMELHAGCRAS-----SPLPSPRNSQQTLPGMFTRSASPQAHHIQSPSHQPQQ 1842

Query: 195 KDQKCSHERMELSPSLPSPQWSMSV 121
Q C H + LS ++PS ++S+
Sbjct: 1843 PSQLCHHYQSPLSDTVPSISATVSI 1867