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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949007
Clone id TST38A01NGRL0004_N10
Library
Length 701
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_N10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAATTTTATGCAAGGTAGAGAAAATACTATTTGATAGATCTCAATGCAAACCGGTTAGTT
TCATCTTACTTCACCTTCAATTATTTTTATTCCAAGTTTTGAAATATCTTTGCTACGCTT
AGTGGGCGACTCGTTGAAAATACAAATTTTTGCCCGTAAAATAAAAGACCTAATTGAAAG
TGAAAGTTAAACCCTCCTTTTGTTGATCAGTATTCAATAAACAAGCCCTCAATGCAGGGG
AAAATTAGAACTTCTTTCACCACAGAAACTTTCTTTCTCTTTCCATCCGTAGAAAATTTT
TCTATGGAAAAGCCGGAATCAGGAAGCACTGTAATAGTATTTCACGGAAATTTGAGGAAC
TAAGATATCTCAAATTTTTTCCTCGCAACTAGTCGTATGGTTAATTGTCTAACTCTTAAT
ATATTACGTAATGTAGCATGACTACAAAAAAGTCAGGGGAGAGCTTTGAGTCGACTAATA
CTGGGAACGCCGACTCAATAAAACTGAGATAGAATGTAGTACTACAGCTTCGTTGTCGAA
AGAGAGAACCTAAACGTCTGCTCAAAAAGATTGAAACAACGAGGAAACTTCCGAATCTGA
TTCAACAGTGAATAGTGAGATCTGGTAGTTGGGATGGCGAGGGAAGCTGACAGTTTTTTC
TTTGGATCTAACAAGAAAAAAAAAAGTAAAGCTCACTCTCG
■■Homology search results ■■ -
sp_hit_id Q9GF34
Definition sp|Q9GF34|MATK_MATIN Maturase K OS=Matthiola incana
Align length 60
Score (bit) 31.2
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949007|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_N10, 5'
         (701 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GF34|MATK_MATIN Maturase K OS=Matthiola incana GN=matK PE=3...    31   5.6  
sp|A4QLH6|MATK_LOBMA Maturase K OS=Lobularia maritima GN=matK PE...    31   5.6  
sp|Q9GF45|MATK_ARATU Maturase K OS=Arabis turrita GN=matK PE=3 SV=1    31   5.6  
sp|Q9GF36|MATK_LEPCM Maturase K OS=Lepidium campestre GN=matK PE...    31   7.4  
sp|Q9GF62|MATK_BARVU Maturase K OS=Barbarea vulgaris GN=matK PE=...    31   7.4  
sp|A4QK00|MATK_ARAHI Maturase K OS=Arabis hirsuta GN=matK PE=3 SV=1    31   7.4  
sp|Q9GF40|MATK_ARABL Maturase K OS=Arabis blepharophylla GN=matK...    31   7.4  
sp|Q9GF63|MATK_ARAAL Maturase K OS=Arabis alpina GN=matK PE=3 SV=1     31   7.4  
sp|Q03942|RKM2_YEAST Ribosomal N-lysine methyltransferase 2 OS=S...    30   9.6  
sp|Q7IZ70|MATK_RORPA Maturase K OS=Rorippa palustris GN=matK PE=...    30   9.6  
sp|Q9G1H4|MATK_RORAM Maturase K OS=Rorippa amphibia GN=matK PE=3...    30   9.6  
sp|A4QKR2|MATK_CRUWA Maturase K OS=Crucihimalaya wallichii GN=ma...    30   9.6  
sp|A4QKH3|MATK_CAPBU Maturase K OS=Capsella bursa-pastoris GN=ma...    30   9.6  
sp|Q9GF51|MATK_ARAHA Maturase K OS=Arabidopsis halleri GN=matK P...    30   9.6  
sp|Q9GF59|MATK_ARAGL Maturase K OS=Arabis glabra GN=matK PE=3 SV=1     30   9.6  
sp|Q9GF32|MATK_ALLPE Maturase K OS=Alliaria petiolata GN=matK PE...    30   9.6  

>sp|Q9GF34|MATK_MATIN Maturase K OS=Matthiola incana GN=matK PE=3
           SV=1
          Length = 504

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKKLKKSYNLQSIHSIFPFLED-KLSHFNYVLDVLIPYPIHLEI 163


>sp|A4QLH6|MATK_LOBMA Maturase K OS=Lobularia maritima GN=matK PE=3
           SV=1
          Length = 504

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLED-KLSHFNYVVDVLIPYPIHLEI 163


>sp|Q9GF45|MATK_ARATU Maturase K OS=Arabis turrita GN=matK PE=3 SV=1
          Length = 504

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSYFEGKKFKKSYNLQSIHSIFPFLED-KLSHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF36|MATK_LEPCM Maturase K OS=Lepidium campestre GN=matK PE=3
           SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQFKKSYNLQSIHSIFPFLED-KLSHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF62|MATK_BARVU Maturase K OS=Barbarea vulgaris GN=matK PE=3
           SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLED-KLSHFNYVLDVVIPYPIHLEI 163


>sp|A4QK00|MATK_ARAHI Maturase K OS=Arabis hirsuta GN=matK PE=3 SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLED-KLSHFNYVLDVLIPYPIHLEV 163


>sp|Q9GF40|MATK_ARABL Maturase K OS=Arabis blepharophylla GN=matK
           PE=3 SV=1
          Length = 502

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 103 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLED-KLSHFNYVLDVLIPYPIHLEV 161


>sp|Q9GF63|MATK_ARAAL Maturase K OS=Arabis alpina GN=matK PE=3 SV=1
          Length = 506

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D K S   +V  V++ Y I+ E+
Sbjct: 107 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLED-KFSHSNYVLDVLIPYPIHLEI 165


>sp|Q03942|RKM2_YEAST Ribosomal N-lysine methyltransferase 2
           OS=Saccharomyces cerevisiae GN=RKM2 PE=1 SV=1
          Length = 479

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +1

Query: 232 MQGKIRTSFT----TETFFLFPSVENFSMEKPESGSTVIVFHGNLRN*DI 369
           M+GK+    T    ++ F++ P++     E PE+G  +++ HG++R  DI
Sbjct: 1   MEGKVDVLLTWLKKSDKFYIAPNIS--ICESPETGRGIVLSHGSIRKNDI 48


>sp|Q7IZ70|MATK_RORPA Maturase K OS=Rorippa palustris GN=matK PE=3
           SV=1
          Length = 504

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 583 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFFV--VMLHYVIY*EL 410
           ++V I  S RLGS F  +    ++ L  I S FP L D KLS   +V  V++ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQFKKSYNLQSIHSIFPFLED-KLSHFNYVLDVVIPYPIHLEI 163
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949007|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_N10, 5'
         (701 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******