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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949028
Clone id TST38A01NGRL0004_O07
Library
Length 686
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_O07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGAGGACTAAAAGGCCTCTACAGTCTACTGCTTGTGAAAGAGCTCTCCTAGAGACTCATC
CCTCCTCGTGGTCTCTGCTACCCACAACCTCCCCACATCGCCTGCACAAATAATGGCAGC
TTTTCCTCAACTCTAGCTTCTCGTCTCGTTCTCCCCTTTAATTGTCTCATCAGCATCAGA
CAGCAGTTTCGCAGTAGCTATCACCGTCTCCTCTGCTCGCCTTTCCATAAATAGCCTCGA
GCCTATGGAAAGAGCAAGCTTTTGAGGAACGTCGACCTACGTCTGCAGCTTATAGAGCTC
ATGCCTGTAGCTTAATCTTCTGAAAACCCTTCAAACAAGGCTCTCCTGCAGCGGCACCTG
AAGCCATGAAGTACCTCCGCTCCGCCGTTGTCTGCTGTTTAGCTCTAGTGCTTGTGTTAG
CTGTGCAAGTATGGTTTCGGCAGCCCCACTTCAGCCGATGCCCTGGCTGGTTTGCTTCCT
GCAGAGAGCCCTCGTCCCTCTTCAGCTACAAGCTCTCCCTTTTTCAGAAGGGCTCACGTG
AGGAGCAAGCTAAACGAGCGCTTCCTCAACATCCTCTTGATCCCCTCACCTTCTCAGAAA
TTCAGCAGGTGCATACCGTTCTCACCAATTCGTCTGTTTCTGCAAAAACGAATCGAAAGT
ATCTTCGCAAAGCAGGTAGCAAGCTC
■■Homology search results ■■ -
sp_hit_id Q8H1H9
Definition sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana
Align length 22
Score (bit) 35.0
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_O07, 5'
         (686 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thalian...    35   0.37 
sp|Q9WX75|BCSA5_ACEXY Putative cellulose synthase 3 OS=Acetobact...    31   7.1  
sp|Q9RBJ2|BCSA4_ACEXY Putative cellulose synthase 2 OS=Acetobact...    31   7.1  

>sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana
           GN=At1g62810 PE=2 SV=1
          Length = 712

 Score = 35.0 bits (79), Expect = 0.37
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 564 PQHPLDPLTFSEIQQVHTVLTN 629
           P HPLDPLT  EI +V T+L+N
Sbjct: 58  PHHPLDPLTVREINRVRTILSN 79


>sp|Q9WX75|BCSA5_ACEXY Putative cellulose synthase 3 OS=Acetobacter
           xylinus GN=bcsABII-B PE=3 SV=1
          Length = 1518

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 498 GTRALCRKQTSQGIG*SGAAETILAQLTQALELNSRQRRSGGTSWLQVPLQESL 337
           G+ A+ R++   GIG   A ET+      AL++   QRR  GT++L+ PL   L
Sbjct: 306 GSCAIIRREAVMGIG-GFATETVTEDAHTALKM---QRRGWGTAYLREPLAAGL 355


>sp|Q9RBJ2|BCSA4_ACEXY Putative cellulose synthase 2 OS=Acetobacter
           xylinus GN=bcsABII-A PE=3 SV=1
          Length = 1518

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 498 GTRALCRKQTSQGIG*SGAAETILAQLTQALELNSRQRRSGGTSWLQVPLQESL 337
           G+ A+ R++   GIG   A ET+      AL++   QRR  GT++L+ PL   L
Sbjct: 306 GSCAIIRREAVMGIG-GFATETVTEDAHTALKM---QRRGWGTAYLREPLAAGL 355
tr_hit_id B8BKH0
Definition tr|B8BKH0|B8BKH0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 62
Score (bit) 36.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_O07, 5'
         (686 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BKH0|B8BKH0_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.5  
tr|A7QKE1|A7QKE1_VITVI Copper amine oxidase OS=Vitis vinifera GN...    36   2.6  
tr|B8LKL1|B8LKL1_PICSI Putative uncharacterized protein OS=Picea...    35   4.5  
tr|A8L8F0|A8L8F0_FRASN Asp-tRNAAsn/Glu-tRNAGln amidotransferase ...    35   5.9  
tr|A7NWM0|A7NWM0_VITVI Chromosome chr5 scaffold_2, whole genome ...    35   5.9  
tr|A5BR05|A5BR05_VITVI Copper amine oxidase OS=Vitis vinifera GN...    35   5.9  
tr|A7IF76|A7IF76_XANP2 AsmA family protein OS=Xanthobacter autot...    34   7.7  
tr|Q2R4C6|Q2R4C6_ORYSJ NB-ARC domain containing protein, express...    34   7.7  
tr|Q0ISQ9|Q0ISQ9_ORYSJ Os11g0479100 protein OS=Oryza sativa subs...    34   7.7  
tr|A3CB89|A3CB89_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.7  

>tr|B8BKH0|B8BKH0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36094 PE=4 SV=1
          Length = 375

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -3

Query: 213 EETVIATAKLLSDADETIKGENETRS*S*GKAAIICAGDVGRLWVAETTRRDESLGELFH 34
           EE   A  KLL+D  ETI GEN +        AI+  G +G+  +A+    D+++ E F 
Sbjct: 233 EEDTSALVKLLTDDKETIHGENNSL-----LLAIVGVGGIGKTTLAKNIFNDDAIQEKFD 287

Query: 33  KQ 28
           K+
Sbjct: 288 KK 289


>tr|A7QKE1|A7QKE1_VITVI Copper amine oxidase OS=Vitis vinifera
           GN=GSVIVT00001079001 PE=3 SV=1
          Length = 727

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +3

Query: 561 LPQHPLDPLTFSEIQQVHTVLTNSSVSAKTNRKY 662
           +P HPLDPLT  EI +V T+L +S    K +++Y
Sbjct: 74  VPHHPLDPLTVQEINRVRTIL-SSHAPLKASKRY 106


>tr|B8LKL1|B8LKL1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 730

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
 Frame = +3

Query: 426 QVWFRQPHFSR------CPGWFASCREPSSLFSYKLSLFQKGSREEQAKR----ALPQHP 575
           + W R P          C  + + C   + + S   +  Q+   ++Q K      + +HP
Sbjct: 25  RTWIRLPSLGSAKIELDCSEYGSWCTFKNRIQSRSGAFIQRTKPKQQQKADHESEVAKHP 84

Query: 576 LDPLTFSEIQQVHTVLTNSSV 638
           LDPLT  EIQ+V +++  +S+
Sbjct: 85  LDPLTLREIQRVQSIMQKTSI 105


>tr|A8L8F0|A8L8F0_FRASN Asp-tRNAAsn/Glu-tRNAGln amidotransferase A
           subunit and related amidase-like protein OS=Frankia sp.
           (strain EAN1pec) GN=Franean1_4240 PE=4 SV=1
          Length = 156

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 515 ELVAEEGRG--LSAGSKPARASAEVGLPKPYLHS*H 414
           +LVA  GRG   +AG +PAR  A +G P P +H+ H
Sbjct: 120 QLVAAHGRGGPAAAGRRPARTGAALGAPHPAVHAGH 155


>tr|A7NWM0|A7NWM0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019977001
           PE=3 SV=1
          Length = 676

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 501 FSYKLSLFQKGSREEQAKRALPQHPLDPLTFSEIQQVHTVLTNS 632
           F++ LS+F   S           HPLDPLT  E+ QV T++T S
Sbjct: 14  FTFPLSIFSAASIHFH-------HPLDPLTLQELDQVRTIITAS 50


>tr|A5BR05|A5BR05_VITVI Copper amine oxidase OS=Vitis vinifera
           GN=VITISV_040530 PE=3 SV=1
          Length = 1265

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 501 FSYKLSLFQKGSREEQAKRALPQHPLDPLTFSEIQQVHTVLTNS 632
           F++ LS+F   S           HPLDPLT  E+ QV T++T S
Sbjct: 14  FTFPLSIFSAASIHFH-------HPLDPLTLQELDQVRTIITAS 50


>tr|A7IF76|A7IF76_XANP2 AsmA family protein OS=Xanthobacter
            autotrophicus (strain ATCC BAA-1158 / Py2) GN=Xaut_1421
            PE=3 SV=1
          Length = 1331

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +1

Query: 433  GFGSPTSADALAGLLPAESPRPSSATSSPFFRRAHVRSKLNERFLNILLIPSPSQKFSRC 612
            GFG+PT++ A     PAE    S A SSP    A    +  ER   ++  P+P ++  R 
Sbjct: 1240 GFGAPTASGAAGTATPAE----SQAQSSPSRPEARATPEAAERHTPVVRQPAP-RRTERA 1294

Query: 613  IPFSPIRLF 639
             P  P R+F
Sbjct: 1295 QPEPPPRVF 1303


>tr|Q2R4C6|Q2R4C6_ORYSJ NB-ARC domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g28950 PE=4
           SV=2
          Length = 1070

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 213 EETVIATAKLLSDADETIKGENETRS*S*GKAAIICAGDVGRLWVAETTRRDESLGELFH 34
           EE   A  KLL+D  ETI  EN +        AI+  G +G+  +A+    D+++ E F 
Sbjct: 172 EEDTSALVKLLTDDKETIHAENNSL-----LLAIVGVGGIGKTTLAKNIFNDDAIQEKFD 226

Query: 33  KQ 28
           K+
Sbjct: 227 KK 228


>tr|Q0ISQ9|Q0ISQ9_ORYSJ Os11g0479100 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0479100 PE=4 SV=1
          Length = 1114

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 213 EETVIATAKLLSDADETIKGENETRS*S*GKAAIICAGDVGRLWVAETTRRDESLGELFH 34
           EE   A  KLL+D  ETI  EN +        AI+  G +G+  +A+    D+++ E F 
Sbjct: 216 EEDTSALVKLLTDDKETIHAENNSL-----LLAIVGVGGIGKTTLAKNIFNDDAIQEKFD 270

Query: 33  KQ 28
           K+
Sbjct: 271 KK 272


>tr|A3CB89|A3CB89_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032561 PE=4 SV=1
          Length = 1020

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 213 EETVIATAKLLSDADETIKGENETRS*S*GKAAIICAGDVGRLWVAETTRRDESLGELFH 34
           EE   A  KLL+D  ETI  EN +        AI+  G +G+  +A+    D+++ E F 
Sbjct: 172 EEDTSALVKLLTDDKETIHAENNSL-----LLAIVGVGGIGKTTLAKNIFNDDAIQEKFD 226

Query: 33  KQ 28
           K+
Sbjct: 227 KK 228