NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949031
Clone id TST38A01NGRL0004_O11
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_O11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGTTCATTTGCTGGTAACGGGAGCTAACGTTGTCCAAGTCATCGAGGACAGCCAAATGCA
GGCGCTTTTAGCAGCAAATGATGTCTCCTTTGGCGGCGATGATGAGCTTGGGGCGAACAG
CGACGATGAGGGAGTCGCCCTAAAGCATACGTTGAGGAGAAAGAGCAAGAAGAGGAAAGC
TGCAGAAAGCTGGGAAAGCATGAAGCTGGCTGATGGAGCAATTGCTAGAGTCAGTGATGT
AGAGGGCAATGAGGGTGCTTGTGAAAGCAAGGAAACTGTGCCAAGCTTTGGCCACAAAAG
GGAAGCTGAAGCAATTGCTGGATCAAGTGATAGCAGTAGTGGTAGCGGCAGTGATAACGA
AGAATTGAGCGATGAGGGGGAAGACTCAATAGATCAAGATGGAGAGAAGAGAATAGATCA
ATCTACAGCTTTTGGAAGAGCTTTTCGAAAGATCATGAAAAAGAAGTTGCCCTCATCTGA
CCTCAGTGAGGCTATGAGTCCCATTCTAAGTGCTCACAAACAACTCGTAGCCNAGAAATT
GGAGGAGGCTGCAGAAGGACAAAAGAAAAGAAGTGAAAGCAAAAAGGAAAAGCAAGCTCT
TCGGGAGAAAGGCCATCTTGTCCCAGCTCCATTTGCTGCTGCAAAAGATAAAGAGTTGAT
TAAGCTTGCC
■■Homology search results ■■ -
sp_hit_id A4JPY1
Definition sp|A4JPY1|MHPA1_BURVG 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
Align length 39
Score (bit) 31.6
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949031|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_O11, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4JPY1|MHPA1_BURVG 3-(3-hydroxy-phenyl)propionate/3-hydroxyci...    32   4.0  
sp|Q9SLC4|ATL2K_ARATH RING-H2 finger protein ATL2K OS=Arabidopsi...    30   8.8  

>sp|A4JPY1|MHPA1_BURVG
           3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid
           hydroxylase 1 OS=Burkholderia vietnamiensis (strain G4 /
           LMG 22486) GN=mhpA1 PE=3 SV=1
          Length = 615

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 200 MKLADGAIARVSDVEGNEGACESKETVPSFGHKREAEAI 316
           +++ADG+I R+ D  GN  A  S  T P+FG   EA  I
Sbjct: 476 VRVADGSIVRLDDAIGNRFAILSWGTDPTFGLTPEARRI 514


>sp|Q9SLC4|ATL2K_ARATH RING-H2 finger protein ATL2K OS=Arabidopsis
           thaliana GN=ATL2K PE=2 SV=1
          Length = 217

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -1

Query: 205 LHAFPAF--CSFPLLALSPQRML*GDSLIVAVRPKLIIAAKGDIICC*KRLHLAVLDDLD 32
           LH   AF   SF +++  P+R L  DSL++A  P  ++  K D+      + L++L++ D
Sbjct: 54  LHRRSAFQDLSFSVVSQPPKRGL--DSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKD 111

Query: 31  N 29
           N
Sbjct: 112 N 112
tr_hit_id A9NSK7
Definition tr|A9NSK7|A9NSK7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 95
Score (bit) 65.5
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949031|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_O11, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NSK7|A9NSK7_PICSI Putative uncharacterized protein OS=Picea...    65   3e-09
tr|Q53LZ3|Q53LZ3_ORYSJ Os11g0266000 protein OS=Oryza sativa subs...    64   1e-08
tr|A3CAC1|A3CAC1_ORYSJ Putative uncharacterized protein OS=Oryza...    64   1e-08
tr|A2ZD80|A2ZD80_ORYSI Putative uncharacterized protein OS=Oryza...    64   1e-08
tr|A9TKH9|A9TKH9_PHYPA Predicted protein OS=Physcomitrella paten...    63   1e-08
tr|B4FYQ9|B4FYQ9_MAIZE Putative uncharacterized protein OS=Zea m...    61   6e-08
tr|A7Q2X0|A7Q2X0_VITVI Chromosome chr12 scaffold_47, whole genom...    53   2e-05
tr|B8A1S3|B8A1S3_MAIZE Putative uncharacterized protein OS=Zea m...    53   2e-05
tr|B6T9B0|B6T9B0_MAIZE Putative uncharacterized protein OS=Zea m...    53   2e-05
tr|Q9LUB0|Q9LUB0_ARATH Genomic DNA, chromosome 5, P1 clone:MIF21...    44   0.007
tr|B6EUA7|B6EUA7_ARATH Putative uncharacterized protein At5g4824...    44   0.007
tr|B3H5R1|B3H5R1_ARATH Uncharacterized protein At5g48240.1 OS=Ar...    44   0.007
tr|A5ADW8|A5ADW8_VITVI Putative uncharacterized protein OS=Vitis...    39   0.23 

>tr|A9NSK7|A9NSK7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 334

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
 Frame = +2

Query: 398 DGEKRIDQ----STAFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXX 565
           DGE R+ Q    S  F  AF +IM+KK+      +A+ P+LSAHK+L+A KL+E AE   
Sbjct: 117 DGETRVVQFAEGSNGFRAAFSRIMEKKVAD----DALGPVLSAHKKLIAKKLDEEAE-FK 171

Query: 566 XXXXXXXXXXALREKGHLVPAPFAAAKDKELIKLA 670
                      LREKGH+ P  F  AK+K LI+LA
Sbjct: 172 VKSEAKKEKRLLREKGHVKPEIFFDAKEKSLIRLA 206


>tr|Q53LZ3|Q53LZ3_ORYSJ Os11g0266000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0266000 PE=2 SV=1
          Length = 310

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 39/81 (48%), Positives = 45/81 (55%)
 Frame = +2

Query: 428 AFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALRE 607
           AF  AF KIM KKLP   L     PILSAHK+LVA KL E AE                E
Sbjct: 121 AFRVAFTKIMAKKLPDDPLG----PILSAHKKLVAAKLAEDAEEHKPKGEGRREKRMAAE 176

Query: 608 KGHLVPAPFAAAKDKELIKLA 670
           KGH++P     +K+KELIK+A
Sbjct: 177 KGHVIPTNHLDSKEKELIKIA 197


>tr|A3CAC1|A3CAC1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032243 PE=4 SV=1
          Length = 278

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 39/81 (48%), Positives = 45/81 (55%)
 Frame = +2

Query: 428 AFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALRE 607
           AF  AF KIM KKLP   L     PILSAHK+LVA KL E AE                E
Sbjct: 121 AFRVAFTKIMAKKLPDDPLG----PILSAHKKLVAAKLAEDAEEHKPKGEGRREKRMAAE 176

Query: 608 KGHLVPAPFAAAKDKELIKLA 670
           KGH++P     +K+KELIK+A
Sbjct: 177 KGHVIPTNHLDSKEKELIKIA 197


>tr|A2ZD80|A2ZD80_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35743 PE=4 SV=1
          Length = 317

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 39/81 (48%), Positives = 45/81 (55%)
 Frame = +2

Query: 428 AFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALRE 607
           AF  AF KIM KKLP   L     PILSAHK+LVA KL E AE                E
Sbjct: 121 AFRVAFTKIMAKKLPDDPLG----PILSAHKKLVAAKLAEDAEEHKPKGEGRREKRMAAE 176

Query: 608 KGHLVPAPFAAAKDKELIKLA 670
           KGH++P     +K+KELIK+A
Sbjct: 177 KGHVIPTNHLDSKEKELIKIA 197


>tr|A9TKH9|A9TKH9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170589 PE=4 SV=1
          Length = 550

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 36/91 (39%), Positives = 50/91 (54%)
 Frame = +2

Query: 398 DGEKRIDQSTAFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXX 577
           DG+    +S+A+ RAF KI++ K      +    P+L+A + LVA KL E AE       
Sbjct: 243 DGKDDATKSSAYSRAFSKILQSKAAKESDT---GPVLAARQTLVARKLNEEAEDTKEKKE 299

Query: 578 XXXXXXALREKGHLVPAPFAAAKDKELIKLA 670
                  LREK HL+P  +A  K+KEL+KLA
Sbjct: 300 SKKEKRELREKAHLIPQTYANTKEKELVKLA 330


>tr|B4FYQ9|B4FYQ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 322

 Score = 61.2 bits (147), Expect = 6e-08
 Identities = 38/81 (46%), Positives = 43/81 (53%)
 Frame = +2

Query: 428 AFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALRE 607
           AF  AF KIM KKLP   L     PILSAHK LVA KL E  E                E
Sbjct: 133 AFRVAFLKIMAKKLPDDPLG----PILSAHKTLVAAKLAEEVEEHKPKREARKEKRVAAE 188

Query: 608 KGHLVPAPFAAAKDKELIKLA 670
           KGH++P     +K+KELIK+A
Sbjct: 189 KGHVIPKDHLDSKEKELIKVA 209


>tr|A7Q2X0|A7Q2X0_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029062001
           PE=4 SV=1
          Length = 274

 Score = 53.1 bits (126), Expect = 2e-05
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
 Frame = +2

Query: 392 DQDGE------KRIDQSTAFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAA 553
           D++GE      K  +   AF  AF+KI+KK +  SD+S  + P+LS HK+LVA KL E  
Sbjct: 68  DEEGEIQPGITKLTEGCRAFRLAFKKIIKKNV--SDIS--LGPVLSGHKKLVAEKLAEEE 123

Query: 554 EGXXXXXXXXXXXXALREKGHLVPAPFAAAKDKELIKLA 670
                          L EKGH+ PA F  + +K LI +A
Sbjct: 124 ADQKVKGDVKKEKHLLGEKGHVKPANFLDSHEKFLIGVA 162


>tr|B8A1S3|B8A1S3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 181

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 32/72 (44%), Positives = 37/72 (51%)
 Frame = +2

Query: 455 MKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALREKGHLVPAPF 634
           M KKLP   L     PILSAHK LVA KL E  E                EKGH++P   
Sbjct: 1   MAKKLPDDPLG----PILSAHKTLVAAKLAEEVEEHKPKREARKEKRVAAEKGHVIPKDH 56

Query: 635 AAAKDKELIKLA 670
             +K+KELIK+A
Sbjct: 57  LDSKEKELIKVA 68


>tr|B6T9B0|B6T9B0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 181

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 32/72 (44%), Positives = 37/72 (51%)
 Frame = +2

Query: 455 MKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXXALREKGHLVPAPF 634
           M KKLP   L     PILSAHK LVA KL E  E                EKGH++P   
Sbjct: 1   MAKKLPDDPLG----PILSAHKTLVAAKLAEEVEEHKPKREARKEKRVAAEKGHVIPKDH 56

Query: 635 AAAKDKELIKLA 670
             +K+KELIK+A
Sbjct: 57  LDSKEKELIKVA 68


>tr|Q9LUB0|Q9LUB0_ARATH Genomic DNA, chromosome 5, P1 clone:MIF21
           OS=Arabidopsis thaliana GN=At5g48240 PE=4 SV=1
          Length = 339

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = +2

Query: 416 DQSTAFGRAFRKIMKKKLPSSDLSEAMSPILSAHKQLVAXKLEEAAEGXXXXXXXXXXXX 595
           D   AF  AF+ IMKK    +   + + P+LSAHK L+  KL E                
Sbjct: 126 DGCNAFKIAFKAIMKK----TKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKAKH 181

Query: 596 ALREKGHLVPAPFAAAKDKELIKLA 670
            + EKGH+ P  +  + +K LI +A
Sbjct: 182 LIAEKGHVKPGSYLDSHEKILIGVA 206