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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949045
Clone id TST38A01NGRL0004_P01
Library
Length 680
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_P01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCCAGCGTTCCATTGTAACTCAAAATGTAAGTGTTCTTTTTCTGCAGGCTCGGATGGCTG
GCCATGGGGGCGCAGTTGTGCGAGCGGCTGCGGCAGCGGTCGTGAAGGAAAAGAAGAAGA
AGGTATCTCCGAGGAAGCTGCTGATGCAGCGGAAGGCAGAGCAGGTTGCAGCTGAGGCCT
CTGCGTCCCTGCTCTTTCACTGTAGCGGTGTCAATTGCAAGCAGTGGCGAGAGCTTAAGA
ACTCGCTCGCCACCATCCAAGGAAAGTCCCTCTTTCAACCCAATTTCAAGAGCAGCCATT
TTAGCCCCTTTGCAGAGAAGATCGCCTCCTCCCCGGGCCCCCTCTGCCTGCTTTACTTAG
GTGAAGGTGCCTCTCAGGATAAGCTCTCCAAGCTTTTACCCCCTACTTCAATGAGCGACA
GCATGCTTCTCCTTTTTGGGCAGCAGCAATCGAGCATCCTCAACCATGTGGATGTGAAAA
AGGCGACCTCGTTGGACCTTGTCTCAGTCTACCGCCGTAGTGTATTCTCCACCCTCTTCA
ACCCTATGGTTTTCTTTTCGGGCCTTGACAGAATGAAAAGTATCAGCGAATCGGGGAGTG
CCGCTTCTGCAAATGAAGAGGTGAGCAGTACAGCCCCAAGCTGATCCAGATCTTTACATC
ATTCTTTGGTGAGAGAGCTT
■■Homology search results ■■ -
sp_hit_id P38450
Definition sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha
Align length 128
Score (bit) 117.0
E-value 6.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949045|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_P01, 5'
         (680 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1...   117   6e-26
sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilag...    31   6.9  
sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila ...    31   6.9  
sp|Q7MQJ7|DNAA_VIBVY Chromosomal replication initiator protein d...    31   6.9  
sp|Q8DDI9|DNAA_VIBVU Chromosomal replication initiator protein d...    31   6.9  

>sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1
           OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1
          Length = 168

 Score =  117 bits (293), Expect = 6e-26
 Identities = 57/128 (44%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
 Frame = +3

Query: 189 LLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKSSHFSP-----FAEKIASSPGPLCLL 353
           LLFHCSG+  +QWR++KN L TI+GK+LF+P  K  +  P     +  ++ASS GP C+L
Sbjct: 31  LLFHCSGLTSRQWRQIKNILCTIKGKTLFKPKEKKQNILPNNQGDWIAQLASSAGPTCIL 90

Query: 354 YLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKATSLDLVSVYRRSVFST 533
           YL + A  +  S+LLP  S S +++LL+GQ +S++ NH+D+KKAT+L+  SV+++ +F  
Sbjct: 91  YLAKEAPNNTWSQLLPSASYSQNLVLLYGQDRSTVFNHMDIKKATTLETTSVFQQ-LFGF 149

Query: 534 LFNPMVFF 557
           +F P   F
Sbjct: 150 MFLPGACF 157


>sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago
           maydis GN=SEC24 PE=3 SV=1
          Length = 995

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 501 QGPTRSPFSHPHG*GCSIAAAQKGEACCRSLK*GVKAWRAYPERHL 364
           +GP+ SP S  HG G  ++    G     S+  G    RAYP  HL
Sbjct: 76  RGPSLSPISQ-HGPGAPVSPPSAGSPAPASIGPGASRRRAYPTAHL 120


>sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila
           virilis GN=salm PE=2 SV=1
          Length = 1402

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 324 ASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSS--ILNHVDVKKATSLD 497
           A S G    ++  + +SQD L+KL       ++M L FG   SS  I NH D+ +  SLD
Sbjct: 332 AKSSGASAKIFGEQESSQDALNKL----KEMENMPLPFGADLSSSIITNHDDLPEPNSLD 387

Query: 498 LVSVYRRSVFST 533
           L+    + V  +
Sbjct: 388 LLQKRTQEVLDS 399


>sp|Q7MQJ7|DNAA_VIBVY Chromosomal replication initiator protein dnaA
           OS=Vibrio vulnificus (strain YJ016) GN=dnaA PE=3 SV=1
          Length = 468

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
 Frame = +3

Query: 150 RKAEQVAAEASASLLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKSSHF--------- 302
           R    VAAE+SA           K W +   ++A I  +S   P  K ++F         
Sbjct: 92  RTPADVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNFVEGKSNQLG 151

Query: 303 SPFAEKIASSPG----PLCLLYLGEGASQDKLSKLLPPTSMSD--SMLLLFGQQQSSILN 464
              A ++A +PG    PL  LY G G  +  L   +    + +  +  +++   +  + +
Sbjct: 152 LAAARQVADNPGGAYNPL-FLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQD 210

Query: 465 HVDVKKATSLDLVSVYRRSVFSTLFNPMVFFSGLDR 572
            V   +  +++    Y RSV + L + + FF+  +R
Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 246


>sp|Q8DDI9|DNAA_VIBVU Chromosomal replication initiator protein dnaA
           OS=Vibrio vulnificus GN=dnaA PE=3 SV=2
          Length = 468

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
 Frame = +3

Query: 150 RKAEQVAAEASASLLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKSSHF--------- 302
           R    VAAE+SA           K W +   ++A I  +S   P  K ++F         
Sbjct: 92  RTPADVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNFVEGKSNQLG 151

Query: 303 SPFAEKIASSPG----PLCLLYLGEGASQDKLSKLLPPTSMSD--SMLLLFGQQQSSILN 464
              A ++A +PG    PL  LY G G  +  L   +    + +  +  +++   +  + +
Sbjct: 152 LAAARQVADNPGGAYNPL-FLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQD 210

Query: 465 HVDVKKATSLDLVSVYRRSVFSTLFNPMVFFSGLDR 572
            V   +  +++    Y RSV + L + + FF+  +R
Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 246
tr_hit_id Q1XGB8
Definition tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 OS=Physcomitrella patens
Align length 143
Score (bit) 124.0
E-value 7.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949045|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_P01, 5'
         (680 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 O...   124   7e-27
tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b ...    80   1e-13
tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf15...    69   4e-10
tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine...    37   0.89 
tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 P...    35   3.4  
tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine...    35   4.4  
tr|Q8FUC6|Q8FUC6_COREF Putative uncharacterized protein OS=Coryn...    34   7.5  
tr|Q8M1E4|Q8M1E4_CHAGL Putative diaminopimelate decarboxylase OS...    34   9.8  

>tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187
           OS=Physcomitrella patens GN=ORF187 PE=4 SV=1
          Length = 187

 Score =  124 bits (310), Expect = 7e-27
 Identities = 57/143 (39%), Positives = 101/143 (70%), Gaps = 5/143 (3%)
 Frame = +3

Query: 132 RKLLMQRKAEQVAAEASASLLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKS-----S 296
           +++++++KA+++  ++   LLFHCSG+  +QWR+LKN L   +G++LFQPN+K      +
Sbjct: 4   KQIVIRKKAQEIEKKSPYILLFHCSGLTSRQWRQLKNLLCAFRGRTLFQPNYKGKLPHKN 63

Query: 297 HFSPFAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDV 476
               F E++A S GP C+LYL + A  +  S+LLP  S + +++LL+GQ QS+++NH+D+
Sbjct: 64  KQGGFIEQLAYSAGPTCILYLTKEAPDNTWSQLLPSASYNQNLVLLYGQLQSTLVNHMDI 123

Query: 477 KKATSLDLVSVYRRSVFSTLFNP 545
           KKA +L++ SV+++ +F  +F P
Sbjct: 124 KKAANLEITSVFQQ-LFELIFYP 145


>tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b
           OS=Nicotiana tabacum GN=orf159b PE=4 SV=1
          Length = 159

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
 Frame = +3

Query: 132 RKLLMQRKAEQVAAEASAS---LLFHCSGVNCKQWRELKNSLATIQGKSLFQPN-FKSSH 299
           R LL ++   +V+ E  +    + FH SG    QWR+LKN      G++LF+P+ F +  
Sbjct: 5   RSLLQKKSLLRVSGEERSPGILISFHSSGSTSNQWRKLKNPW--FPGRTLFRPSCFGTGK 62

Query: 300 FSPFAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVK 479
              F  ++A S GP C+ YL E AS D+L  L    SM   +LLL+GQ +S++++H+DV+
Sbjct: 63  KKRFFAQLAHSAGPTCISYLAEEAS-DRLEFLPSWDSMDQDLLLLYGQYRSTLVDHMDVE 121

Query: 480 KATSLD 497
           KA++LD
Sbjct: 122 KASNLD 127


>tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf159
           PE=4 SV=1
          Length = 158

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
 Frame = +3

Query: 132 RKLLMQRKAEQVAAEASAS---LLFHCSGVNCKQWRELKNSLATIQGKSLFQPNF-KSSH 299
           R LL +    +V+ E  +    + FH SG    QWR+LKN      G++ F+P+   +  
Sbjct: 5   RSLLQRESLLRVSGEEGSPEILISFHSSGSTSNQWRKLKNPW--FPGRTPFRPSCCGTGK 62

Query: 300 FSPFAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVK 479
              F  ++A S GP C+ YL E AS D+L  L    SM   +L L+GQ +S++++H+DV+
Sbjct: 63  KKRFFAQLAHSAGPTCISYLAEEAS-DRLEFLRSWDSMDQDLLSLYGQYRSTLVDHMDVE 121

Query: 480 KATSLD 497
           KA   D
Sbjct: 122 KAFHFD 127


>tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine
           kinase OS=Burkholderia phymatum (strain DSM 17167 /
           STM815) GN=Bphy_5115 PE=4 SV=1
          Length = 609

 Score = 37.4 bits (85), Expect = 0.89
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
 Frame = +1

Query: 421 ACFSFLGSSNRASSTMWM*KRRPRWTLSQST---------AVVYSPPSSTLWFSFRA 564
           ACF F G +N AS  +WM  RR    +S  T         A++Y+ P   +WF+F++
Sbjct: 52  ACFIFYGFANCASLALWMCNRRWPEAVSPRTWINLHAARGALLYAAPGLAIWFAFQS 108


>tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 PE=4
           SV=1
          Length = 132

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = -2

Query: 637 GAVLLTSSFAEAALPDSLILFILSRPEKKTIGLKRVENTLRR*TETRSNEVAFFTSTWLR 458
           G  +L+S  A AA+  SLIL I++R     +  ++VEN   R    R N +A  TS W +
Sbjct: 5   GPAILSSGIAGAAV--SLILAIMNRRHTNALA-RQVENAAEREEVERDNLLAEATSKWSK 61

Query: 457 MLD 449
           +LD
Sbjct: 62  LLD 64


>tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine
           kinase OS=Burkholderia phytofirmans (strain DSM 17436 /
           PsJN) GN=Bphyt_4849 PE=4 SV=1
          Length = 655

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +1

Query: 421 ACFSFLGSSNRASSTMWM*KRR------PR-WTLSQST--AVVYSPPSSTLWFSFRA 564
           ACF F  ++N AS  +W+  RR      PR W +  +    ++YS P   +WF+F++
Sbjct: 52  ACFGFYAAANCASLALWLVNRRYPQLVSPRGWIILHAVRGMLLYSGPGIAVWFAFQS 108


>tr|Q8FUC6|Q8FUC6_COREF Putative uncharacterized protein
           OS=Corynebacterium efficiens GN=CE0094 PE=4 SV=1
          Length = 549

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +3

Query: 153 KAEQVAAEASASLLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKSSHFSPFAEKIASS 332
           +A    A     +L H SG N   W E+   L   QG ++F P+F +    P AE  A  
Sbjct: 311 RARPTQARPWPVVLIHGSGANKGSWEEMGRELRR-QGWAVFAPDFGTRATEPIAESAAQI 369

Query: 333 PGPLCLLYLGEGASQ 377
              +  + L  GA+Q
Sbjct: 370 GAYIDAVLLVTGAAQ 384


>tr|Q8M1E4|Q8M1E4_CHAGL Putative diaminopimelate decarboxylase
           OS=Chaetosphaeridium globosum GN=orf126 PE=4 SV=1
          Length = 126

 Score = 33.9 bits (76), Expect = 9.8
 Identities = 30/132 (22%), Positives = 55/132 (41%)
 Frame = +3

Query: 132 RKLLMQRKAEQVAAEASASLLFHCSGVNCKQWRELKNSLATIQGKSLFQPNFKSSHFSPF 311
           RK   ++K +Q+        +FHC   N  + R +KN L   + K LF+ +         
Sbjct: 4   RKYFFEKKYQQLLINNPYVFVFHCK--NKLKVRNIKNRLLDHKIKMLFKQSS-------- 53

Query: 312 AEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKATS 491
                      C+ Y G  AS      ++        ++LL  Q   + +NHVDV++ T 
Sbjct: 54  -----------CIFY-GNNAS------IMKEVKAPKELVLLHAQYDFTKVNHVDVERTTE 95

Query: 492 LDLVSVYRRSVF 527
           ++   +Y+  ++
Sbjct: 96  VNKNVLYQNILY 107