DK949052 |
Clone id |
TST38A01NGRL0004_P09 |
Library |
TST38 |
Length |
649 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_P09. 5' end sequence. |
Accession |
DK949052 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL344Contig1 |
Sequence |
TGCCTTTAAGTCGTTTGATCCACAGGCAGTAGTACATTATGGAGAGCAGAGGTCAGCCCC TTATTCTATGATGGATCGCAGTCGTGCTGTATTTACACAACATAACAACGTGATCGGGAC CATGAATGTGCTCTTTGCTATTAAGGAATTTGCTAATGACTGCCATCTCGTCAAGCTTGG TACTATGGGGGAATATGGTACTCCAAACATTGACATCGAGGAGGGTTTTATCACAATAAC GCATAATGGTCGAACTGATACCTTGCCATACCCCAAGCAAGCAAGTTCATTTTATCATCT TAGCAAAGTGCATGACTCGCACAACATTGCATTTGCTTGCAAGGCCTGGAAAATTAGAGC AACAGACTTGAATCAGGGTGTAGTTTACGGAGTTTCTACCCCAGAGACGAGCTTGGATGT TGAGCTGATCAATAGGCTGGATTATGATGGTGTCTTTGGGACGGCTTTGAATCGCTTTTG TGTCCAAGCGGCAGTGGGGCATCCTCTTACAGTTTACGGCAAAGGAGGACAGACAAGAGG ATACCTTGATATTAGGGACACTGTTCAGTGTATTGAACTGGCAATTGCAAACCCAGCTAA GCCTGGAGAGTTCCGTGTGTTTAATCAGTTTACAGAGCAGTTTTCTGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48917 |
Definition |
sp|O48917|SQD1_ARATH UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana |
Align length |
216 |
Score (bit) |
402.0 |
E-value |
1.0e-112 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949052|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_P09, 5' (649 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48917|SQD1_ARATH UDP-sulfoquinovose synthase, chloroplastic ... 402 e-112 sp|Q84KI6|SQD1_SPIOL UDP-sulfoquinovose synthase, chloroplastic ... 398 e-110 sp|P44914|RFFG_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus... 44 6e-04 sp|P26391|RFBB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella ... 43 0.001 sp|Q9S642|RFBB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria m... 42 0.003 sp|P55294|RFBB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria m... 40 0.011 sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus... 39 0.018 sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pong... 39 0.018 sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus ... 39 0.018 sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo... 39 0.018 sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typh... 37 0.069 sp|P37761|RFBB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria g... 37 0.069 sp|P0C7J0|RFBB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas... 37 0.090 sp|B0RVL0|RFBB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas... 37 0.090 sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Dani... 36 0.15 sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xeno... 35 0.26 sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methano... 34 0.58 sp|Q7NS40|AROE_CHRVO Shikimate dehydrogenase OS=Chromobacterium ... 32 2.2 sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase ytcB ... 31 4.9 sp|Q7M722|TR114_MOUSE Taste receptor type 2 member 114 OS=Mus mu... 31 6.4 sp|Q1DSY1|SFH5_COCIM Phosphatidylinositol transfer protein SFH5 ... 31 6.4 sp|Q8A491|RL6_BACTN 50S ribosomal protein L6 OS=Bacteroides thet... 30 8.4 sp|P53706|HST6_CANAL ATP-dependent permease HST6 OS=Candida albi... 30 8.4 sp|Q499U1|S2538_RAT Solute carrier family 25 member 38 OS=Rattus... 27 9.9
>sp|O48917|SQD1_ARATH UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1 Length = 477
Score = 402 bits (1034), Expect = e-112 Identities = 191/216 (88%), Positives = 203/216 (93%) Frame = +2
Query: 2 AFKSFDPQAVVHYGEQRSAPYSMMDRSRAVFTQHNNVIGTMNVLFAIKEFANDCHLVKLG 181 +FKSF+P +VVH+GEQRSAPYSM+DRSRAV+TQHNNVIGT+NVLFAIKEF +CHLVKLG Sbjct: 168 SFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG 227
Query: 182 TMGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFACKAWKIRA 361 TMGEYGTPNIDIEEG+ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAF CKAW IRA Sbjct: 228 TMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRA 287
Query: 362 TDLNQGVVYGVSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRG 541 TDLNQGVVYGV T ET + EL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRG Sbjct: 288 TDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRG 347
Query: 542 YLDIRDTVQCIELAIANPAKPGEFRVFNQFTEQFSV 649 YLDIRDTVQC+E+AIANPAK GEFRVFNQFTEQFSV Sbjct: 348 YLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 383
>sp|Q84KI6|SQD1_SPIOL UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1 Length = 482
Score = 398 bits (1022), Expect = e-110 Identities = 190/215 (88%), Positives = 201/215 (93%) Frame = +2
Query: 5 FKSFDPQAVVHYGEQRSAPYSMMDRSRAVFTQHNNVIGTMNVLFAIKEFANDCHLVKLGT 184 FKSF+P VVH+GEQRSAPYSM+DRSRAV+TQ NNVIGT+NVLFAIKEF+ +CHLVKLGT Sbjct: 174 FKSFEPDTVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTINVLFAIKEFSEECHLVKLGT 233
Query: 185 MGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFACKAWKIRAT 364 MGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAF CKAW IRAT Sbjct: 234 MGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRAT 293
Query: 365 DLNQGVVYGVSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY 544 DLNQGVVYGV T ET++ EL NR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGY Sbjct: 294 DLNQGVVYGVMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY 353
Query: 545 LDIRDTVQCIELAIANPAKPGEFRVFNQFTEQFSV 649 LDIRDTVQC+ELAIANPAK GEFRVFNQFTEQ+SV Sbjct: 354 LDIRDTVQCVELAIANPAKLGEFRVFNQFTEQYSV 388
>sp|P44914|RFFG_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1 Length = 338
Score = 44.3 bits (103), Expect = 6e-04 Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 3/197 (1%) Frame = +2
Query: 5 FKSFDPQAVVHYGEQRSAPYSMMDRS---RAVFTQHNNVIGTMNVLFAIKEFANDCHLVK 175 F+ + P AV+H + S +DRS A F Q N++GT +L K + + K Sbjct: 70 FEKYQPDAVMHLAAE-----SHVDRSISGAADFVQ-TNIVGTYTLLEVAKNYWHTLDEAK 123
Query: 176 LGTMGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFACKAWKI 355 T + + D G ++++ T+ PY SS Y SK +H + + + + Sbjct: 124 KTTF-RFHHISTDEVYGDLSLSEPAFTEQSPY--HPSSPYSASKAASNHLVQAWHRTYGL 180
Query: 356 RATDLNQGVVYGVSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQT 535 N YG L +I+ A +G PL +YG G Q Sbjct: 181 PVIITNSSNNYGAYQHAEKLIPLMISN-----------------AVMGKPLPIYGDGQQI 223
Query: 536 RGYLDIRDTVQCIELAI 586 R +L + D VQ L + Sbjct: 224 RDWLFVEDHVQASYLVL 240
>sp|P26391|RFBB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1 Length = 361
Score = 43.1 bits (100), Expect = 0.001 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 10/212 (4%) Frame = +2
Query: 5 FKSFDPQAVVHYGEQRSAPYSMMDRSRAVFTQHNNVIGTMNVLFAIKEF--------AND 160 F+ + P AV+H + S+ + + T N++GT +L +++ N+ Sbjct: 69 FEQYQPDAVMHLAAESHVDRSITGPAAFIET---NIVGTYALLEVARKYWSALGEDKKNN 125
Query: 161 CHLVKLGTMGEYGT-PNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFA 337 + T YG P+ D E +T+ T+T Y SS Y SK H + Sbjct: 126 FRFHHISTDEVYGDLPHPDEVENSVTLPLF--TETTAYAP--SSPYSASKASSDHLVRAW 181
Query: 338 CKAWKIRATDLNQGVVYG-VSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTV 514 + + + N YG PE + + ++N L+ G PL + Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALE------------------GKPLPI 223
Query: 515 YGKGGQTRGYLDIRDTVQCIELAIANPAKPGE 610 YGKG Q R +L + D + + + + K GE Sbjct: 224 YGKGDQIRDWLYVEDHARALHMVVTE-GKAGE 254
>sp|Q9S642|RFBB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1 Length = 341
Score = 42.0 bits (97), Expect = 0.003 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 1/191 (0%) Frame = +2
Query: 5 FKSFDPQAVVHYGEQRSAPYSMMDRSRAVFTQHNNVIGTMNVLFAIKEFANDCHLVKLGT 184 F P AV+H + S+ + T N++GT N+L A + + K Sbjct: 70 FAQHRPDAVMHLAAESHVDRSIGSAGEFIQT---NIVGTFNLLEAARAYRQQMPSEKHEA 126
Query: 185 MGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFACKAWKIRAT 364 + + D G ++ T + T+T PY SS Y SK H + + + + Sbjct: 127 F-RFHHISTDEVYGDLSGTDDLFTETAPYAP--SSPYSASKASSDHLVRAWLRTYGLPTI 183
Query: 365 DLNQGVVYG-VSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRG 541 N YG PE + + ++N LD G PL VYG G Q R Sbjct: 184 VTNCSNNYGPYHFPEKLIPLMILNALD------------------GKPLPVYGDGMQIRD 225
Query: 542 YLDIRDTVQCI 574 +L + D + + Sbjct: 226 WLFVEDHARAL 236
>sp|P55294|RFBB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2 Length = 355
Score = 40.0 bits (92), Expect = 0.011 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 1/191 (0%) Frame = +2
Query: 5 FKSFDPQAVVHYGEQRSAPYSMMDRSRAVFTQHNNVIGTMNVLFAIKEFANDCHLVKLGT 184 F + P AV+H + S+ + T N++GT N+L A + + + Sbjct: 70 FAQYRPDAVMHLAAESHVDRSIGSAGEFIQT---NIVGTFNLLEAARAYWQQMPSEQHEA 126
Query: 185 MGEYGTPNIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFACKAWKIRAT 364 + + D G + T + T+T PY SS Y SK H + + + + Sbjct: 127 F-RFHHISTDEVYGDLGGTDDLFTETAPYAP--SSPYSASKASSDHLVRAWLRTYGLPTI 183
Query: 365 DLNQGVVYG-VSTPETSLDVELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRG 541 N YG PE + + ++N LD G PL VYG G Q R Sbjct: 184 VTNCSNNYGPYHFPEKLIPLMILNALD------------------GKPLPVYGDGMQIRD 225
Query: 542 YLDIRDTVQCI 574 +L + D + + Sbjct: 226 WLFVEDHARAL 236
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 Length = 420
Score = 39.3 bits (90), Expect = 0.018 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2
Query: 458 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CIELAIANPAKP 604 G ++ F +QA G PLTVYG G QTR + + D V + L +N + P Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 320
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 Length = 420
Score = 39.3 bits (90), Expect = 0.018 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2
Query: 458 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CIELAIANPAKP 604 G ++ F +QA G PLTVYG G QTR + + D V + L +N + P Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 320
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 Length = 420
Score = 39.3 bits (90), Expect = 0.018 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2
Query: 458 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CIELAIANPAKP 604 G ++ F +QA G PLTVYG G QTR + + D V + L +N + P Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 320
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 Length = 420
Score = 39.3 bits (90), Expect = 0.018 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2
Query: 458 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CIELAIANPAKP 604 G ++ F +QA G PLTVYG G QTR + + D V + L +N + P Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 320
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q60E66 |
Definition |
tr|Q60E66|Q60E66_ORYSJ Os05g0387200 protein OS=Oryza sativa subsp. japonica |
Align length |
216 |
Score (bit) |
410.0 |
E-value |
1.0e-113 |
Report |
 |