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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949107
Clone id TST38A01NGRL0005_B17
Library
Length 709
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_B17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCCATCTGTGAGCTTTGTGCGTCGCTAGCGCCTGTTTCCTCTCCAGTCCGCAAAACCTTC
ATGGCTCCCAAACGCAGAGGAAGGCCCCGCAAGACCGATAAACCTGCTGATGATAATGTG
GAGAAGCAGGAGACTTCTGTGTCTGCAGAGGCCGCCGAAGCTGCCGAAGAAGTGGTAGAA
GAAGAAGAGAAAGCGGAAACGGAGCCCAGCCCGAAGAAGAGTAAAGTGGAAGAGAAGAAG
AAGAGGGGTCGCAAGCCAAAAGCTACCTCGAAGAAGGTTGCTGCTAAGAAGTCTGCGGAT
GATGATGATGATGCAAAGGACGCCAGTGAGGACGAAGAGGCCGAGGAGGGAGTGGAGGAG
GAAGTTCCAGCCGATGCTATGTCTCAGAAAGTGGTTATCATTGAGGCCAGCAAGGAGTGC
AATTGTTTCAAGACTCGGGCTGCCAAAGTTCATGCAGGTCTTACTAAAGCTATTCCTGGT
ATTGAAGTGCAAATCAATCCAGACAAGCCTAGAAAAGGTTGCTTTGAGGTGCGTGGCAAG
GATGGCAAGATTTACATGTCTCTGCTTGGATTGCCAAGGCCTTTTACAAAGCTGAAGAAT
GTGGACATGGACAAGGCTGTTGAGGAAATTGTTGCAAAAGTGAAGTGAAGAGCCCCTGCT
GTGGTTGAAATGACTGCCATTTTGCTGCTTGTTTGGATTTTTCAACCCA
■■Homology search results ■■ -
sp_hit_id Q4R5Y4
Definition sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis
Align length 87
Score (bit) 41.2
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949107|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_B17, 5'
         (709 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=S...    41   0.006
sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=...    41   0.006
sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=...    40   0.012
sp|Q8X659|MDTQ_ECO57 Multidrug resistance outer membrane protein...    32   4.4  
sp|Q2H6R9|XPOT_CHAGB Exportin-T OS=Chaetomium globosum GN=LOS1 P...    30   9.9  
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    30   9.9  
sp|Q8FFV6|MDTQ_ECOL6 Multidrug resistance outer membrane protein...    30   9.9  

>sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=SELH
           PE=2 SV=2
          Length = 122

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 379 MSQKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVR--GKDGKI 552
           M +  V+IE       +   AA +   L    P + V++NP KPR+G FEV     DG  
Sbjct: 31  MEETTVVIEHCTSURVYGXNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90

Query: 553 YMSLLGLPR-PFTKLKNVDMDKAVEEI 630
                G+ + P  KLK  +  + VEE+
Sbjct: 91  AELWTGIKKGPPRKLKFPEPQEVVEEL 117


>sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=1
           SV=2
          Length = 122

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 379 MSQKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVR--GKDGKI 552
           M +  V+IE       +   AA +   L    P + V++NP KPR+G FEV     DG  
Sbjct: 31  MEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90

Query: 553 YMSLLGLPR-PFTKLKNVDMDKAVEEI 630
                G+ + P  KLK  +  + VEE+
Sbjct: 91  AELWTGIKKGPPRKLKFPEPQEVVEEL 117


>sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=2
           SV=2
          Length = 116

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +1

Query: 394 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEV---RGKDGKIYMSL 564
           V+IE       +   AA +   L    P + VQ+NP KPR+G FEV   R  + ++ +  
Sbjct: 30  VVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEVTLLRSDNSRVELWT 89

Query: 565 LGLPRPFTKLKNVDMDKAVEEI 630
                P  KLK  +  + VEE+
Sbjct: 90  GIKKGPPRKLKFPEPQEVVEEL 111


>sp|Q8X659|MDTQ_ECO57 Multidrug resistance outer membrane protein
           mdtQ OS=Escherichia coli O157:H7 GN=mdtQ PE=3 SV=3
          Length = 478

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 457 GLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGLPRPFTK---LKNVDMDKAVEE 627
           G+T ++ G+E  IN  K R+   +V GK   I   L+ L    TK   LK V + K   +
Sbjct: 226 GITSSVEGVETDINASKTRQQLNDVAGKMKIIEARLIALTNHQTKSLTLKPVALPKVASQ 285

Query: 628 I 630
           +
Sbjct: 286 L 286


>sp|Q2H6R9|XPOT_CHAGB Exportin-T OS=Chaetomium globosum GN=LOS1 PE=3
           SV=1
          Length = 1019

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -2

Query: 633 NNFLNSLVHVHILQLCKRPWQ---SKQRHVNLAILATHLKATFSRLVWIDLH 487
           NN L  L+    +Q   + WQ   ++  H N  ++ T LK     + WID+H
Sbjct: 175 NNDLKDLIRERDMQKIAQSWQDLLARYSHQNDGVVETTLKTIGKWVSWIDIH 226


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  SLAPVSSPVRKTFMAPKRRGRPRK-TDKPADDNVE 123
           +LAP S    +   AP+RRGRPRK   KP D+  E
Sbjct: 85  TLAPPSPSPLRLNEAPRRRGRPRKYPPKPIDEGSE 119


>sp|Q8FFV6|MDTQ_ECOL6 Multidrug resistance outer membrane protein
           mdtQ OS=Escherichia coli O6 GN=mdtQ PE=3 SV=2
          Length = 478

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 457 GLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGLPRPFT---KLKNVDMDKAVEE 627
           G+T ++ G+E  IN  K R+   +V GK   I   L  L    T   KLK V + K   +
Sbjct: 226 GITSSVEGVETDINASKTRQQLNDVAGKMKIIEARLNALTNHQTKSLKLKTVALPKVASQ 285

Query: 628 I 630
           +
Sbjct: 286 L 286
tr_hit_id A9NQ13
Definition tr|A9NQ13|A9NQ13_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 79
Score (bit) 97.8
E-value 6.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949107|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_B17, 5'
         (709 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQ13|A9NQ13_PICSI Putative uncharacterized protein OS=Picea...    98   6e-19
tr|Q53NN8|Q53NN8_ORYSJ Os11g0704000 protein OS=Oryza sativa subs...    97   1e-18
tr|A8JGP7|A8JGP7_CHLRE Selenoprotein H OS=Chlamydomonas reinhard...    96   2e-18
tr|A5BYV8|A5BYV8_VITVI Putative uncharacterized protein OS=Vitis...    96   2e-18
tr|A2ZH16|A2ZH16_ORYSI Putative uncharacterized protein OS=Oryza...    96   2e-18
tr|A7P4Z5|A7P4Z5_VITVI Chromosome chr4 scaffold_6, whole genome ...    94   7e-18
tr|Q9ZQ24|Q9ZQ24_ARATH Expressed protein (Putative uncharacteriz...    92   3e-17
tr|Q8W465|Q8W465_ARATH Putative uncharacterized protein At4g3136...    92   3e-17
tr|B6TEF3|B6TEF3_MAIZE SelT/selW/selH selenoprotein domain conta...    91   7e-17
tr|B6TCP6|B6TCP6_MAIZE SelT/selW/selH selenoprotein domain conta...    91   7e-17
tr|A9TLP6|A9TLP6_PHYPA Predicted protein (Fragment) OS=Physcomit...    88   6e-16
tr|A3B1W6|A3B1W6_ORYSJ Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A2Y2E9|A2Y2E9_ORYSI Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|Q0DJN2|Q0DJN2_ORYSJ Os05g0250500 protein OS=Oryza sativa subs...    71   6e-11
tr|A9V7D7|A9V7D7_MONBE Predicted protein OS=Monosiga brevicollis...    65   6e-09
tr|O49585|O49585_ARATH Putative uncharacterized protein AT4g3136...    56   3e-06
tr|B7FZD4|B7FZD4_PHATR Predicted protein OS=Phaeodactylum tricor...    43   0.023
tr|A9VDK5|A9VDK5_MONBE Predicted protein OS=Monosiga brevicollis...    36   2.2  
tr|B3RYG8|B3RYG8_TRIAD Putative uncharacterized protein OS=Trich...    36   2.8  
tr|Q01E46|Q01E46_OSTTA Chromosome 02 contig 1, DNA sequence OS=O...    35   6.3  
tr|B1XLM5|B1XLM5_SYNP2 Flavoprotein OS=Synechococcus sp. (strain...    34   8.2  

>tr|A9NQ13|A9NQ13_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 172

 Score = 97.8 bits (242), Expect = 6e-19
 Identities = 43/79 (54%), Positives = 58/79 (73%)
 Frame = +1

Query: 394 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 573
           +I+E  K+C CFK RA+KV   L  AI  +EV+INP+KPR+GCFE+R  +G I++SL  +
Sbjct: 89  IIVEHCKQCQCFKVRASKVEKELKGAIHDVEVKINPEKPRRGCFEIRDGEGNIFLSLQNM 148

Query: 574 PRPFTKLKNVDMDKAVEEI 630
           PRPFTKLK  D+D  + EI
Sbjct: 149 PRPFTKLKQWDLDGTISEI 167


>tr|Q53NN8|Q53NN8_ORYSJ Os11g0704000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0704000 PE=4 SV=1
          Length = 164

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 39/81 (48%), Positives = 62/81 (76%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K +++EA  +C  FK RAAKV   L  ++PG+ V INP+KPR+GC E+R + G++++SLL
Sbjct: 79  KRIVVEACTQCRQFKIRAAKVKEDLESSVPGVSVVINPEKPRRGCLEIREEGGEVFISLL 138

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            +PRPFT++K +DMD+ +++I
Sbjct: 139 NMPRPFTEMKKLDMDEVIKDI 159


>tr|A8JGP7|A8JGP7_CHLRE Selenoprotein H OS=Chlamydomonas reinhardtii
           GN=SelH PE=4 SV=2
          Length = 128

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 56/79 (70%)
 Frame = +1

Query: 394 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 573
           ++IEA K    FKTRA K+   + +  PG  V +NPDKPRKGCFEVRG  GK ++SLL +
Sbjct: 44  IVIEACKSUGAFKTRATKLEKLIKEGAPGTSVSVNPDKPRKGCFEVRGPGGKTFVSLLDM 103

Query: 574 PRPFTKLKNVDMDKAVEEI 630
           PRPFTKLK +D++   EE+
Sbjct: 104 PRPFTKLKALDVEALAEEV 122


>tr|A5BYV8|A5BYV8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008125 PE=4 SV=1
          Length = 154

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 42/81 (51%), Positives = 59/81 (72%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K ++IE  K+CN FKTRA +V  GL K + GI V +NP+KPR+GCFE+R + G+ Y+SLL
Sbjct: 69  KTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKYISLL 128

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            + RPF  +K +DMDK + +I
Sbjct: 129 DMKRPFAPMKALDMDKVISDI 149


>tr|A2ZH16|A2ZH16_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37072 PE=4 SV=1
          Length = 164

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 39/81 (48%), Positives = 61/81 (75%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K +++EA  +C  FK RAAKV   L  ++PG+ V INP+KPR+GC E+R + G++++SLL
Sbjct: 79  KRIVVEACTQCRQFKIRAAKVKEDLESSVPGVSVVINPEKPRRGCLEIREEGGEVFISLL 138

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            +PRPFT +K +DMD+ +++I
Sbjct: 139 NMPRPFTAMKKLDMDEVIKDI 159


>tr|A7P4Z5|A7P4Z5_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032342001
           PE=4 SV=1
          Length = 154

 Score = 94.4 bits (233), Expect = 7e-18
 Identities = 41/81 (50%), Positives = 59/81 (72%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K ++IE  K+CN FKTRA +V  GL K + GI V +NP+KPR+GCFE+R + G+ ++SLL
Sbjct: 69  KTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKFISLL 128

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            + RPF  +K +DMDK + +I
Sbjct: 129 DMKRPFAPMKALDMDKVISDI 149


>tr|Q9ZQ24|Q9ZQ24_ARATH Expressed protein (Putative uncharacterized
           protein) (Putative uncharacterized protein
           At2g24440/T28I24.17) OS=Arabidopsis thaliana
           GN=At2g24440/T28I24.17 PE=2 SV=1
          Length = 183

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 39/82 (47%), Positives = 61/82 (74%)
 Frame = +1

Query: 385 QKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSL 564
           +K ++IE  K+C  FK RA +V  GL +A+PGI V +NPDKPR+GCFE+R + G+ ++SL
Sbjct: 97  KKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGGETFISL 156

Query: 565 LGLPRPFTKLKNVDMDKAVEEI 630
           L + RPFT +K ++M++ + +I
Sbjct: 157 LAMKRPFTPMKELNMEEVIADI 178


>tr|Q8W465|Q8W465_ARATH Putative uncharacterized protein At4g31360;
           F8F16.180 (Putative uncharacterized protein At4g31360)
           OS=Arabidopsis thaliana GN=At4g31360/F8F16.180 PE=2 SV=1
          Length = 186

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 38/79 (48%), Positives = 59/79 (74%)
 Frame = +1

Query: 394 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 573
           ++IE  K+CN FKTRA +V   L  A+PG+ V +NP+KPR+GCFE+R + G+ ++SLL +
Sbjct: 103 IVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPEKPRRGCFEIREEGGQTFISLLEM 162

Query: 574 PRPFTKLKNVDMDKAVEEI 630
            RPF  +K +DM++ +E+I
Sbjct: 163 KRPFAPMKALDMEEVIEDI 181


>tr|B6TEF3|B6TEF3_MAIZE SelT/selW/selH selenoprotein domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 209

 Score = 90.9 bits (224), Expect = 7e-17
 Identities = 40/81 (49%), Positives = 57/81 (70%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K VI+EA  +C  FK RA KV   L   + G+ V INP KPR+GC E+R + G++++SLL
Sbjct: 124 KRVIVEACTQCRQFKIRAQKVKEDLESYVSGVSVIINPQKPRRGCLEIREEGGEVFISLL 183

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            +PRPFT +K +DMDK +++I
Sbjct: 184 NMPRPFTPMKKLDMDKVIKDI 204


>tr|B6TCP6|B6TCP6_MAIZE SelT/selW/selH selenoprotein domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 183

 Score = 90.9 bits (224), Expect = 7e-17
 Identities = 40/81 (49%), Positives = 57/81 (70%)
 Frame = +1

Query: 388 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 567
           K VI+EA  +C  FK RA KV   L   + G+ V INP KPR+GC E+R + G++++SLL
Sbjct: 98  KRVIVEACTQCRQFKIRAQKVKEDLESYVSGVSVIINPQKPRRGCLEIREEGGEVFISLL 157

Query: 568 GLPRPFTKLKNVDMDKAVEEI 630
            +PRPFT +K +DMDK +++I
Sbjct: 158 NMPRPFTPMKKLDMDKVIKDI 178