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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949131
Clone id TST38A01NGRL0005_C17
Library
Length 675
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_C17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAGCGGATTGGGCTCTCTCAGCCTCCTAGCTCAACTGGCTTGCAACCTAGGGTTCTGTC
AGCTAGTCTTATCTTCTCTTTCGGGATAGTCGGGCCTGCTGCTCGTTTGTCCTTTGAGTA
CTCAGAGGGTCTTAACCTTATCCGACATAGCAAACACTACCTTTGGAACGTATTTGGCCC
TTCCTCCAATTGCGTAGAACCAAACCCTACAGTGCACTTGCAGAGTATCTGTCGACCCAC
AAAGTCCCCTGACATAAGAAAGCGGTTGTGGAAGGCCAACAAGCCGCCATGGCCTCTGCA
GCTTCCATAGGCCTTACACATACATTTCAAGCCCTCTCTCTTGAAACAGGAAGCAGAAGA
GGGTTGAAGCCTGCATCAGCAAACATGCTAACCCGGCTTTCATCATCTTTCTTGGGGGAC
TCCACACAAACCTTCATGGCTCCTTGCTCTCTGGGACTTGGACAGCCCTCTCGCTCATTC
CATGCAATGTGTGTAAGGATGGATTCTCGCTTGTATGCGAGAGAGGACGAATGGAAGAGA
CCCGCAGTTGCACTTGCAGATTATGCTGTCGCAGAGAGTGACCTTGACTTTGCTGGATAT
TCTAAAAGGGGAGAAAGAAGTGGTATGGGGTGGTGGGGTTTTTTAGGTCCGGAGAATGGG
TCCACTACTGGCAGT
■■Homology search results ■■ -
sp_hit_id Q8GDY3
Definition sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=Heliobacillus mobilis
Align length 36
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949131|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_C17, 5'
         (675 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=He...    33   1.4  
sp|Q5F6I7|NADA_NEIG1 Quinolinate synthetase A OS=Neisseria gonor...    33   1.8  
sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor R...    32   2.3  
sp|A1KVN9|NADA_NEIMF Quinolinate synthetase A OS=Neisseria menin...    32   4.0  
sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-...    31   5.2  
sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1 OS=B...    31   5.2  
sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1 OS=B...    31   5.2  
sp|Q9K105|NADA_NEIMB Quinolinate synthetase A OS=Neisseria menin...    31   5.3  
sp|Q9JSX6|NADA_NEIMA Quinolinate synthetase A OS=Neisseria menin...    31   5.3  
sp|A9M2J9|NADA_NEIM0 Quinolinate synthetase A OS=Neisseria menin...    31   5.3  
sp|P14403|POLG_JAEVN Genome polyprotein (Fragment) OS=Japanese e...    30   9.0  
sp|P32886|POLG_JAEVJ Genome polyprotein OS=Japanese encephalitis...    30   9.0  
sp|P19110|POLG_JAEV5 Genome polyprotein OS=Japanese encephalitis...    30   9.0  
sp|P27395|POLG_JAEV1 Genome polyprotein OS=Japanese encephalitis...    30   9.0  

>sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase
           OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
          Length = 260

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 169 RIWPFLQLRRTKPYSALAEYLSTHKVP*HKKAVVEG 276
           R+WPF Q + +    AL+E +  H++P H   +++G
Sbjct: 4   RLWPFGQTKTSADEQALSEQIDPHRIPKHIAIIMDG 39


>sp|Q5F6I7|NADA_NEIG1 Quinolinate synthetase A OS=Neisseria
           gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nadA PE=3
           SV=1
          Length = 370

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
 Frame = +1

Query: 328 QALSLETGSRRG--LKPA------SANMLTRLSSSFLGDSTQTFM-----------APCS 450
           Q L+LETG   G  L+ A       A  L      F+G+S +              A CS
Sbjct: 70  QDLALETGGCVGDSLEMARFGAEHEAGTLVVAGVRFMGESAKILCPEKTVLMPDLEAECS 129

Query: 451 LGLGQPSRSFHAMCVRMDSRLYAREDEWKRPAVALADYAVAES-DLDFAGYSK-RGER 618
           L LG P  +F A C +   R  A          A AD+ V  S  L+   Y K RGE+
Sbjct: 130 LDLGCPEEAFSAFCDQHPDRTVAVYANTSAAVKARADWVVTSSVALEIVSYLKSRGEK 187


>sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor
           RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2
          Length = 192

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 92  GPAARLSFEYSEGLNLIRHSKHYLWNVFGPSSNCVEPNPTVHLQSICRPTKSP 250
           G  A+L+F  + G   I+ + H+L N   PS   ++  PT+   S C   + P
Sbjct: 109 GSKAKLNFPENVGTQTIQRNSHFLQNSMQPSLTYIDQCPTLLSYSRCMEQQQP 161


>sp|A1KVN9|NADA_NEIMF Quinolinate synthetase A OS=Neisseria
           meningitidis serogroup C / serotype 2a (strain ATCC
           700532 / FAM18) GN=nadA PE=3 SV=1
          Length = 370

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
 Frame = +1

Query: 328 QALSLETGSRRG--LKPA------SANMLTRLSSSFLGDSTQTFM-----------APCS 450
           Q L+LETG   G  L+ A       A+ L      F+G+S +              A CS
Sbjct: 70  QDLALETGGCVGDSLEMARFGAEHEADTLVVAGVRFMGESAKILCPEKTVLMPDLEAECS 129

Query: 451 LGLGQPSRSFHAMCVRMDSRLYAREDEWKRPAVALADYAVAES-DLDFAGYSK-RGER 618
           L LG P  +F A C +   R             A AD+ V  S  L+   Y K RGE+
Sbjct: 130 LDLGCPEEAFSAFCDQHPDRTVVVYANTSAAVKARADWVVTSSVALEIVSYLKSRGEK 187


>sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-A
           OS=Danio rerio GN=setd1ba PE=1 SV=2
          Length = 1844

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 416 PKKDDESRV-SMFADAGFNPLLLPVSRERA*NVCVRPMEAAEAMAACWPSTTAF 258
           PK ++  R      +  + PL LPV  E A +V   P   AEA+ AC PS   F
Sbjct: 215 PKGENRQRYFQRLINGSYTPLTLPVGGEEACDVS--PRSLAEALMACEPSRRLF 266


>sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1
           OS=Brucella suis GN=BR1785 PE=3 SV=1
          Length = 371

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 31/115 (26%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
 Frame = -2

Query: 488 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 315
           I  NE      P  +G +      P+   D+   V  F DAGF P    +    A     
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 314 R---------PMEAAEAMAACWPSTTAFLCQGTLWVDRYSASAL*GLVLRNWRKG 177
           +         P E A+AM    P  T     G L  D      L G V+  W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1
           OS=Brucella melitensis GN=BMEI0263 PE=3 SV=2
          Length = 371

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 31/115 (26%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
 Frame = -2

Query: 488 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 315
           I  NE      P  +G +      P+   D+   V  F DAGF P    +    A     
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 314 R---------PMEAAEAMAACWPSTTAFLCQGTLWVDRYSASAL*GLVLRNWRKG 177
           +         P E A+AM    P  T     G L  D      L G V+  W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q9K105|NADA_NEIMB Quinolinate synthetase A OS=Neisseria
           meningitidis serogroup B GN=nadA PE=3 SV=1
          Length = 370

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 36/118 (30%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
 Frame = +1

Query: 328 QALSLETGSRRG--LKPA------SANMLTRLSSSFLGDSTQTFM-----------APCS 450
           Q L+LETG   G  L+ A       A  L      F+G+S +              A CS
Sbjct: 70  QDLALETGGCVGDSLEMARFGAEHEAGTLVVAGVRFMGESAKILCPEKTVLMPDLEAECS 129

Query: 451 LGLGQPSRSFHAMCVRMDSRLYAREDEWKRPAVALADYAVAES-DLDFAGYSK-RGER 618
           L LG P  +F A C +   R             A AD+ V  S  L+   Y K RGE+
Sbjct: 130 LDLGCPEEAFSAFCDQHPDRTVVVYANTSAAVKARADWVVTSSVALEIVSYLKSRGEK 187


>sp|Q9JSX6|NADA_NEIMA Quinolinate synthetase A OS=Neisseria
           meningitidis serogroup A GN=nadA PE=3 SV=1
          Length = 370

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 36/118 (30%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
 Frame = +1

Query: 328 QALSLETGSRRG--LKPA------SANMLTRLSSSFLGDSTQTFM-----------APCS 450
           Q L+LETG   G  L+ A       A  L      F+G+S +              A CS
Sbjct: 70  QDLALETGGCVGDSLEMARFGAEHEAGTLVVAGVRFMGESAKILCPEKTVLMPDLEAECS 129

Query: 451 LGLGQPSRSFHAMCVRMDSRLYAREDEWKRPAVALADYAVAES-DLDFAGYSK-RGER 618
           L LG P  +F A C +   R             A AD+ V  S  L+   Y K RGE+
Sbjct: 130 LDLGCPEEAFSAFCDQHPDRTVVVYANTSAAVKARADWVVTSSVALEIVSYLKSRGEK 187


>sp|A9M2J9|NADA_NEIM0 Quinolinate synthetase A OS=Neisseria
           meningitidis serogroup C (strain 053442) GN=nadA PE=3
           SV=1
          Length = 370

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 36/118 (30%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
 Frame = +1

Query: 328 QALSLETGSRRG--LKPA------SANMLTRLSSSFLGDSTQTFM-----------APCS 450
           Q L+LETG   G  L+ A       A  L      F+G+S +              A CS
Sbjct: 70  QDLALETGGCVGDSLEMARFGAEHEAGTLVVAGVRFMGESAKILCPEKTVLMPDLEAECS 129

Query: 451 LGLGQPSRSFHAMCVRMDSRLYAREDEWKRPAVALADYAVAES-DLDFAGYSK-RGER 618
           L LG P  +F A C +   R             A AD+ V  S  L+   Y K RGE+
Sbjct: 130 LDLGCPEEAFSAFCDQHPDRTVVVYANTSAAVKARADWVVTSSVALEIVSYLKSRGEK 187
tr_hit_id B6WWJ3
Definition tr|B6WWJ3|B6WWJ3_9DELT Putative uncharacterized protein OS=Desulfovibrio piger ATCC 29098
Align length 31
Score (bit) 34.7
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949131|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_C17, 5'
         (675 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6WWJ3|B6WWJ3_9DELT Putative uncharacterized protein OS=Desul...    35   5.6  
tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK208...    35   5.7  
tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional regu...    34   7.4  
tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein OS=Photo...    34   7.4  
tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein OS=Trypa...    34   9.7  
tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein OS=Trypa...    34   9.7  

>tr|B6WWJ3|B6WWJ3_9DELT Putative uncharacterized protein
           OS=Desulfovibrio piger ATCC 29098 GN=DESPIG_02461 PE=4
           SV=1
          Length = 580

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 497 GWILACMRERTNGRDPQLHLQIMLSQRVTLT 589
           GW LAC R+ T+   P+LHL +   +++T+T
Sbjct: 112 GWRLACRRQITDAMGPELHLDVPAPEKMTVT 142


>tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK20841
           PE=4 SV=1
          Length = 522

 Score = 34.7 bits (78), Expect = 5.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 307 IGLTHTFQALSLETGSRRGLKPASANMLTRLSSSFLGDSTQTFMAPCSLGLGQPSRSFHA 486
           +G+     ++SL TGS   L+ +S + L+ L+S+ +G +T      CS       R F +
Sbjct: 113 LGIDGRMSSVSLSTGSASALERSSTSSLSNLNSASVGTNTAVLAKECSSQTSNGGRQFLS 172

Query: 487 M 489
           M
Sbjct: 173 M 173


>tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional
           regulator OS=Streptomyces coelicolor GN=SCO4099 PE=4
           SV=1
          Length = 226

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = -2

Query: 356 LLPVSRERA*NVCVRPMEAAEAMAACWPSTTAFLCQGTLWVDRYSASAL*GLVLRNWRKG 177
           L  ++RE   ++ VRP  A   MAA + S  A   Q  LW DRY+   +  LV R   +G
Sbjct: 97  LTALNREIQESLVVRPSFAVALMAASFHSEQAARAQTRLWADRYAQCEI--LVERAVARG 154

Query: 176 QIRSKGS 156
           ++  +G+
Sbjct: 155 ELPVRGA 161


>tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein
           OS=Photobacterium profundum 3TCK GN=P3TCK_09258 PE=4
           SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 298 AASIGLTHTFQA--LSLETGSRRGLKPASANMLTRLSSSFLGDSTQTFMAPCSLGLGQPS 471
           A+  GL  TF A   ++    RRG  P   ++ T +    LG +T+ F    +LGL +PS
Sbjct: 57  ASEGGLDSTFWAGPENITAAMRRGDVPIEGSVRTEVRRLRLGFTTEDFGYSIALGLPEPS 116

Query: 472 RSFHAMCVRMDSRLYAREDEWK----RPAVALAD 561
            S+ ++   +      RE  W     RPA AL D
Sbjct: 117 NSYFSLDPEI-----KRECIWSGPFYRPASALVD 145


>tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.7.2050 PE=4 SV=1
          Length = 807

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = -1

Query: 567 SIICKCNCGSLPFVLSRIQARIHPYTHCME-*ARGLSKSQR---ARSHEGLCGVPQER** 400
           S++  C CGS+P V+ R +    P   C     R L   +    A+ HEG C   Q++  
Sbjct: 256 SVVATCPCGSVPLVVVRTRCS-DPVPVCGNVCGRWLDCGEHKCDAKCHEGGCEPCQQQ-- 312

Query: 399 KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 289
                 C C    ++  C  R   +C  +CKA  SC  H
Sbjct: 313 --VAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKH 349


>tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510165.30 PE=4 SV=1
          Length = 817

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
 Frame = -1

Query: 573 CD---SIICKCNCGSLPFVLSRIQARIHPYTHCME*ARGLSKSQR----ARSHEGLCGVP 415
           CD   SII  C CG +P  ++R      P   C      +   QR    A  HEG C   
Sbjct: 252 CDRDPSIIVTCPCGLVPLTVTRKHCS-DPIPTCGNVCGRVLDCQRHTCQALCHEGECNPC 310

Query: 414 QER**KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 289
           ++R        C CR       C K++  +C  +CK   SC  H
Sbjct: 311 EKRVLTK----CVCRATQQLVPCAKQDEFRCNIVCKTKLSCGKH 350