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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949152
Clone id TST38A01NGRL0005_D15
Library
Length 631
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_D15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAAAAAGTTGGCAAACGATGATAACATCGGGCCAGACGTGAAAGACGGAGCACCTGATA
ACGCGTATTCACAAACCAGGAACTGCGGGATTACCCTCAGTATTCGGGGTAGCGGAGGGA
TCACACTATACGAGCCTCTCCTGCTTCTCCCGGAGGTCCGTAGAAGCAGCAATCGACGAA
AATTACGTATGCGCGGGGGCAGGGTTCTAAATCTCCTCAATCCGAGGTTTTTTATCCGGG
AAAGAGGTAAAAAAAAAAAATGCCGCACCCAGACATGGAGAGACTGCCGAGGGAAGCAAG
AAAGGTGGATCCACGGTATTTGCCCCAGCTCCCTACTTGGCTATTCCAAGTAGTCTTCAA
TCCCATGTACCGAGACGCCTCGGTCCTCCCTCAACGAACAGGCTCGAAGGGAGATCCTAG
AGTGTACGGGGTTAAGTTAAGCCAAGAGGATTTCTCGACGCCTCTTTTTCCCTCCATTCC
ATCAAATGAAGTCTATTTCTGCGAAGGTATTATCATTGCCCTCGGCAAAGAGATGGAACA
GAGACACTTGGAGAGCGCAGTACGACGGGGAGTTGTATGCTGCGTTCGGGAAGGATGAGT
CGCCTCTAGAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P12173
Definition sp|P12173|YCF68_ORYSJ Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica
Align length 37
Score (bit) 42.7
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949152|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_D15, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12173|YCF68_ORYSJ Uncharacterized protein ycf68 OS=Oryza sat...    43   0.001
sp|P0C305|YCF68_ORYSI Uncharacterized protein ycf68 OS=Oryza sat...    43   0.001
sp|P0C304|YCF68_ORYSA Uncharacterized protein ycf68 OS=Oryza sat...    43   0.001
sp|Q6ENB7|YCF68_ORYNI Uncharacterized protein ycf68 OS=Oryza niv...    43   0.001
sp|O83426|SECF_TREPA Protein-export membrane protein secF OS=Tre...    34   0.49 
sp|Q0ID68|DAPAT_SYNS3 LL-diaminopimelate aminotransferase OS=Syn...    33   1.4  
sp|Q80TR8|VPRBP_MOUSE Protein VPRBP OS=Mus musculus GN=Vprbp PE=...    32   3.2  
sp|A5GW23|DAPAT_SYNR3 LL-diaminopimelate aminotransferase OS=Syn...    31   4.1  
sp|Q2HDJ0|LMBD1_CHAGB Probable lysosomal cobalamin transporter O...    31   5.4  
sp|Q7U4C3|DAPAT_SYNPX LL-diaminopimelate aminotransferase OS=Syn...    30   7.0  
sp|Q641G3|CCAR1_XENLA Cell division cycle and apoptosis regulato...    30   7.0  
sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=R...    30   7.1  
sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora...    30   7.1  
sp|Q86SR1|GLT10_HUMAN Polypeptide N-acetylgalactosaminyltransfer...    30   9.1  
sp|P32594|GAG_MSVMT Gag polyprotein OS=Moloney murine sarcoma vi...    30   9.1  
sp|Q3AMU5|DAPAT_SYNSC LL-diaminopimelate aminotransferase OS=Syn...    30   9.1  
sp|A5GIN1|DAPAT_SYNPW LL-diaminopimelate aminotransferase OS=Syn...    30   9.1  
sp|Q8CH18|CCAR1_MOUSE Cell division cycle and apoptosis regulato...    30   9.1  
sp|Q8IX12|CCAR1_HUMAN Cell division cycle and apoptosis regulato...    30   9.1  
sp|Q46JW9|PCBD_PROMT Divinyl chlorophyll a/b light-harvesting pr...    30   9.2  

>sp|P12173|YCF68_ORYSJ Uncharacterized protein ycf68 OS=Oryza sativa
           subsp. japonica GN=ycf68-1 PE=3 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>sp|P0C305|YCF68_ORYSI Uncharacterized protein ycf68 OS=Oryza sativa
           subsp. indica GN=ycf68-1 PE=3 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>sp|P0C304|YCF68_ORYSA Uncharacterized protein ycf68 OS=Oryza sativa
           GN=ycf68-1 PE=3 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>sp|Q6ENB7|YCF68_ORYNI Uncharacterized protein ycf68 OS=Oryza nivara
           GN=ycf68-1 PE=3 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>sp|O83426|SECF_TREPA Protein-export membrane protein secF
           OS=Treponema pallidum GN=secF PE=3 SV=1
          Length = 420

 Score = 34.3 bits (77), Expect = 0.49
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 29  KTEHLITRIHKPGTAGLPSVFGVAEGSHYTSLSCF 133
           K EHL   +H P T  +   F  AEGS  +S SCF
Sbjct: 107 KVEHLSVTLHAPETVYMRDTFSGAEGSTLSSASCF 141


>sp|Q0ID68|DAPAT_SYNS3 LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain CC9311) GN=dapL PE=3 SV=2
          Length = 408

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 348 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 488
           P+Y D++V+  RTG  GD   YG    + +S ++      PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGESGDDGRYGGLTYLPISADNGFAAQIPSEPVDLIYLC 183


>sp|Q80TR8|VPRBP_MOUSE Protein VPRBP OS=Mus musculus GN=Vprbp PE=2
           SV=4
          Length = 1506

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +2

Query: 68  TAGLPSVFGVAEGSHYTSLSCFSRRSVEAAIDENYVCAGAGF*ISSIRGFLSGKEVKKKN 247
           T G+  + GVAEG  +   +   + +++  I  N VC G    ISSI  F+SG   +K +
Sbjct: 655 TVGISIILGVAEGEFFIHDAEIQKSALQIII--NCVC-GPDNRISSIGKFISGTPRRKLS 711

Query: 248 AAPRHGE 268
             P+  E
Sbjct: 712 QTPKSSE 718


>sp|A5GW23|DAPAT_SYNR3 LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain RCC307) GN=dapL PE=3 SV=1
          Length = 408

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 348 PMYRDASVLPQRTGSKGDPRVYG-----VKLSQEDFSTPLFPSIPSNEVYFC 488
           P+Y D++V+  RTG   +   YG        +  DF+ PL PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGDANEGGQYGGLSYLPITAANDFTAPL-PSTPVDLIYLC 183


>sp|Q2HDJ0|LMBD1_CHAGB Probable lysosomal cobalamin transporter
           OS=Chaetomium globosum GN=CHGG_01714 PE=3 SV=1
          Length = 646

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 266 ETAEGSKKGGSTVFAPAPYLAIPSSLQSHVPRRLGPPSTNRLEGR 400
           E AE  ++GG    APA  LA P ++    PRR  P    R+  R
Sbjct: 551 EEAEVDERGGPAGPAPAAALARPGAISPAAPRRTPPRRARRVMAR 595


>sp|Q7U4C3|DAPAT_SYNPX LL-diaminopimelate aminotransferase
           OS=Synechococcus sp. (strain WH8102) GN=dapL PE=3 SV=1
          Length = 408

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 348 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 488
           P+Y D +V+  RTG  G+   YG    + +S ++      PS P + +Y C
Sbjct: 133 PVYVDTNVMAGRTGEAGEEGRYGGLTYLPISADNGFAAQIPSEPVDLIYLC 183
tr_hit_id Q3HKA5
Definition tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicotiana tabacum
Align length 56
Score (bit) 47.0
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949152|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_D15, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicot...    47   8e-04
tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein OS=Nicot...    47   8e-04
tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein OS=Nicot...    47   8e-04
tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, who...    46   0.001
tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spina...    44   0.005
tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Popul...    44   0.007
tr|Q8S6H7|Q8S6H7_ORYSJ Putative uncharacterized protein OSJNBb00...    43   0.016
tr|Q6Z516|Q6Z516_ORYSJ ORF133; ORF within trnI intron OS=Oryza s...    43   0.016
tr|Q6Z1V9|Q6Z1V9_ORYSJ Chloroplast ORF133; ORF within trnI intro...    43   0.016
tr|Q05QI0|Q05QI0_9SYNE Aspartate aminotransferase OS=Synechococc...    35   3.2  
tr|B8M4Z4|B8M4Z4_9EURO ARID/BRIGHT domain protein (SWI1), putati...    34   5.5  
tr|B2S308|B2S308_TREPS Protein-export membrane protein OS=Trepon...    34   5.6  
tr|Q3BSJ7|Q3BSJ7_XANC5 Cytochrome D ubiquinol oxidase, subunit I...    34   7.3  
tr|B1ZFY8|B1ZFY8_METPB Putative uncharacterized protein OS=Methy...    34   7.3  
tr|B6KMP2|B6KMP2_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.4  
tr|Q3JVZ0|Q3JVZ0_BURP1 Putative regulatory protein, FmdB family ...    33   9.5  
tr|B1HFR9|B1HFR9_BURPS Putative uncharacterized protein OS=Burkh...    33   9.5  
tr|Q584W9|Q584W9_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.5  

>tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein
           OS=Nicotiana tabacum PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 8e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = +2

Query: 422 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 589
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein
           OS=Nicotiana sylvestris PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 8e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = +2

Query: 422 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 589
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein
           OS=Nicotiana tomentosiformis PE=4 SV=1
          Length = 71

 Score = 47.0 bits (110), Expect = 8e-04
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = +2

Query: 422 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 589
           V P G L+A F L     S  L R     R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14  VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001371001 PE=4 SV=1
          Length = 73

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +2

Query: 509 RQRDGTETLGERSTTGSCMLRSGRMSR 589
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spinacia
           oleracea PE=4 SV=1
          Length = 72

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +2

Query: 512 QRDGTETLGERSTTGSCMLRSGRMSR 589
           ++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 41  KKGGTSTLGERSTTESCMLRSGRMNR 66


>tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa GN=Poptr_cp074 PE=4 SV=1
          Length = 71

 Score = 43.9 bits (102), Expect = 0.007
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +2

Query: 509 RQRDGTETLGERSTTGSCMLRSGRMSR 589
           R++ GT TLGERST  SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTPESCMLRSGRMNR 65


>tr|Q8S6H7|Q8S6H7_ORYSJ Putative uncharacterized protein
           OSJNBb0075K12.9 OS=Oryza sativa subsp. japonica
           GN=OSJNBb0075K12.9 PE=4 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.016
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VHPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>tr|Q6Z516|Q6Z516_ORYSJ ORF133; ORF within trnI intron OS=Oryza
           sativa subsp. japonica GN=OSJNBa0036E18.13 PE=4 SV=1
          Length = 133

 Score = 42.7 bits (99), Expect = 0.016
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 74  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 110


>tr|Q6Z1V9|Q6Z1V9_ORYSJ Chloroplast ORF133; ORF within trnI intron
           OS=Oryza sativa subsp. japonica GN=OSJNBa0022A24.30 PE=4
           SV=1
          Length = 134

 Score = 42.7 bits (99), Expect = 0.016
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 13  IGPDVKDGAPDNAYSQTRNCGITLSIRGSGGITLYEP 123
           + P  ++GAP+NA SQT+N  ITLS  G GGI  +EP
Sbjct: 75  VRPQWENGAPNNASSQTKNYEITLSFWGDGGIVPFEP 111


>tr|Q05QI0|Q05QI0_9SYNE Aspartate aminotransferase OS=Synechococcus
           sp. RS9916 GN=RS9916_39581 PE=4 SV=1
          Length = 408

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 348 PMYRDASVLPQRTGSKGDPRVYG----VKLSQEDFSTPLFPSIPSNEVYFC 488
           P+Y D++V+  RTG  GD   YG    + +S E+  T   PS P + +Y C
Sbjct: 133 PVYVDSNVMAGRTGDAGDNGRYGGLTYLPISAENGFTAQIPSEPVDLIYLC 183