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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949157
Clone id TST38A01NGRL0005_D20
Library
Length 646
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_D20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGACGAAGGTCGCCCCTGCTTGCTTGTAGCCAGCATTCTCTGGTGAGGAGGTAGGGTGGG
TCGTTTTGGAAGTTGAACCTCTGAAAGGGAATGGCGACTGAAGTTCAGGAGCCGGCTAAC
GGAAATCTGAAGAAAGAGGAGGCAGAGCCCTTGGGAGAGCTCAGAGGGAAGGAAGACTTG
AAGCAGGCACCTGCGGATCTGTGCCATGCTGGGGATGTGAACGGCTGCGAGCCTGTTGCA
GAAAAGGAGGAGCCACTGAAGAAGGTACCCACTCCCAACAAGCAAAAAGGTATTGTTCTC
GATGGTGTAGATGAAGAGGGTGCCACTGAGCCTCAAGATGGCAATGACTACTCTAGTGAG
GAGGAGGAAGGAGATGGAGAAGGGGAGGAAGATGCCAGGGAGGGAGATAGTGAACCATAT
GAGGAAGAGAATGATGAGGAGTATGCAGATGATGGGGAGGATGATGACGGTGATGATGAT
GAGTCACAACCTCCTCCCAAGCGAAGAAAGTGAAATGCCTTGAAAATGCTAAGGCCACTT
CTTTGGATTTGGACGTGAATTGCAATGCCTACAAACTAATGGCATGGGTTCAATTGTCTA
GTTTCTTTCTTGTAAGTTATGGCCTAGCAAACGTTCGGGGCACCGC
■■Homology search results ■■ -
sp_hit_id O77788
Definition sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus
Align length 74
Score (bit) 33.9
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949157|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_D20, 5'
         (646 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taur...    34   0.75 
sp|A7SGU6|PSMG2_NEMVE Proteasome assembly chaperone 2 OS=Nematos...    33   1.3  
sp|Q6AWG9|Y5098_DROME Uncharacterized protein CG5098 OS=Drosophi...    32   2.2  
sp|P80198|HOG3_HORVU Gamma-hordein-3 OS=Hordeum vulgare PE=1 SV=1      32   3.7  
sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI...    31   4.9  
sp|Q9PU97|PA27_BUNMU Phospholipase A2, beta bungarotoxin A7 chai...    31   6.3  
sp|P08553|NFM_MOUSE Neurofilament medium polypeptide OS=Mus musc...    31   6.4  

>sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus
           GN=NEFM PE=1 SV=3
          Length = 926

 Score = 33.9 bits (76), Expect = 0.75
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +1

Query: 100 EVQEPANGNLKKEEAEPLGELRGKED--LKQA-PADLCHAGDVNGCEPVAEKEEPLKKVP 270
           E +E      K++E E + E+ GKE+  LK++   D+   G+V G E   E++E  +K  
Sbjct: 775 EAKEEEKPQEKEKEKEKVEEVGGKEEGGLKESRKEDIAINGEVEGKE---EEQETKEKGS 831

Query: 271 TPNKQKGIVLDGVD 312
              ++KG+V +G+D
Sbjct: 832 GGEEEKGVVTNGLD 845


>sp|A7SGU6|PSMG2_NEMVE Proteasome assembly chaperone 2
           OS=Nematostella vectensis GN=psmg2 PE=3 SV=1
          Length = 244

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
 Frame = -2

Query: 207 MAQIRRCLL-QVFLPSELS---------QGLCLLFLQISVSRLLNFSRHSLSEVQLPKRP 58
           +A I+RC   QV L S +S         QG  L ++  SVS+ L+ S   LS VQL KRP
Sbjct: 111 LAWIKRCSFKQVVLLSSISATDRVDAQLQGSPLRYMTTSVSQQLSSSFDKLSWVQLEKRP 170

Query: 57  TLP 49
             P
Sbjct: 171 KFP 173


>sp|Q6AWG9|Y5098_DROME Uncharacterized protein CG5098 OS=Drosophila
           melanogaster GN=CG5098 PE=1 SV=1
          Length = 1238

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 334 EAQWHPLHLHHREQYLFACWEWVPSSVAPPFLQQARSRSHPQHGTDPQ 191
           ++Q HP HLH+  Q+  A  +  P  + PP L   +  + PQ  +  Q
Sbjct: 282 QSQSHPQHLHYHNQH--ATSQTAPPPLLPPLLTSGQFHAQPQDASQQQ 327


>sp|P80198|HOG3_HORVU Gamma-hordein-3 OS=Hordeum vulgare PE=1 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 328 QWHPLHLH-HREQYLFACWEWVPSSVAPPFLQQARSRSHPQHGTDPQ 191
           Q++P  L   R Q LF  W+ +P    PPFLQQ   + +PQ    PQ
Sbjct: 7   QFNPSGLELERPQQLFPQWQPLPQQ--PPFLQQEPEQPYPQQQPLPQ 51


>sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI1
           PE=1 SV=2
          Length = 1242

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 331 AQWHPLHLHHREQYLFACWEWVPSSVAPPFLQQ-ARSRSHPQHG 203
           AQ+     HHR   L+ C+  +  +V    LQQ  R+ +H QHG
Sbjct: 371 AQFEMAEEHHRHSQLYFCFRALKDNVTHAHLQQIRRNLAHQQHG 414


>sp|Q9PU97|PA27_BUNMU Phospholipase A2, beta bungarotoxin A7 chain
           (Fragment) OS=Bungarus multicinctus PE=2 SV=1
          Length = 137

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 183 AGTCGSVPCWGCERLRACCRKGGATEEGTHSQQAKRYC 296
           AGTCG + C  C+R  A C       EG  +   KR+C
Sbjct: 100 AGTCGRIVC-DCDRTAALCFGNSEYIEGHKNIDTKRHC 136


>sp|P08553|NFM_MOUSE Neurofilament medium polypeptide OS=Mus
           musculus GN=Nefm PE=1 SV=4
          Length = 848

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +1

Query: 70  KLNL*KGMATEVQEPANGNLKKEEAEPLGELRGKEDLKQAPA--DLCHAGDVNGCEPVAE 243
           K++L K    E  +P     +K E E   E  G +   Q     D+   G+V G E   E
Sbjct: 687 KVSLEKDTKEEKPQPQEKVKEKAEEEGGSEEEGSDRSPQESKKEDIAINGEVEGKEE--E 744

Query: 244 KEEPLKKVPTPNKQKGIVLDGVDEEGATE 330
           ++E  +K     ++KG+V +G+D   A E
Sbjct: 745 EQETQEKGSGREEEKGVVTNGLDVSPAEE 773
tr_hit_id Q2HE53
Definition tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 88
Score (bit) 37.7
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949157|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_D20, 5'
         (646 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaet...    38   0.60 
tr|Q7PYF9|Q7PYF9_ANOGA AGAP001923-PA (Fragment) OS=Anopheles gam...    36   2.3  
tr|B7DKQ2|B7DKQ2_DESSA Translation initiation factor IF-2 domain...    35   3.0  
tr|Q57WY4|Q57WY4_9TRYP Putative uncharacterized protein OS=Trypa...    35   3.9  
tr|B8BIJ6|B8BIJ6_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.7  
tr|Q5A1W9|Q5A1W9_CANAL Putative uncharacterized protein HST3 OS=...    34   6.7  
tr|Q4XZ17|Q4XZ17_PLACH Putative uncharacterized protein (Fragmen...    34   8.7  

>tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_01501 PE=4 SV=1
          Length = 6459

 Score = 37.7 bits (86), Expect = 0.60
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
 Frame = +1

Query: 100  EVQEPANGNLKKEEAEPLGEL---------RGKEDLKQAPADLCHAGDVNGCEPVAEKEE 252
            E+Q+P+  +  + E  P G +         +GKE  +  P  L  A  V G  PV EK  
Sbjct: 4417 EIQQPSENSQPQPEVVPQGAMVEEVPETLTKGKEAFEPEPVSLPEAALVEGVIPVIEKPA 4476

Query: 253  PLKKVPTPNKQKGIVLDGVDEEGATEPQ 336
            P  + P P  ++ I    V EE +  PQ
Sbjct: 4477 PGAEEPAPALKETI---AVPEESSQLPQ 4501


>tr|Q7PYF9|Q7PYF9_ANOGA AGAP001923-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP001923 PE=4 SV=4
          Length = 723

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 106 QEPANGNLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKVPT 273
           Q+P +G +K+EE  PL  L  +  +  APAD+          P AEK++P K V T
Sbjct: 656 QQPPDGEIKEEENVPLPPLPVEVPVDVAPADVA---------PAAEKQQPRKPVDT 702


>tr|B7DKQ2|B7DKQ2_DESSA Translation initiation factor IF-2 domain
           protein OS=Desulfovibrio salexigens DSM 2638
           GN=DesalDRAFT_3469 PE=4 SV=1
          Length = 202

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +1

Query: 88  GMATEVQEPANGNLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKV 267
           G+    ++   G  K EEAE   E   KE+ K+APA+          E   EK++P KK 
Sbjct: 66  GVIVRRRKGGRGKAKAEEAETAKEAPAKEEKKEAPAEKKQEA---AKEKAPEKKKPAKKA 122

Query: 268 PTPNKQ 285
           P  +++
Sbjct: 123 PAKSEK 128


>tr|Q57WY4|Q57WY4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.3.1010 PE=4 SV=1
          Length = 600

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 166 GKEDLKQAPA-DLCHAGDVNGCEPVAEKEEPLKKV-PTPNKQKGIVLDGVDEEGATEPQ 336
           G+ED   A A D C  GD+NG     EK+   KKV   P     +V D   E+ A  PQ
Sbjct: 181 GEEDEVAAAARDECDVGDINGNTSKKEKKSAKKKVKKLPKAVASLVTDEASEQAAAAPQ 239


>tr|B8BIJ6|B8BIJ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37015 PE=4 SV=1
          Length = 597

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = -2

Query: 336 LRLSGTLFIYTIENNTFLLVGSGYLLQWLLLFCNRLAAVHIPSMAQIRRCL--------L 181
           L LSG     +I N     VG+   LQ+L L  NRL++V   S+  +   L        L
Sbjct: 31  LSLSGNNLSSSIPNG----VGNLSTLQYLFLSYNRLSSVIPASLVNLSNLLQLDISNNNL 86

Query: 180 QVFLPSELSQGLCLLFLQISVSRLLNFSRHSLSEVQL 70
              LPS+LS    +  + ISV+ L+     SL ++QL
Sbjct: 87  TGSLPSDLSSFKAIGLMDISVNNLVGSLPTSLGQLQL 123


>tr|Q5A1W9|Q5A1W9_CANAL Putative uncharacterized protein HST3
           OS=Candida albicans GN=HST3 PE=4 SV=1
          Length = 487

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 94  ATEVQEPANGNLKKEEAEP-LGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKVP 270
           AT+++  +   +   E    +  LR + D   +PA       +NG E   E++EP+ KV 
Sbjct: 420 ATKLKRKSPDEISANEVHSRVKRLRPRNDQLSSPAS-----SINGSEEEEEEDEPVAKVL 474

Query: 271 TPNKQKGIVLD 303
             N +KGI LD
Sbjct: 475 FENARKGITLD 485


>tr|Q4XZ17|Q4XZ17_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000562.02.0 PE=4 SV=1
          Length = 543

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +1

Query: 100 EVQEPANGNLKKEEAEPLGELRGKEDLKQAPAD---LCHAGDVNGCEPVAEKEEPLKKVP 270
           E+Q+ A+   KK + + + E+R + DLK A A    L +  ++N     +    P  K  
Sbjct: 297 EIQKEASQQAKKIQNKDMNEMRNENDLKHAHATTNLLQYDSEINSDTKKSNTSNPQSKTT 356

Query: 271 TPNKQKGIVLDGVD 312
             ++ K I+L+ +D
Sbjct: 357 PTSEGKNIMLEIID 370