DK949160 |
Clone id |
TST38A01NGRL0005_D23 |
Library |
TST38 |
Length |
683 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_D23. 5' end sequence. |
Accession |
DK949160 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1322Contig1 |
Sequence |
GAGCCCAAGATGAAGTGGACATGGCCTGCCAACAAGCTCTTACATCTTCGTTATGGAGGA CGGATTGTTGCCAGCCTCGCGTCCAGAGCCTCTCTTCGCTCACGCGTTTCAGCTGTACAA GTAAGACAAGAAGGGCCCTTCAGCTGGTTGTGCTTGCGCGCAAGAAGTCTGGTTTTGCAG AGATTCTCTTTAACCGAAGACATGCAGAGAAGGAGATAGCACTTCAGAGCTCTCGACGGT CGAGGTTGAAACGCGGTACTGTGTCTCCTCGACTTCCAGTCCCTGATCACATACCAAGGC CGCCTTATGTCAACTCTATTCGTGTGCCCGATTTCTCGAAGCTACCACAGATACACGATA GTCATGGCATAGAGTGCATGCGAGCTTCAGGCCGATTGGCAGCAGAGGTTCTCAATTACG CTGGCACTTTGGTCAAGCCAGGTGTGACAACAGATGAAATTGACAAGGCTGTGCATAAGA TGATTGTTGAAGCTGGGGCCTATCCCTCTCCACTTGGATATGGTGGTTTCCCAAAGAGTG TTTGCACTTCTGTAAATGATTGCATCTGCCATGGGATACCAGATTCTCGGTCCTTGCAGG ATGGAGACATTGTGAATATTGATGTGACTGTGTATTTAAATGGTTATCATGGGGACACTT CAAAGACTTATTTTTGTGGAGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FV50 |
Definition |
sp|Q9FV50|AMP1D_ARATH Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana |
Align length |
176 |
Score (bit) |
260.0 |
E-value |
5.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949160|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_D23, 5' (683 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9FV50|AMP1D_ARATH Methionine aminopeptidase 1D, chloroplasti... 260 5e-69 sp|Q9FV52|AMP1B_ARATH Methionine aminopeptidase 1B, chloroplasti... 244 2e-64 sp|Q9FV51|AMP1C_ARATH Methionine aminopeptidase 1C, chloroplasti... 216 1e-55 sp|Q54VU7|AMP1D_DICDI Methionine aminopeptidase 1D, mitochondria... 179 1e-44 sp|Q4VBS4|AMP1D_DANRE Methionine aminopeptidase 1D, mitochondria... 171 3e-42 sp|Q9CPW9|AMP1D_MOUSE Methionine aminopeptidase 1D, mitochondria... 165 2e-40 sp|Q6UB28|AMP1D_HUMAN Methionine aminopeptidase 1D, mitochondria... 165 2e-40 sp|P0A5J2|AMPM_MYCTU Methionine aminopeptidase OS=Mycobacterium ... 159 1e-38 sp|P0A5J3|AMPM_MYCBO Methionine aminopeptidase OS=Mycobacterium ... 159 1e-38 sp|A6QLA4|AMPM1_BOVIN Methionine aminopeptidase 1 OS=Bos taurus ... 149 1e-35 sp|Q5RBF3|AMPM1_PONAB Methionine aminopeptidase 1 OS=Pongo abeli... 148 2e-35 sp|P53582|AMPM1_HUMAN Methionine aminopeptidase 1 OS=Homo sapien... 148 2e-35 sp|Q5I0A0|AMPM1_XENTR Methionine aminopeptidase 1 OS=Xenopus tro... 146 1e-34 sp|Q5ZIM5|AMPM1_CHICK Methionine aminopeptidase 1 OS=Gallus gall... 146 1e-34 sp|Q8BP48|AMPM1_MOUSE Methionine aminopeptidase 1 OS=Mus musculu... 145 2e-34 sp|Q7ZWV9|AMPM1_XENLA Methionine aminopeptidase 1 OS=Xenopus lae... 144 6e-34 sp|Q4QRK0|AMPM1_DANRE Methionine aminopeptidase 1 OS=Danio rerio... 144 6e-34 sp|Q54WU3|AMPM1_DICDI Methionine aminopeptidase 1 OS=Dictyosteli... 141 3e-33 sp|Q9SLN5|AMP1A_ARATH Methionine aminopeptidase 1A OS=Arabidopsi... 141 3e-33 sp|Q01662|AMPM1_YEAST Methionine aminopeptidase 1 OS=Saccharomyc... 137 4e-32 sp|O59730|AMPM1_SCHPO Probable methionine aminopeptidase 1 OS=Sc... 137 5e-32 sp|Q9ZCD3|AMPM_RICPR Methionine aminopeptidase OS=Rickettsia pro... 125 2e-28 sp|P53579|AMPM1_SYNY3 Putative methionine aminopeptidase A OS=Sy... 119 1e-26 sp|P0A1X6|AMPM_SALTY Methionine aminopeptidase OS=Salmonella typ... 118 3e-26 sp|P0A1X7|AMPM_SALTI Methionine aminopeptidase OS=Salmonella typ... 118 3e-26 sp|P0AE21|AMPM_SHIFL Methionine aminopeptidase OS=Shigella flexn... 117 4e-26 sp|P0AE18|AMPM_ECOLI Methionine aminopeptidase OS=Escherichia co... 117 4e-26 sp|P0AE19|AMPM_ECOL6 Methionine aminopeptidase OS=Escherichia co... 117 4e-26 sp|P0AE20|AMPM_ECO57 Methionine aminopeptidase OS=Escherichia co... 117 4e-26 sp|Q8K9T1|AMPM_BUCAP Methionine aminopeptidase OS=Buchnera aphid... 111 4e-24
>sp|Q9FV50|AMP1D_ARATH Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1 Length = 350
Score = 260 bits (664), Expect = 5e-69 Identities = 123/176 (69%), Positives = 144/176 (81%) Frame = +3
Query: 153 LARKKSGFAEILFNRRHAEKEIALQSSRRSRLKRGTVSPRLPVPDHIPRPPYVNSIRVPD 332 L+R SG ++LFNRR+ ++ I +R RL+ G VSPR PVP HI +PPYV+S++ P Sbjct: 44 LSRTFSGLTDLLFNRRNEDEVI---DGKRKRLRPGNVSPRRPVPGHITKPPYVDSLQAPG 100
Query: 333 FSKLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKPGVTTDEIDKAVHKMIVEAGAYPSP 512 S ++HD GIECMRASG LAA V +YAGTLVKPGVTTDEID+AVH MI+E GAYPSP Sbjct: 101 ISSGLEVHDKKGIECMRASGILAARVRDYAGTLVKPGVTTDEIDEAVHNMIIENGAYPSP 160
Query: 513 LGYGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNIDVTVYLNGYHGDTSKTYFCG 680 LGYGGFPKSVCTSVN+CICHGIPDSR L+DGDI+NIDVTVYLNGYHGDTS T+FCG Sbjct: 161 LGYGGFPKSVCTSVNECICHGIPDSRPLEDGDIINIDVTVYLNGYHGDTSATFFCG 216
>sp|Q9FV52|AMP1B_ARATH Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2 Length = 369
Score = 244 bits (624), Expect = 2e-64 Identities = 123/180 (68%), Positives = 138/180 (76%) Frame = +3
Query: 141 QLVVLARKKSGFAEILFNRRHAEKEIALQSSRRSRLKRGTVSPRLPVPDHIPRPPYVNSI 320 Q V A+K SG E + R+ E E + R L+RG VSPRL VPDHIPRPPYV S Sbjct: 56 QFHVSAKKVSGLEEAIRIRKMRELETKSKVRRNPPLRRGRVSPRLLVPDHIPRPPYVESG 115
Query: 321 RVPDFSKLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKPGVTTDEIDKAVHKMIVEAGA 500 +PD S QI GI MRA+ LAA VLNYAGTLVKP VTT+EIDKAVH MI+EAGA Sbjct: 116 VLPDISSEFQIPGPEGIAKMRAACELAARVLNYAGTLVKPSVTTNEIDKAVHDMIIEAGA 175
Query: 501 YPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNIDVTVYLNGYHGDTSKTYFCG 680 YPSPLGYGGFPKSVCTSVN+C+CHGIPDSR LQ GDI+NIDVTVYL+GYHGDTS+T+FCG Sbjct: 176 YPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLDGYHGDTSRTFFCG 235
>sp|Q9FV51|AMP1C_ARATH Methionine aminopeptidase 1C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1C PE=2 SV=2 Length = 344
Score = 216 bits (549), Expect = 1e-55 Identities = 110/174 (63%), Positives = 131/174 (75%) Frame = +3
Query: 159 RKKSGFAEILFNRRHAEKEIALQSSRRSRLKRGTVSPRLPVPDHIPRPPYVNSIRVPDFS 338 +KKS I +R + + L+ L GTVSPRL VPDHI +P YV S +VP+ S Sbjct: 38 KKKSSSLRI---KRIQQLQSTLEDRINPPLVCGTVSPRLSVPDHILKPLYVESSKVPEIS 94
Query: 339 KLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKPGVTTDEIDKAVHKMIVEAGAYPSPLG 518 QI DS GI M+ + LAA VL+YAGTLV+P VTTDEIDKAVH+M++E GAYPSPLG Sbjct: 95 SELQIPDSIGIVKMKKACELAARVLDYAGTLVRPFVTTDEIDKAVHQMVIEFGAYPSPLG 154
Query: 519 YGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNIDVTVYLNGYHGDTSKTYFCG 680 YGGFPKSVCTSVN+C+ HGIPDSR LQ+GDI+NIDV VYL+GYHGDTSKT+ CG Sbjct: 155 YGGFPKSVCTSVNECMFHGIPDSRPLQNGDIINIDVAVYLDGYHGDTSKTFLCG 208
>sp|Q54VU7|AMP1D_DICDI Methionine aminopeptidase 1D, mitochondrial OS=Dictyostelium discoideum GN=map1d PE=3 SV=1 Length = 404
Score = 179 bits (454), Expect = 1e-44 Identities = 92/190 (48%), Positives = 123/190 (64%), Gaps = 2/190 (1%) Frame = +3
Query: 117 TSKTRRALQLVVLARKKSGFAEILFNRRHAEKEIALQSSRRSRLKRGTVSPRLPVPDHIP 296 T + R ++ L +K + E + + + L + + ++ G VSP+ +P HI Sbjct: 79 TEEIRDFVRSQRLTKKTASPLEGMNRKERRKMTTKLYRNPDNLIRGGIVSPQPLIPAHIK 138
Query: 297 RPPYVNSIRVPDFS--KLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKPGVTTDEIDKA 470 +P YV V DF +IH + IE MR G++A EVL YAGTLV+PG+TTDEIDK Sbjct: 139 KPKYVLGEPVIDFEIDDPIEIHTAESIEHMRVVGKMAKEVLEYAGTLVRPGITTDEIDKL 198
Query: 471 VHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNIDVTVYLNGYH 650 VH+ I++ GAYPSPLGY GFPKS+CTS+N+ +CHGIPD R L+ GDIV IDVT+Y NGYH Sbjct: 199 VHQNIIDRGAYPSPLGYKGFPKSICTSINEVLCHGIPDDRPLEFGDIVKIDVTLYYNGYH 258
Query: 651 GDTSKTYFCG 680 GDT T+ G Sbjct: 259 GDTCATFPVG 268
>sp|Q4VBS4|AMP1D_DANRE Methionine aminopeptidase 1D, mitochondrial OS=Danio rerio GN=map1d PE=2 SV=1 Length = 338
Score = 171 bits (434), Expect = 3e-42 Identities = 82/148 (55%), Positives = 104/148 (70%) Frame = +3
Query: 240 SRLKRGTVSPRLPVPDHIPRPPYVNSIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLNY 419 S ++ V P PVP HI RP YV+S +VP++ +I D I+ +R + +LA +L Sbjct: 54 SVVRPAIVRPAYPVPKHIQRPDYVSSSKVPEWPDYIEIKDEEQIQGLRRACQLARHILLL 113
Query: 420 AGTLVKPGVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQ 599 G +K G+TTDEID VH+ + YPSPL YGGFPKSVCTSVN+ +CHGIPDSR LQ Sbjct: 114 TGNSLKVGMTTDEIDFIVHQEAIRHNGYPSPLHYGGFPKSVCTSVNNVVCHGIPDSRPLQ 173
Query: 600 DGDIVNIDVTVYLNGYHGDTSKTYFCGA 683 DGDI+NIDVTVYL GYHGDTS+T+ G+ Sbjct: 174 DGDIINIDVTVYLEGYHGDTSETFLIGS 201
>sp|Q9CPW9|AMP1D_MOUSE Methionine aminopeptidase 1D, mitochondrial OS=Mus musculus GN=Map1d PE=2 SV=1 Length = 335
Score = 165 bits (418), Expect = 2e-40 Identities = 82/140 (58%), Positives = 99/140 (70%) Frame = +3
Query: 261 VSPRLPVPDHIPRPPYVNSIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKP 440 VSP PVP I +P YV + VPD+ ++ D I+ +R + RLA VL AG +K Sbjct: 58 VSPAHPVPKRIKKPDYVTTGIVPDWGDSIEVKDEDQIQGLREACRLARHVLLLAGKSLKV 117
Query: 441 GVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNI 620 +TT+EID VH I+ AYPSPLGYG FPKSVCTSVN+ +CHGIPDSR LQDGDI+NI Sbjct: 118 DMTTEEIDALVHWEIIRHDAYPSPLGYGRFPKSVCTSVNNVLCHGIPDSRPLQDGDIINI 177
Query: 621 DVTVYLNGYHGDTSKTYFCG 680 DVTVY NGYHGDTS+T+ G Sbjct: 178 DVTVYYNGYHGDTSETFLVG 197
>sp|Q6UB28|AMP1D_HUMAN Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1 Length = 335
Score = 165 bits (418), Expect = 2e-40 Identities = 80/140 (57%), Positives = 100/140 (71%) Frame = +3
Query: 261 VSPRLPVPDHIPRPPYVNSIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLNYAGTLVKP 440 VS PVP HI +P YV + VPD+ ++ + I+ + + +LA VL AG +K Sbjct: 58 VSSAHPVPKHIKKPDYVTTGIVPDWGDSIEVKNEDQIQGLHQACQLARHVLLLAGKSLKV 117
Query: 441 GVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQDGDIVNI 620 +TT+EID VH+ I+ AYPSPLGYGGFPKSVCTSVN+ +CHGIPDSR LQDGDI+NI Sbjct: 118 DMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINI 177
Query: 621 DVTVYLNGYHGDTSKTYFCG 680 DVTVY NGYHGDTS+T+ G Sbjct: 178 DVTVYYNGYHGDTSETFLVG 197
>sp|P0A5J2|AMPM_MYCTU Methionine aminopeptidase OS=Mycobacterium tuberculosis GN=map PE=1 SV=1 Length = 285
Score = 159 bits (403), Expect = 1e-38 Identities = 80/148 (54%), Positives = 99/148 (66%) Frame = +3
Query: 237 RSRLKRGTVSPRLPVPDHIPRPPYVNSIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLN 416 R+ L G +SP PVP+ I RP YV + S+ P + IE MR +GR+AA L Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSE-PWVQTPEVIEKMRVAGRIAAGALA 62
Query: 417 YAGTLVKPGVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSL 596 AG V PGVTTDE+D+ H+ +V+ GAYPS LGY GFPKS CTS+N+ ICHGIPDS + Sbjct: 63 EAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVI 122
Query: 597 QDGDIVNIDVTVYLNGYHGDTSKTYFCG 680 DGDIVNIDVT Y+ G HGDT+ T+ G Sbjct: 123 TDGDIVNIDVTAYIGGVHGDTNATFPAG 150
>sp|P0A5J3|AMPM_MYCBO Methionine aminopeptidase OS=Mycobacterium bovis GN=map PE=3 SV=1 Length = 285
Score = 159 bits (403), Expect = 1e-38 Identities = 80/148 (54%), Positives = 99/148 (66%) Frame = +3
Query: 237 RSRLKRGTVSPRLPVPDHIPRPPYVNSIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLN 416 R+ L G +SP PVP+ I RP YV + S+ P + IE MR +GR+AA L Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSE-PWVQTPEVIEKMRVAGRIAAGALA 62
Query: 417 YAGTLVKPGVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSL 596 AG V PGVTTDE+D+ H+ +V+ GAYPS LGY GFPKS CTS+N+ ICHGIPDS + Sbjct: 63 EAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVI 122
Query: 597 QDGDIVNIDVTVYLNGYHGDTSKTYFCG 680 DGDIVNIDVT Y+ G HGDT+ T+ G Sbjct: 123 TDGDIVNIDVTAYIGGVHGDTNATFPAG 150
>sp|A6QLA4|AMPM1_BOVIN Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1 Length = 386
Score = 149 bits (376), Expect = 1e-35 Identities = 76/145 (52%), Positives = 94/145 (64%), Gaps = 7/145 (4%) Frame = +3
Query: 267 PRLPVPDHIPRPPYVN-------SIRVPDFSKLPQIHDSHGIECMRASGRLAAEVLNYAG 425 P PVP +I RP Y + S + + ++ S IE MR RLA EVL+ A Sbjct: 95 PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDIAA 154
Query: 426 TLVKPGVTTDEIDKAVHKMIVEAGAYPSPLGYGGFPKSVCTSVNDCICHGIPDSRSLQDG 605 L+KPGVTT+EID AVH + YPSPL Y FPKS CTSVN+ ICHGIPD R LQ+G Sbjct: 155 GLIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEG 214
Query: 606 DIVNIDVTVYLNGYHGDTSKTYFCG 680 DIVN+D+T+Y NGYHGD ++T+F G Sbjct: 215 DIVNVDITLYRNGYHGDLNETFFVG 239
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQC2 |
Definition |
tr|B8LQC2|B8LQC2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
222 |
Score (bit) |
280.0 |
E-value |
5.0e-74 |
Report |
|