NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949171
Clone id TST38A01NGRL0005_E10
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_E10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAAAAATTATCTCTTGTAGCAGAGGCAGGAGCTGAAGATATGGAAGCTACGGGCCTGGGC
TTAAGACTATATCCTTTGCCGTCGACGTCTCCTGCTGCCGCTTCGTTTTCACGCAGATTA
AGACTCTCTCAGACCCTCCTTCGTCGGCCCCGTCTCTTCTCGCACAATTGTGCACGCATT
TTCGCATCAGCAGCAGAAGAATCAGAAGATGAGGAGAGCGCTGGGCCTTCTAGATCCATA
GGCCTTTCTGCAGATGACCTCGAACAAAGGCTTGGAAAGCGTAGGCGGTCGCGCAAAGAA
AAGCCTAACGCAGATAGCGTCGATCCCAAGCCTCCGCCGAAGGATTGGGAGTCCATGACT
CTCGCAGAGAAGGCATGGGAAATTTACGTTGGTGAAAAGGGAGCCCTTTTCTGGCTGAAC
AAGATTGCCTATGCTGCAATTTTTGTGATCGTGGGAGGTTGGATCGCGTTTCGGTTTGTC
GGCCCTGCACTGAACCTTTACCAGCTTGACAGTCCCCTTCTTCCACCGACTGAGGTCCTC
AGTGGATCATCGAAATGAGGTATTCTTCACCTCCTCATCACTGATCTTGGTTTTGTTACT
ATGCAGAGGTATTATGGGCAGATTAACGGTGCTTAGGATCACACCCCANATTGTATAATT
TCCAGCTCTGGTGTGCTGCGTTTT
■■Homology search results ■■ -
sp_hit_id Q3ZBJ8
Definition sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus
Align length 65
Score (bit) 34.3
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949171|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_E10, 5'
         (684 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus GN=SLC25A37 PE=...    34   0.63 
sp|Q9NYZ2|MFRN1_HUMAN Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 P...    34   0.83 
sp|Q66H23|MFRN1_RAT Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a3...    33   1.4  
sp|Q920G8|MFRN1_MOUSE Mitoferrin-1 OS=Mus musculus GN=Slc25a37 P...    33   1.4  
sp|Q5UQE0|YR476_MIMIV Putative AAA family ATPase R476 OS=Acantha...    31   5.4  
sp|Q6P0N0|M18BP_HUMAN Mis18-binding protein 1 OS=Homo sapiens GN...    30   9.1  
sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo...    30   9.2  

>sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus GN=SLC25A37 PE=2
           SV=1
          Length = 171

 Score = 34.3 bits (77), Expect = 0.63
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 520 EGDCQAGKGSVQGRQTETRSNLPRSQKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 350
           +GD + G G  +   +E   NLP S  L    +  A  G+  H   +P+ S++   +S  
Sbjct: 18  DGDSRDGGGGCKDAGSEDYENLPTSASLSTHMTAGAMAGILEHSVMYPVDSVKTRMQSLN 77

Query: 349 PNPSA 335
           P+P A
Sbjct: 78  PDPKA 82


>sp|Q9NYZ2|MFRN1_HUMAN Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1
           SV=2
          Length = 338

 Score = 33.9 bits (76), Expect = 0.83
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -3

Query: 520 EGDCQAGKGSVQGRQTETRSNLPRSQKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 350
           +GD + G G      +E   NLP S  +    +  A  G+  H   +P+ S++   +S +
Sbjct: 18  DGDSRDGGGGKDATGSEDYENLPTSASVSTHMTAGAMAGILEHSVMYPVDSVKTRMQSLS 77

Query: 349 PNPSAE 332
           P+P A+
Sbjct: 78  PDPKAQ 83


>sp|Q66H23|MFRN1_RAT Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37
           PE=2 SV=1
          Length = 338

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 520 EGDCQAGKGSVQGRQTETRSNLPRSQKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 350
           +GDC+ G    +   +E   NLP S  +    +  A  G+  H   +P+ S++   +S  
Sbjct: 18  DGDCRDGGCGSKDAGSEDYENLPTSASVSTHMTAGAMAGILEHSIMYPVDSVKTRMQSLN 77

Query: 349 PNPSA 335
           P+P A
Sbjct: 78  PDPKA 82


>sp|Q920G8|MFRN1_MOUSE Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=2
           SV=1
          Length = 338

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 520 EGDCQAGKGSVQGRQTETRSNLPRSQKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 350
           +GDC+ G    +   +E   NLP S  +    +  A  G+  H   +P+ S++   +S  
Sbjct: 18  DGDCRDGGCGSKDAGSEDYENLPTSASVSTHMTAGAMAGILEHSIMYPVDSVKTRMQSLN 77

Query: 349 PNPSA 335
           P+P A
Sbjct: 78  PDPKA 82


>sp|Q5UQE0|YR476_MIMIV Putative AAA family ATPase R476
           OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3
           SV=1
          Length = 855

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 657 YTXWGVILSTVNLPIIPLHSNKTKISDEEVKNTSF-R*STEDLSRWKKGTVKLVKVQCR 484
           YT +G+I S  N+  +P  +NK+ + +  V+ T   +   ++L ++  G  K ++   R
Sbjct: 524 YTTYGIITSNTNIKFVPAKANKSYVINNSVEQTEISKNPVQELEKYVGGISKELETVVR 582


>sp|Q6P0N0|M18BP_HUMAN Mis18-binding protein 1 OS=Homo sapiens
           GN=M18BP1 PE=1 SV=1
          Length = 1132

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -3

Query: 520 EGDCQAGKGSVQGRQTETRSN---LPRSQKLQHRQSCSARKGLPFHQRKFPMPSLRESWT 350
           + D  + + SVQG   E+ +N   LP  QK+Q    C   K  P H   + +P+L +   
Sbjct: 174 QSDDSSLRASVQGVPLESSNNDIFLPVKQKIQ----CQQEKKAPLHNLTYELPTLNQEQE 229

Query: 349 PNPSAEAWDRRYLR 308
              + EA ++   R
Sbjct: 230 NFLAVEARNKTLTR 243


>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo
           sapiens GN=RAD51C PE=1 SV=1
          Length = 376

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 513 TVKLVKVQCRADKPKRDPTSHDHKNCSIGNLVQPE 409
           T+++++ +C  +KP+   TS  HK C+   L++ E
Sbjct: 60  TLQIIRRECLTNKPRYAGTSESHKKCTALELLEQE 94
tr_hit_id A9SQL7
Definition tr|A9SQL7|A9SQL7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 114
Score (bit) 136.0
E-value 1.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949171|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_E10, 5'
         (684 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SQL7|A9SQL7_PHYPA Predicted protein OS=Physcomitrella paten...   136   1e-30
tr|B7FLL9|B7FLL9_MEDTR Putative uncharacterized protein OS=Medic...   125   3e-27
tr|A9NKY5|A9NKY5_PICSI Putative uncharacterized protein OS=Picea...   120   6e-26
tr|A7QDZ1|A7QDZ1_VITVI Chromosome chr4 scaffold_83, whole genome...   120   8e-26
tr|Q8LDU3|Q8LDU3_ARATH Putative uncharacterized protein OS=Arabi...   112   2e-23
tr|Q8S8K0|Q8S8K0_ARATH Expressed protein (Putative uncharacteriz...   112   2e-23
tr|B6TLH7|B6TLH7_MAIZE Putative uncharacterized protein OS=Zea m...   112   2e-23
tr|Q5Z9P9|Q5Z9P9_ORYSJ Os06g0715200 protein OS=Oryza sativa subs...   110   6e-23
tr|A2YGZ6|A2YGZ6_ORYSI Putative uncharacterized protein OS=Oryza...   110   6e-23
tr|B6T6P1|B6T6P1_MAIZE Putative uncharacterized protein OS=Zea m...   108   4e-22
tr|A8I5G0|A8I5G0_CHLRE Predicted protein OS=Chlamydomonas reinha...    90   2e-16
tr|Q00SS6|Q00SS6_OSTTA Chromosome 18 contig 1, DNA sequence OS=O...    62   3e-08
tr|A5B5L4|A5B5L4_VITVI Putative uncharacterized protein OS=Vitis...    61   8e-08
tr|A4S9R5|A4S9R5_OSTLU Predicted protein OS=Ostreococcus lucimar...    59   3e-07
tr|A4S1E7|A4S1E7_OSTLU Predicted protein OS=Ostreococcus lucimar...    37   0.91 
tr|Q8J3E7|Q8J3E7_9HIV1 Gp120 protein (Fragment) OS=Human immunod...    35   4.5  
tr|Q0S7F6|Q0S7F6_RHOSR Putative uncharacterized protein OS=Rhodo...    35   4.5  
tr|A4J196|A4J196_DESRM Transposase and inactivated derivatives-l...    35   5.8  
tr|Q9U919|Q9U919_9TRYP PTGT-4 protein OS=Trypanosoma brucei GN=p...    35   5.9  
tr|Q5C292|Q5C292_SCHJA SJCHGC03959 protein (Fragment) OS=Schisto...    35   5.9  
tr|B2MVX8|B2MVX8_SHEEP SLC25A37 OS=Ovis aries PE=2 SV=1                34   7.6  
tr|Q1MHS6|Q1MHS6_RHIL3 Putative nitrate transport protein OS=Rhi...    34   7.7  

>tr|A9SQL7|A9SQL7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166191 PE=4 SV=1
          Length = 237

 Score =  136 bits (343), Expect = 1e-30
 Identities = 63/114 (55%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
 Frame = +1

Query: 223 GPSRSIGLSADDLEQRLGKRRRSRKEKPNADSVDPKPPP----KDWESMTLAEKAWEIYV 390
           G S +     ++LE RLG  R+SR+E     S  P P P    K W+ M+LAEKAW++Y+
Sbjct: 70  GSSEADARRLEELEARLGVNRKSRREGGGVQSPPPAPKPAAPAKAWDDMSLAEKAWQLYI 129

Query: 391 GEKGALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSGSS 552
           GE+GALFWLNK AYA+IF+I+GGWI FRFVGPAL  Y+L SPLLPP +V++G++
Sbjct: 130 GEEGALFWLNKAAYASIFIIIGGWIVFRFVGPALGWYELSSPLLPPEQVIAGTA 183


>tr|B7FLL9|B7FLL9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 183

 Score =  125 bits (314), Expect = 3e-27
 Identities = 63/109 (57%), Positives = 79/109 (72%), Gaps = 8/109 (7%)
 Frame = +1

Query: 250 ADDLEQRLGKR--RRSRKEKPNADSVDP------KPPPKDWESMTLAEKAWEIYVGEKGA 405
           A+ +E RL +R  R++RK++ N    +       K  PK WE M+  EKA E+YVGEKGA
Sbjct: 75  AEPVELRLRRRSKRQARKQRENGTLTNSIRQPKAKAAPKKWEDMSFTEKALELYVGEKGA 134

Query: 406 LFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSGSS 552
           LFWLNK AYA+IF+++G WIAFRFVGPALN+YQLD PLL P +VL GSS
Sbjct: 135 LFWLNKFAYASIFIMIGLWIAFRFVGPALNIYQLDQPLLSPEDVLKGSS 183


>tr|A9NKY5|A9NKY5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 175

 Score =  120 bits (302), Expect = 6e-26
 Identities = 58/108 (53%), Positives = 77/108 (71%)
 Frame = +1

Query: 223 GPSRSIGLSADDLEQRLGKRRRSRKEKPNADSVDPKPPPKDWESMTLAEKAWEIYVGEKG 402
           GPS S  L + ++   LG+R R ++++ +  +  P P  KDWESMTL EKA E+Y+GEKG
Sbjct: 68  GPSPS-RLESLEVRAGLGRRARRKRDRVSDPNQVPVPKKKDWESMTLQEKAVEVYMGEKG 126

Query: 403 ALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSG 546
            LFWLNK AYA+IF+++G W+ FRFVGP L LYQL+S LL PT+   G
Sbjct: 127 ILFWLNKSAYASIFILIGAWVLFRFVGPLLGLYQLESNLLEPTKAFGG 174


>tr|A7QDZ1|A7QDZ1_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036793001
           PE=4 SV=1
          Length = 178

 Score =  120 bits (301), Expect = 8e-26
 Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 6/101 (5%)
 Frame = +1

Query: 265 QRLGKRRRSRKEKPN------ADSVDPKPPPKDWESMTLAEKAWEIYVGEKGALFWLNKI 426
           +R  K+RR  +++        A++    PPPKDW+ M++ EKA E+YVGEKGALFWLNK 
Sbjct: 78  RRGSKKRRQMQQQDGGVANKAAEASSTTPPPKDWKDMSITEKAIELYVGEKGALFWLNKF 137

Query: 427 AYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSGS 549
           AYA+IF+++G WI FRFVGPALNLYQLDS  L P+ +  GS
Sbjct: 138 AYASIFIVIGAWILFRFVGPALNLYQLDSAPLSPSSLFKGS 178


>tr|Q8LDU3|Q8LDU3_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 158

 Score =  112 bits (281), Expect = 2e-23
 Identities = 58/114 (50%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
 Frame = +1

Query: 223 GPSRSIGLSADDLEQRL--GKRRRSRKEKPNA----DSVDPKPPPKDWESMTLAEKAWEI 384
           G    I    D +E R   G RR+ R+E             +   K WE MTL EKA E+
Sbjct: 45  GDEEKITQPLDGVEIRFKRGSRRKMREEGSGEGGGQSGKKKETVQKPWEEMTLNEKALEL 104

Query: 385 YVGEKGALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSG 546
           YVGEKG LFWLNK+AYA+I++++GGWI FRFVGPA NLYQLD+P L P  +L G
Sbjct: 105 YVGEKGLLFWLNKLAYASIYIVIGGWILFRFVGPAFNLYQLDTPPLDPKNILKG 158


>tr|Q8S8K0|Q8S8K0_ARATH Expressed protein (Putative uncharacterized
           protein At2g17972) (Putative uncharacterized protein
           At2g17972/T27K22.22) OS=Arabidopsis thaliana
           GN=At2g17972/T27K22.22 PE=2 SV=1
          Length = 158

 Score =  112 bits (280), Expect = 2e-23
 Identities = 58/114 (50%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
 Frame = +1

Query: 223 GPSRSIGLSADDLEQRL--GKRRRSRKEKPNA----DSVDPKPPPKDWESMTLAEKAWEI 384
           G    I    D +E R   G RR+ R+E             +   K WE MTL EKA E+
Sbjct: 45  GDEEKITQPLDGVEIRFKRGSRRKMREEGSGEGGGQSGKKKETVQKPWEEMTLNEKALEL 104

Query: 385 YVGEKGALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPLLPPTEVLSG 546
           YVGEKG LFWLNK+AYA+I++++GGWI FRFVGPA NLYQLD+P L P  +L G
Sbjct: 105 YVGEKGLLFWLNKLAYASIYIVIGGWIFFRFVGPAFNLYQLDTPPLDPKNILKG 158


>tr|B6TLH7|B6TLH7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 183

 Score =  112 bits (280), Expect = 2e-23
 Identities = 55/92 (59%), Positives = 66/92 (71%), Gaps = 6/92 (6%)
 Frame = +1

Query: 295 KEKPNADSVDPKPPPKD------WESMTLAEKAWEIYVGEKGALFWLNKIAYAAIFVIVG 456
           K+KP A +    P PK       WE M+L EKA ++YVGEKG LFWLNK AYA+IF++VG
Sbjct: 92  KKKP-APAASSSPVPKKKVGRKGWEEMSLGEKAVDLYVGEKGLLFWLNKFAYASIFIMVG 150

Query: 457 GWIAFRFVGPALNLYQLDSPLLPPTEVLSGSS 552
            W+ FRFVGP+L LYQLD+P LPPT V SG S
Sbjct: 151 AWVLFRFVGPSLGLYQLDAPPLPPTAVFSGGS 182


>tr|Q5Z9P9|Q5Z9P9_ORYSJ Os06g0715200 protein OS=Oryza sativa subsp.
           japonica GN=P0481E08.12 PE=2 SV=1
          Length = 193

 Score =  110 bits (276), Expect = 6e-23
 Identities = 48/70 (68%), Positives = 60/70 (85%)
 Frame = +1

Query: 340 KDWESMTLAEKAWEIYVGEKGALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPL 519
           K+WE M++AEKA E+YVGEKG LFWLNK AYA+IF++VG WI FRFVGP++ LYQLD+P 
Sbjct: 123 KEWEEMSMAEKAGELYVGEKGLLFWLNKFAYASIFIMVGAWILFRFVGPSIGLYQLDAPP 182

Query: 520 LPPTEVLSGS 549
           L PT+V +GS
Sbjct: 183 LAPTDVFAGS 192


>tr|A2YGZ6|A2YGZ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24461 PE=4 SV=1
          Length = 193

 Score =  110 bits (276), Expect = 6e-23
 Identities = 48/70 (68%), Positives = 60/70 (85%)
 Frame = +1

Query: 340 KDWESMTLAEKAWEIYVGEKGALFWLNKIAYAAIFVIVGGWIAFRFVGPALNLYQLDSPL 519
           K+WE M++AEKA E+YVGEKG LFWLNK AYA+IF++VG WI FRFVGP++ LYQLD+P 
Sbjct: 123 KEWEEMSMAEKAGELYVGEKGLLFWLNKFAYASIFIMVGAWILFRFVGPSIGLYQLDAPP 182

Query: 520 LPPTEVLSGS 549
           L PT+V +GS
Sbjct: 183 LAPTDVFAGS 192


>tr|B6T6P1|B6T6P1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 183

 Score =  108 bits (269), Expect = 4e-22
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
 Frame = +1

Query: 295 KEKPNADSVDPKPPPKD------WESMTLAEKAWEIYVGEKGALFWLNKIAYAAIFVIVG 456
           K+KP A +    P PK       WE M+L EKA ++YVGEKG LF LNK AYA+IF++VG
Sbjct: 92  KKKP-APAASSSPAPKKKVGRKGWEEMSLGEKAVDLYVGEKGLLFXLNKFAYASIFIMVG 150

Query: 457 GWIAFRFVGPALNLYQLDSPLLPPTEVLSGSS 552
            W+ FRFVGP+L LYQLD+P LPPT V SG S
Sbjct: 151 AWVLFRFVGPSLGLYQLDAPPLPPTAVFSGGS 182