DK949243 |
Clone id |
TST38A01NGRL0005_H14 |
Library |
TST38 |
Length |
687 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_H14. 5' end sequence. |
Accession |
DK949243 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL2288Contig1 |
Sequence |
GTCGTCCATGGGAGTGTGCGTGTCTTTATGAGAACTTCACAAAGGCCATCTTCGGAGAAT TTCCACTCTGCTCATTTGCATGTTGTGAAAAGATGCGACATGACACACACGCGCGCGTGC ACACACATATATTGCAGATCGATTAATTGCTTAGTGTTGTGGGTGATTGCACCATGAGAG TGTGAATATAAAAAACAACGCTTGTTAGCTGCATGCGTCATCGAAATTCTTGACCGATTT TCTGCGGTAATCGGCTCGATTTGAAACAAACAAACCTGTGCAGCGGATAACCTTTGCCGA GGATTGTTATCTTGTCATCTCACAAAAGCTGCCAAAATGTTGTGTTGTGTCTCCATTTGT GTGTATGTACATATGCATTTTCCAAGGCATGTTTATACATGGACTTTGGAAGAAGAGTAT GACTTATTTTTTGGTTGAAAACAGGCCAATTGTATCGATTCCACTGTTCCTGCAGAAGCT GTCTTTGCACAGGAAGTGAAGAAGCTGCAAAAGGAGCAGTTCAAGCCAGCAGAACAAGTT ACTTTGGAACCTTTTGAAAGGGATCATGCTTGTGTAGTTGGTGGCTACAGGGTACCTAAN AAGCAGAAGGTGTGAGCTTAGCTTGTTGATGCACGAGAGCAGTGAGTTCTTGATGATGCC TGCACTATTTCCATAGTCACGGTCATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94AH9 |
Definition |
sp|Q94AH9|FBRL2_ARATH rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana |
Align length |
56 |
Score (bit) |
103.0 |
E-value |
7.0e-22 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7G147 |
Definition |
tr|Q7G147|Q7G147_PICMA Fibrillarin (Fragment) OS=Picea mariana |
Align length |
56 |
Score (bit) |
109.0 |
E-value |
1.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949243|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_H14, 5' (687 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q7G147|Q7G147_PICMA Fibrillarin (Fragment) OS=Picea mariana G... 109 1e-22 tr|O65058|O65058_PICMA Probable fibrillarin (Fragment) OS=Picea ... 109 1e-22 tr|A9P1P1|A9P1P1_PICSI Putative uncharacterized protein OS=Picea... 109 1e-22 tr|Q25C91|Q25C91_TOBAC Tobacco fibrillarin homolog OS=Nicotiana ... 106 1e-21 tr|Q1EI36|Q1EI36_NICBE Fibrillarin 2 OS=Nicotiana benthamiana GN... 106 1e-21 tr|B7VCB9|B7VCB9_NICBE Fibrillarin 2 OS=Nicotiana benthamiana GN... 106 1e-21 tr|A9CSG4|A9CSG4_9MAGN Putative fibrillarin (Fragment) OS=Vitis ... 105 3e-21 tr|A7QG46|A7QG46_VITVI Chromosome undetermined scaffold_91, whol... 105 3e-21 tr|A5AUT4|A5AUT4_VITVI Putative uncharacterized protein OS=Vitis... 105 3e-21 tr|A9TSL7|A9TSL7_PHYPA Predicted protein OS=Physcomitrella paten... 104 6e-21 tr|A9RL91|A9RL91_PHYPA Predicted protein OS=Physcomitrella paten... 104 6e-21 tr|A9TM73|A9TM73_PHYPA Predicted protein OS=Physcomitrella paten... 103 8e-21 tr|A9T765|A9T765_PHYPA Predicted protein OS=Physcomitrella paten... 103 8e-21 tr|A9T052|A9T052_PHYPA Predicted protein OS=Physcomitrella paten... 103 8e-21 tr|A9S7H0|A9S7H0_PHYPA Predicted protein OS=Physcomitrella paten... 103 8e-21 tr|Q0WLG3|Q0WLG3_ARATH Fibrillarin homolog OS=Arabidopsis thalia... 103 1e-20 tr|Q6AT27|Q6AT27_ORYSJ Os05g0176000 protein OS=Oryza sativa subs... 103 1e-20 tr|B6T4G7|B6T4G7_MAIZE Fibrillarin-2 OS=Zea mays PE=2 SV=1 102 3e-20 tr|Q6K701|Q6K701_ORYSJ Putative fibrillarin (Putative uncharacte... 101 5e-20 tr|Q0DWC1|Q0DWC1_ORYSJ Os02g0821800 protein (Fragment) OS=Oryza ... 101 5e-20 tr|B8AYL8|B8AYL8_ORYSI Putative uncharacterized protein OS=Oryza... 101 5e-20 tr|B7FA85|B7FA85_ORYSJ cDNA, clone: J100055L06, full insert sequ... 101 5e-20 tr|A2XB50|A2XB50_ORYSI Putative uncharacterized protein OS=Oryza... 101 5e-20 tr|Q7ZX93|Q7ZX93_XENLA LOC398434 protein (Fragment) OS=Xenopus l... 84 1e-14 tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicalis GN=fbl ... 84 1e-14 tr|Q6GNA5|Q6GNA5_XENLA LOC398434 protein OS=Xenopus laevis GN=LO... 84 1e-14 tr|Q3UJS2|Q3UJS2_MOUSE Putative uncharacterized protein OS=Mus m... 84 1e-14 tr|A6QLX2|A6QLX2_BOVIN FBL protein (Fragment) OS=Bos taurus GN=F... 84 1e-14 tr|Q96BS4|Q96BS4_HUMAN FBL protein (Fragment) OS=Homo sapiens GN... 84 1e-14 tr|B5BUE8|B5BUE8_HUMAN Fibrillarin (Fragment) OS=Homo sapiens GN... 84 1e-14
>tr|Q7G147|Q7G147_PICMA Fibrillarin (Fragment) OS=Picea mariana GN=Sb21 PE=4 SV=1 Length = 76
Score = 109 bits (273), Expect = 1e-22 Identities = 52/56 (92%), Positives = 54/56 (96%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQKEQFKP EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 15 KANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 70
>tr|O65058|O65058_PICMA Probable fibrillarin (Fragment) OS=Picea mariana GN=Sb21 PE=2 SV=1 Length = 249
Score = 109 bits (273), Expect = 1e-22 Identities = 52/56 (92%), Positives = 54/56 (96%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQKEQFKP EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 188 KANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 243
>tr|A9P1P1|A9P1P1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 312
Score = 109 bits (273), Expect = 1e-22 Identities = 52/56 (92%), Positives = 54/56 (96%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQKEQFKP EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 251 KANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 306
>tr|Q25C91|Q25C91_TOBAC Tobacco fibrillarin homolog OS=Nicotiana tabacum GN=NtFib1 PE=2 SV=1 Length = 314
Score = 106 bits (265), Expect = 1e-21 Identities = 51/56 (91%), Positives = 52/56 (92%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ EQFKP EQVTLEPFERDHACVVG YRVP KQK Sbjct: 256 KANCIDSTVPAEAVFAQEVKKLQAEQFKPMEQVTLEPFERDHACVVGAYRVPKKQK 311
>tr|Q1EI36|Q1EI36_NICBE Fibrillarin 2 OS=Nicotiana benthamiana GN=fib2 PE=2 SV=1 Length = 314
Score = 106 bits (265), Expect = 1e-21 Identities = 51/56 (91%), Positives = 52/56 (92%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ EQFKP EQVTLEPFERDHACVVG YRVP KQK Sbjct: 256 KANCIDSTVPAEAVFAQEVKKLQAEQFKPMEQVTLEPFERDHACVVGAYRVPKKQK 311
>tr|B7VCB9|B7VCB9_NICBE Fibrillarin 2 OS=Nicotiana benthamiana GN=fib2 PE=2 SV=1 Length = 314
Score = 106 bits (265), Expect = 1e-21 Identities = 51/56 (91%), Positives = 52/56 (92%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ EQFKP EQVTLEPFERDHACVVG YRVP KQK Sbjct: 256 KANCIDSTVPAEAVFAQEVKKLQAEQFKPMEQVTLEPFERDHACVVGAYRVPKKQK 311
>tr|A9CSG4|A9CSG4_9MAGN Putative fibrillarin (Fragment) OS=Vitis hybrid cultivar GN=TamFIB-like PE=2 SV=1 Length = 204
Score = 105 bits (262), Expect = 3e-21 Identities = 49/56 (87%), Positives = 53/56 (94%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ + FKP+EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 146 KANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQK 201
>tr|A7QG46|A7QG46_VITVI Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037695001 PE=4 SV=1 Length = 245
Score = 105 bits (262), Expect = 3e-21 Identities = 49/56 (87%), Positives = 53/56 (94%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ + FKP+EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 187 KANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQK 242
>tr|A5AUT4|A5AUT4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004622 PE=4 SV=1 Length = 121
Score = 105 bits (262), Expect = 3e-21 Identities = 49/56 (87%), Positives = 53/56 (94%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFAQEVKKLQ + FKP+EQVTLEPFERDHACVVGGYR+P KQK Sbjct: 63 KANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQK 118
>tr|A9TSL7|A9TSL7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60980 PE=4 SV=1 Length = 247
Score = 104 bits (259), Expect = 6e-21 Identities = 50/56 (89%), Positives = 51/56 (91%) Frame = +1
Query: 442 QANCIDSTVPAEAVFAQEVKKLQKEQFKPAEQVTLEPFERDHACVVGGYRVPXKQK 609 +ANCIDSTVPAEAVFA EVKKLQKEQFKPAEQVTLEPFERDHACVVG YR P K K Sbjct: 187 KANCIDSTVPAEAVFASEVKKLQKEQFKPAEQVTLEPFERDHACVVGTYRAPKKAK 242
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