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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949288
Clone id TST38A01NGRL0005_J11
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_J11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
ATCGCCTATGTCCGTGCAACAAGTACCGGATGGCTAAAATAACACAACAACAGGGCAGAT
GCTGGCCTCTCTGTGCGTTCCCCTCCGCGCAGCTTCGCGTCACTCGCGTGCATGGCGGCG
TAATCGATGTCTTGTGTCGCTGAACAAGACGTCTGACTCATCACTCGTTACTGAAGTAAG
GATACCCCTCCGGCTCTAGACGCTGCTTTCGTCATAAGAAAATTGTGACACTGTCCTGGC
CTTGGTTGTGGGGTTGCTCCCGCATACACGAGATCCGGCTCAGCGAGGCTTGTCTGATTT
TTCAGGCTGACTTGGGACTGTACCTGAGGTCGGCCCAGGTATGAAACGGTACATAGGCCT
TGTTATGGCGATTGTGCTGTCATCAGCTTCCGCTTGCGCACATGGATCCCTAAAATAATG
TTTCAACATGAATGTCCCCGGTTGGGAAGGTGA
■■Homology search results ■■ -
sp_hit_id Q72L62
Definition sp|Q72L62|TDH_THET2 L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Align length 48
Score (bit) 30.0
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949288|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_J11, 5'
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q72L62|TDH_THET2 L-threonine 3-dehydrogenase OS=Thermus therm...    30   4.8  
sp|Q2I327|DMTA2_XIPMA Doublesex- and mab-3-related transcription...    30   4.8  
sp|Q5SKS4|TDH_THET8 L-threonine 3-dehydrogenase OS=Thermus therm...    29   8.2  

>sp|Q72L62|TDH_THET2 L-threonine 3-dehydrogenase OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=tdh PE=3 SV=1
          Length = 343

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 314 GTVPEVGPGMKR-----YIGLVMAIVLSSASACAHGSLK*CFNMNVPG 442
           G V  VGPG+KR     ++ L   +V  +  AC  G+   C N  + G
Sbjct: 67  GVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILG 114


>sp|Q2I327|DMTA2_XIPMA Doublesex- and mab-3-related transcription
           factor A2 OS=Xiphophorus maculatus GN=dmrta2 PE=2 SV=1
          Length = 449

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 395 KRKLMTAQSP*QGLCTVSYLGRPQVQSQVSLKNQTSLA--EPDLVYAGATPQPRPGQCH 225
           +R L +AQ P  G  T +   RP +   ++L N+++ +  +P+  + GA P   P   H
Sbjct: 317 ERMLQSAQQPPAGSATAATTTRPMLPGAMTLSNRSAFSPLQPNAPHFGADPGTYPLGTH 375


>sp|Q5SKS4|TDH_THET8 L-threonine 3-dehydrogenase OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tdh
           PE=1 SV=1
          Length = 343

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 314 GTVPEVGPGMKR-----YIGLVMAIVLSSASACAHGSLK*CFNMNVPG 442
           G V  VGPG++R     ++ L   IV  +  AC  G+   C N  + G
Sbjct: 67  GVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILG 114
tr_hit_id B3XZL7
Definition tr|B3XZL7|B3XZL7_9CONI Carboxy-terminal binding protein OS=Larix gmelinii
Align length 103
Score (bit) 61.2
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949288|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_J11, 5'
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3XZL7|B3XZL7_9CONI Carboxy-terminal binding protein OS=Larix...    61   2e-08
tr|A9TKR3|A9TKR3_PHYPA Predicted protein OS=Physcomitrella paten...    58   2e-07
tr|A9U1D5|A9U1D5_PHYPA Predicted protein (Fragment) OS=Physcomit...    58   3e-07
tr|A9S837|A9S837_PHYPA Predicted protein OS=Physcomitrella paten...    53   7e-06
tr|A7PZI9|A7PZI9_VITVI Chromosome chr15 scaffold_40, whole genom...    51   3e-05
tr|A5BY67|A5BY67_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana G...    50   7e-05
tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis...    50   7e-05
tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putativ...    50   7e-05
tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus OS=Arab...    50   7e-05
tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana GN=...    50   7e-05
tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment) OS=Arab...    50   7e-05
tr|Q84JM5|Q84JM5_IPONI Angustifolia OS=Ipomoea nil GN=IAN PE=2 SV=1    49   1e-04
tr|Q7XAP1|Q7XAP1_MARPO C-terminal binding protein OS=Marchantia ...    48   2e-04
tr|Q7XAP0|Q7XAP0_MARPO C-terminal binding protein OS=Marchantia ...    48   2e-04
tr|Q7XAN9|Q7XAN9_MARPO Short C-terminal binding protein OS=March...    48   2e-04
tr|A9RYF3|A9RYF3_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   5e-04
tr|B8BI01|B8BI01_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q8S5W4|Q8S5W4_ORYSJ Putative C-terminal binding protein OS=Or...    44   0.004
tr|B8AMF2|B8AMF2_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A3ADP2|A3ADP2_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|Q8LN38|Q8LN38_ORYSJ Os10g0533000 protein OS=Oryza sativa subs...    42   0.015
tr|B6U1W6|B6U1W6_MAIZE Angustifolia OS=Zea mays PE=2 SV=1              42   0.015
tr|A3C6S4|A3C6S4_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.015
tr|A6RW02|A6RW02_BOTFB Predicted protein OS=Botryotinia fuckelia...    35   1.4  
tr|Q4RNP7|Q4RNP7_TETNG Chromosome 2 SCAF15010, whole genome shot...    33   5.4  
tr|Q82RM4|Q82RM4_STRAW Putative IS5 family IS1647-like transposa...    33   5.5  
tr|B5HUP0|B5HUP0_9ACTO Putative uncharacterized protein OS=Strep...    33   7.1  
tr|A8TYR3|A8TYR3_9PROT Putative uncharacterized protein OS=alpha...    33   7.1  

>tr|B3XZL7|B3XZL7_9CONI Carboxy-terminal binding protein OS=Larix
           gmelinii GN=LgAN PE=2 SV=1
          Length = 646

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 40/103 (38%), Positives = 61/103 (59%)
 Frame = +2

Query: 128 CLVSLNKTSDSSLVTEVRIPLRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG 307
           CL S +K  DS+L +++ + L       + E  DTV+AL++GL+ HT   +++G S  SG
Sbjct: 90  CLGSSDKAVDSALASDLGLQLLHVDTARAEEVADTVMALLLGLIRHTHLLSKQGFSS-SG 148

Query: 308 *LGTVPEVGPGMKRYIGLVMAIVLSSASACAHGSLK*CFNMNV 436
            LG++  +  GM+R  GLV+ I+  SASACA  +    F M V
Sbjct: 149 WLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKMRV 191


>tr|A9TKR3|A9TKR3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94037 PE=4 SV=1
          Length = 605

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 45/143 (31%), Positives = 67/143 (46%)
 Frame = +2

Query: 8   MSVQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIP 187
           + + QV +G   T    ++ SL                  CL S++K  D++L  E+ + 
Sbjct: 30  VGLTQVTEGRIETAIAVLMTSLANLPGAAQKRLQPWQLILCLSSVDKAVDAALAAEMGLQ 89

Query: 188 LRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVM 367
           +         E  DT LAL++GLL HT   A++G +  +G LG    V  GM R  GLV+
Sbjct: 90  VIHVDSKRVEEVADTTLALMLGLLRHTHVLARKGHASAAGWLGASKSVCTGMHRCKGLVL 149

Query: 368 AIVLSSASACAHGSLK*CFNMNV 436
            I+ +SA+ACA       F M V
Sbjct: 150 GIIGASATACAVAVRSLAFRMLV 172


>tr|A9U1D5|A9U1D5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_30727 PE=4 SV=1
          Length = 622

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 41/131 (31%), Positives = 64/131 (48%)
 Frame = +2

Query: 8   MSVQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIP 187
           + + Q+ +G   T    +++SL                  CL S++K  D++L +E+ + 
Sbjct: 28  VGLTQLTEGKIETAVAVLISSLAYLPSAAQRRLQPWQLVLCLSSVDKAVDTALASELGLQ 87

Query: 188 LRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVM 367
           L         E  DT LAL++GLL HT   A++G    +G LG    V  GM R  GLV+
Sbjct: 88  LIHVDSKRVEEVADTTLALMLGLLRHTHVLARKGHDSAAGWLGATKSVCTGMHRCKGLVV 147

Query: 368 AIVLSSASACA 400
            I+ +S +ACA
Sbjct: 148 GIIGASITACA 158


>tr|A9S837|A9S837_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125702 PE=4 SV=1
          Length = 428

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 39/102 (38%), Positives = 55/102 (53%)
 Frame = +2

Query: 131 LVSLNKTSDSSLVTEVRIPLRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG* 310
           L  ++K  DS+L  E+ + L         E  DTVLAL++GLL HT   A  G +  +G 
Sbjct: 108 LSCMDKMVDSALANELGLQLLHVDSAREEEIADTVLALLLGLLRHTHVLASHGYAS-AGW 166

Query: 311 LGTVPEVGPGMKRYIGLVMAIVLSSASACAHGSLK*CFNMNV 436
           LGT+  +  GM+R  G+V+ IV ++A A A  S    F M V
Sbjct: 167 LGTIHSLCKGMRRSKGMVIGIVGATAPARAVASRSLAFRMKV 208


>tr|A7PZI9|A7PZI9_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026896001
           PE=4 SV=1
          Length = 644

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 40/103 (38%), Positives = 58/103 (56%)
 Frame = +2

Query: 128 CLVSLNKTSDSSLVTEVRIPLRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG 307
           CL S +++ DS+L  ++ + L       + E  DTV+AL +GLL  T   ++  LS  SG
Sbjct: 92  CLGSSDRSVDSALAADLGLRLVHVDTSRAEEVADTVMALFLGLLRRTHLLSRHTLSA-SG 150

Query: 308 *LGTVPEVGPGMKRYIGLVMAIVLSSASACAHGSLK*CFNMNV 436
            LG+V  +  GM+R  GLV+ IV  SASA +  +    F MNV
Sbjct: 151 WLGSVQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAFKMNV 193


>tr|A5BY67|A5BY67_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022824 PE=4 SV=1
          Length = 316

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 40/103 (38%), Positives = 58/103 (56%)
 Frame = +2

Query: 128 CLVSLNKTSDSSLVTEVRIPLRL*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG 307
           CL S +++ DS+L  ++ + L       + E  DTV+AL +GLL  T   ++  LS  SG
Sbjct: 92  CLGSSDRSVDSALAADLGLRLVHVDTSRAEEVADTVMALFLGLLRRTHLLSRHTLSA-SG 150

Query: 308 *LGTVPEVGPGMKRYIGLVMAIVLSSASACAHGSLK*CFNMNV 436
            LG+V  +  GM+R  GLV+ IV  SASA +  +    F MNV
Sbjct: 151 WLGSVQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAFKMNV 193


>tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana
           GN=F22L4.6 PE=4 SV=1
          Length = 1284

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 43/141 (30%), Positives = 67/141 (47%)
 Frame = +2

Query: 14  VQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIPLR 193
           + ++ DG   + T  +L SL                  CL S ++  DS+L  ++ + L 
Sbjct: 380 LSRIADGKIESATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLV 439

Query: 194 L*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVMAI 373
                 + E  DTV+AL++GLL  T   ++  LS  SG LG++  +  GM+R  G+V+ I
Sbjct: 440 HVDTSRAEEIADTVMALILGLLRRTHLLSRHALSA-SGWLGSLQPLCRGMRRCRGMVLGI 498

Query: 374 VLSSASACAHGSLK*CFNMNV 436
           V  S SA    S    F M+V
Sbjct: 499 VGRSVSARYLASRSLAFKMSV 519


>tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis
           thaliana GN=ANGUSTIFOLIA PE=2 SV=1
          Length = 636

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 43/141 (30%), Positives = 67/141 (47%)
 Frame = +2

Query: 14  VQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIPLR 193
           + ++ DG   + T  +L SL                  CL S ++  DS+L  ++ + L 
Sbjct: 50  LSRIADGKIESATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLV 109

Query: 194 L*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVMAI 373
                 + E  DTV+AL++GLL  T   ++  LS  SG LG++  +  GM+R  G+V+ I
Sbjct: 110 HVDTSRAEEIADTVMALILGLLRRTHLLSRHALSA-SGWLGSLQPLCRGMRRCRGMVLGI 168

Query: 374 VLSSASACAHGSLK*CFNMNV 436
           V  S SA    S    F M+V
Sbjct: 169 VGRSVSARYLASRSLAFKMSV 189


>tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At1g01510) OS=Arabidopsis
           thaliana GN=At1g01510 PE=2 SV=1
          Length = 636

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 43/141 (30%), Positives = 67/141 (47%)
 Frame = +2

Query: 14  VQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIPLR 193
           + ++ DG   + T  +L SL                  CL S ++  DS+L  ++ + L 
Sbjct: 50  LSRIADGKIESATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLV 109

Query: 194 L*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVMAI 373
                 + E  DTV+AL++GLL  T   ++  LS  SG LG++  +  GM+R  G+V+ I
Sbjct: 110 HVDTSRAEEIADTVMALILGLLRRTHLLSRHALSA-SGWLGSLQPLCRGMRRCRGMVLGI 168

Query: 374 VLSSASACAHGSLK*CFNMNV 436
           V  S SA    S    F M+V
Sbjct: 169 VGRSVSARYLASRSLAFKMSV 189


>tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 627

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 43/141 (30%), Positives = 67/141 (47%)
 Frame = +2

Query: 14  VQQVPDG*NNTTTGQMLASLCVPLXXXXXXXXXXXXXXCLVSLNKTSDSSLVTEVRIPLR 193
           + ++ DG   + T  +L SL                  CL S ++  DS+L  ++ + L 
Sbjct: 41  LSRIADGKIESATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLV 100

Query: 194 L*TLLSS*ENCDTVLALVVGLLPHTRDPAQRGLSDFSG*LGTVPEVGPGMKRYIGLVMAI 373
                 + E  DTV+AL++GLL  T   ++  LS  SG LG++  +  GM+R  G+V+ I
Sbjct: 101 HVDTSRAEEIADTVMALILGLLRRTHLLSRHALSA-SGWLGSLQPLCRGMRRCRGMVLGI 159

Query: 374 VLSSASACAHGSLK*CFNMNV 436
           V  S SA    S    F M+V
Sbjct: 160 VGRSVSARYLASRSLAFKMSV 180