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NBDC - LSDB Archive
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DK949311
Clone id TST38A01NGRL0005_K10
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_K10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGCCCGAGAGGGAGAAGCTCGTGTTTGTTTGCAGAAATGGCTGCCATGCAGGCGACATTG
GGCGTTTCCTGCCCTTCTTCGTCTCTATGCAAGTCGTCTTTCTTGGGGAGCGCCTCTCGT
CTTTCTCGGGTGGCCTCTGCTATTGCCCCTTCCCCTGTCCGTGCCTTCAAGGTCGAGGCA
AAGAAAGGCGAATGGCTTCCCGGTCTGGCATCCCCTGCTTACCTAGACGGAAACCTTGCT
GGTGACAATGGCTTCGACCCCCTTGGCTTGGCTGAGGATCCTGCCAACCTTAAATGGTAT
GTGCAAGCAGAGCTTCAAAATGGAAGATGGGCAATGCTTGGAGTAGCTGGCATGTTGATC
CCCGACCTCTTGACAAAGATTGGTATCATCAATGTTCCTGCATGGTATGATGCGGGCAAG
GTCGAGTACTTCGCCCCCGCCTCCACTCTCTTTGTGATCGAATTCATCTTGTTCCACTAT
GTGGAGGTGAGAAGATGGCAAGACATCAAGTACCCTGGCAGTGTGAATGCCGATCCGTTC
AACCCTAAGCTTACTCTGCCCCCTGGCGAGGTTGGATACCCTGGAGGCATCTTCAACCCC
TTCAATTTCCCTACTTCTCTGGAATACAAGGAGAAGGAGATTGCAAATGGCCGGCTTGCT
ATGCTGGCCTTC
■■Homology search results ■■ -
sp_hit_id P27521
Definition sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana
Align length 170
Score (bit) 290.0
E-value 6.0e-78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949311|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_K10, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...   290   6e-78
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...   286   5e-77
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...   219   8e-57
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...   189   1e-47
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...   184   4e-46
sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl...   117   4e-26
sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...   112   2e-24
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...   105   2e-22
sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...   103   6e-22
sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...   100   9e-21
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...   100   9e-21
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...    96   1e-19
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    84   5e-16
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast...    77   8e-14
sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII typ...    76   1e-13
sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII typ...    76   1e-13
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...    76   2e-13
sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII typ...    76   2e-13
sp|P08976|LH18_EUGGR Light-harvesting complex I LH38 proteins (F...    75   2e-13
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...    73   1e-12
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...    73   1e-12
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...    73   2e-12
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...    73   2e-12
sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloropl...    72   3e-12
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas...    71   6e-12
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...    71   6e-12
sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    71   6e-12
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...    71   6e-12
sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty...    70   8e-12
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl...    70   8e-12

>sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4,
           chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
          Length = 251

 Score =  290 bits (741), Expect = 6e-78
 Identities = 137/170 (80%), Positives = 150/170 (88%)
 Frame = +1

Query: 163 AFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLG 342
           +FKVEAKKGEWLPGLASP YL G+LAGDNGFDPLGLAEDP NLKW+VQAEL NGRWAMLG
Sbjct: 47  SFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLG 106

Query: 343 VAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGS 522
           VAGML+P++ TKIGIINVP WYDAGK +YFA +STLFVIEFILFHYVE+RRWQDIK PGS
Sbjct: 107 VAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 166

Query: 523 VNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           VN DP   + +LP GEVGYPGGIFNP NF  + E KEKE+ANGRLAMLAF
Sbjct: 167 VNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAF 216


>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4,
           chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
          Length = 252

 Score =  286 bits (733), Expect = 5e-77
 Identities = 137/174 (78%), Positives = 149/174 (85%)
 Frame = +1

Query: 151 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 330
           SP  +FKVEAKKGEWLPGLASP YL G+L GDNGFDPLGLAEDP NL+W+VQAEL NGRW
Sbjct: 42  SPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRW 101

Query: 331 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 510
           AMLGVAGML+P++ T IGIINVP WY AGK EYFA +STLFVIEFIL HYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIK 161

Query: 511 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
            PGSVN DP   + +LP GEVGYPGGIFNP NF  +LE KEKEIANGRLAMLAF
Sbjct: 162 NPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAF 215


>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20,
           chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20
           PE=1 SV=1
          Length = 231

 Score =  219 bits (559), Expect = 8e-57
 Identities = 115/184 (62%), Positives = 133/184 (72%), Gaps = 1/184 (0%)
 Frame = +1

Query: 124 SRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYV 303
           S  AS    S  R   V+AK G WLPGL SPAYLDG+L GDNGFDPL LAEDP +L+W+V
Sbjct: 14  SPAASGSPRSTRRDVAVQAK-GSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFV 72

Query: 304 QAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYD-AGKVEYFAPASTLFVIEFILFHY 480
           QA++ NGRWAMLGVAGMLIP++LTK G++N P W    GK  YFA +ST   +  +   Y
Sbjct: 73  QADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTY 131

Query: 481 VEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLA 660
           VE+RRWQDIK PGSVN DP     +LPP E GYPG +FNP NF   LE KEKE+ANGRLA
Sbjct: 132 VEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNF-APLENKEKELANGRLA 190

Query: 661 MLAF 672
           MLAF
Sbjct: 191 MLAF 194


>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
           OS=Petunia hybrida PE=2 SV=1
          Length = 270

 Score =  189 bits (480), Expect = 1e-47
 Identities = 100/192 (52%), Positives = 122/192 (63%), Gaps = 11/192 (5%)
 Frame = +1

Query: 127 RVASAIAPSPVRAFKVEAKKGE-----WLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL 291
           RV+  IAP   R+  V A   +     W PG   P +LDG+L GD GFDPLGL  DP +L
Sbjct: 41  RVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL 100

Query: 292 KWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFIL 471
           KW  QAEL + RWAMLG AG+ IP+ LTKIG++N P+WY AG+ EYF   +TLFVIE +L
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVL 160

Query: 472 FHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGI-FNPFNF----PTSL-EYKE 633
             + E RRW DI  PG VN DP  P   L   +VGYPGG+ F+P  +    P  + E + 
Sbjct: 161 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRT 220

Query: 634 KEIANGRLAMLA 669
           KEI NGRLAMLA
Sbjct: 221 KEIKNGRLAMLA 232



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 DGNLAGDNGFDPLGLAE-DPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIIN 393
           D    G   FDPLG     PA +K     E++NGR AML V G     + T  G I+
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 249


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score =  184 bits (467), Expect = 4e-46
 Identities = 92/165 (55%), Positives = 113/165 (68%), Gaps = 6/165 (3%)
 Frame = +1

Query: 193 WLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLL 372
           W PG   P +LDG+L GD GFDPLGLA DP +L+W  QAEL + RWAMLG AG+ IP+LL
Sbjct: 68  WFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELL 127

Query: 373 TKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKL 552
           TKIGI+N P+WY AG+ EYF   +TLF++E +L  + E RRW DI  PG VN DP  P  
Sbjct: 128 TKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNN 187

Query: 553 TLPPGEVGYPGGI-FNPFNF----PTSL-EYKEKEIANGRLAMLA 669
            L   +VGYPGG+ F+P  +    P  + E + KEI NGRLAMLA
Sbjct: 188 KLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 DGNLAGDNGFDPLGLAE-DPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIIN 393
           D    G   FDPLG     PA +K     E++NGR AML V G     + T  G I+
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 249


>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8,
           chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
          Length = 273

 Score =  117 bits (294), Expect = 4e-26
 Identities = 86/206 (41%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
 Frame = +1

Query: 118 RLSRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL-- 291
           + S V  A +  PV   K  A +  W     S +YLDG L GD GFDPLGL+ DP     
Sbjct: 34  KASFVVRAASTPPV---KQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGG 89

Query: 292 ----KWYVQAELQNGRWAMLGVAGMLIPDLLTKIGII---NVPAWYD------AGKVEYF 432
               KW    E+ NGR+AMLG AG + P++L K G+I      AW+       AG   Y+
Sbjct: 90  FIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 149

Query: 433 APASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPF--NPKLTLPPGEVGYPGG-IFNPF 603
           A   TLFV+E  L  + E RR+QD   PGS+    F    K     G+  YPGG +FNP 
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPL 209

Query: 604 NF----PTSLEYKEKEIANGRLAMLA 669
            F     +  E K KEI NGRLAMLA
Sbjct: 210 GFGKDEKSMKELKLKEIKNGRLAMLA 235



 Score = 43.5 bits (101), Expect = 0.001
 Identities = 25/63 (39%), Positives = 34/63 (53%)
 Frame = +1

Query: 196 LPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLT 375
           L G   PAY  G L     F+PLG  +D  ++K     E++NGR AML + G  I  L+T
Sbjct: 192 LGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246

Query: 376 KIG 384
            +G
Sbjct: 247 GVG 249


>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic
           OS=Pisum sativum GN=lhca3 PE=1 SV=1
          Length = 275

 Score =  112 bits (280), Expect = 2e-24
 Identities = 83/202 (41%), Positives = 104/202 (51%), Gaps = 25/202 (12%)
 Frame = +1

Query: 139 AIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL------KWY 300
           A A  PV+   V+  +  W     S +YLDG+L GD GFDPLGL+ DP         +W 
Sbjct: 42  AAATPPVKQGGVD--RPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWL 98

Query: 301 VQAELQNGRWAMLGVAGMLIPDLLTKIGII---NVPAWYD------AGKVEYFAPASTLF 453
              E+ NGR+AMLG  G + P+ L K+G+I      AW+       AG   Y+A   TLF
Sbjct: 99  AYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLF 158

Query: 454 VIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVG-----YPGG-IFNPFNF-- 609
           V+E  L  + E RR+QD   PGS+    F   L L  G  G     YPGG  FNP  F  
Sbjct: 159 VLEMALMGFAEHRRFQDWAKPGSMGKQYF---LGLEKGFGGSGNPAYPGGPFFNPLGFGK 215

Query: 610 --PTSLEYKEKEIANGRLAMLA 669
              +  E K KE+ NGRLAMLA
Sbjct: 216 DEKSLKELKLKEVKNGRLAMLA 237



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +1

Query: 202 GLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKI 381
           G  +PAY  G       F+PLG  +D  +LK     E++NGR AML + G  I  L+T +
Sbjct: 196 GSGNPAYPGGPF-----FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 250

Query: 382 G 384
           G
Sbjct: 251 G 251


>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score =  105 bits (262), Expect = 2e-22
 Identities = 79/211 (37%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
 Frame = +1

Query: 124 SRVASAIAPSPVRAFKVEAKKGEWLPG------LASPAYLDGNLAGDNGFDPLGLAEDPA 285
           +RV  A  P         AKK  W+P       L  P +LDG+L GD GFDPLGL +DPA
Sbjct: 33  ARVGGAATPKRFTVLAAAAKKS-WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA 91

Query: 286 NLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAG-KVEYFAPAS--TLFV 456
            LKWY +AEL +GRWAM  V G+ +    + I       W++AG      AP S  TL  
Sbjct: 92  FLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLG 145

Query: 457 IEFILFHYVEVRRWQDIKYPGSVNADPFNP------KLTLPPGEVGYPGG-IFNPFNFPT 615
            + IL  +VE +RW D   P S + +   P            GE GYPGG  F+P     
Sbjct: 146 TQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAG 205

Query: 616 SL-------------EYKEKEIANGRLAMLA 669
           +L               K  EI + RLAMLA
Sbjct: 206 TLNNGVYVPDTEKLERLKVAEIKHARLAMLA 236


>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score =  103 bits (258), Expect = 6e-22
 Identities = 73/190 (38%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
 Frame = +1

Query: 178 AKKGEWLPGLAS------PAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAML 339
           A K  W+P +        P +LDG+L GD GFDPLGL +DPA LKWY +AEL +GRWAML
Sbjct: 55  APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAML 114

Query: 340 GVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPG 519
            V G+ +    T  GI    A  D G V  F+   TL   + +L  +VE +RW D   P 
Sbjct: 115 AVLGIFVGQAWT--GIPWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVDFFDPD 171

Query: 520 SVNADPFNP------KLTLPPGEVGYPGG-IFNPFNFPTSL-------------EYKEKE 639
           S + +   P        +   GE GYPGG  F+P +   ++               K  E
Sbjct: 172 SQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAE 231

Query: 640 IANGRLAMLA 669
           I + RLAMLA
Sbjct: 232 IKHARLAMLA 241


>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score =  100 bits (248), Expect = 9e-21
 Identities = 66/173 (38%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
 Frame = +1

Query: 190 EWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDL 369
           EW PG   PA+LDG+  GD GFDPLGLA  P N + + ++E+ + RWAML V G+L+P+ 
Sbjct: 47  EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 106

Query: 370 LTKIGIINVPAW--YDAGKVEY------FAPASTLFVIEFILFHYVEVRRWQDIKYPGSV 525
           L     +    W     G+  Y      +    T+  IEF+   + E +R        ++
Sbjct: 107 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TM 158

Query: 526 NADPFNPKLTLPPGEVGYPGGIFNPFNF---PTSL-EYKEKEIANGRLAMLAF 672
             DP   K         YPGG F+P  F   P    E K KEI NGRLAMLAF
Sbjct: 159 EKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAF 202



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 253 FDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLI 360
           FDPLG ++DPA  +     E++NGR AML   G  +
Sbjct: 172 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCV 207
tr_hit_id Q07489
Definition tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I OS=Pinus sylvestris
Align length 209
Score (bit) 301.0
E-value 2.0e-80
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949311|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_K10, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-har...   301   2e-80
tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of light-har...   300   7e-80
tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea...   298   3e-79
tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein ...   295   2e-78
tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medic...   294   4e-78
tr|A5AEI0|A5AEI0_VITVI Putative uncharacterized protein (Chromos...   293   9e-78
tr|B1PDK1|B1PDK1_CAPAN Chloroplast chlorophyll a/b binding prote...   291   3e-77
tr|Q7M1K8|Q7M1K8_SOLLC Chlorophyll a/b-binding protein (cab-12) ...   288   2e-76
tr|Q7XAC6|Q7XAC6_BETVU Chlorophyll a /b binding protein OS=Beta ...   288   2e-76
tr|A9PIX4|A9PIX4_POPJC Putative uncharacterized protein OS=Popul...   285   1e-75
tr|Q1H8L9|Q1H8L9_SOLTU Chlorophyll a/b binding protein OS=Solanu...   285   2e-75
tr|Q7M1K9|Q7M1K9_SOLLC Chlorophyll a/b-binding protein (cab-11) ...   283   7e-75
tr|B6SZR1|B6SZR1_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   282   1e-74
tr|B4FV94|B4FV94_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   280   8e-74
tr|B6TNZ8|B6TNZ8_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   277   4e-73
tr|B6TFT2|B6TFT2_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   276   1e-72
tr|B8LS59|B8LS59_BAMOL Photosystem I light-harvesting complex ty...   275   2e-72
tr|Q6YWJ7|Q6YWJ7_ORYSJ Os08g0435900 protein OS=Oryza sativa subs...   271   4e-71
tr|A2YVJ1|A2YVJ1_ORYSI Putative uncharacterized protein OS=Oryza...   271   4e-71
tr|Q9LKC7|Q9LKC7_HORVU Chlorophyll a/b-binding protein (Fragment...   269   1e-70
tr|Q40481|Q40481_TOBAC Light-harvesting chlorophyll a /b binding...   268   2e-70
tr|A2YVI8|A2YVI8_ORYSI Putative uncharacterized protein OS=Oryza...   267   4e-70
tr|Q9ZSU1|Q9ZSU1_ORYSA Chlorophyll a/b-binding protein presursor...   265   3e-69
tr|Q6SYB3|Q6SYB3_ORYSJ Chlorophyll a/b binding protein presusor ...   261   3e-68
tr|B6DYZ9|B6DYZ9_LIQST Chloroplast chlorophyll a-b binding prote...   229   2e-58
tr|B6DZ35|B6DZ35_9MAGN Chloroplast chlorophyll a-b binding prote...   228   3e-58
tr|B6DZ24|B6DZ24_9MAGN Chloroplast chlorophyll a-b binding prote...   227   5e-58
tr|B6DZ20|B6DZ20_9MAGN Chloroplast chlorophyll a-b binding prote...   227   5e-58
tr|B6DZ12|B6DZ12_9MAGN Chloroplast chlorophyll a-b binding prote...   227   5e-58
tr|B6DYZ6|B6DYZ6_LIQFO Chloroplast chlorophyll a-b binding prote...   227   5e-58

>tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of
           light-harvesting complex of photosystem I OS=Pinus
           sylvestris GN=Lhca4*1-1 PE=2 SV=1
          Length = 251

 Score =  301 bits (771), Expect = 2e-80
 Identities = 150/209 (71%), Positives = 167/209 (79%), Gaps = 1/209 (0%)
 Frame = +1

Query: 49  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 225
           QA LGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP+YL
Sbjct: 7   QAALGVSCPSVCRSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYL 65

Query: 226 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 405
           +G+L GDNGFDPLGLAEDP +LKWYVQAEL NGRWAMLGVAGMLIP++LT IG+INVP W
Sbjct: 66  NGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKW 125

Query: 406 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 585
           YDAGKVEYFA +STLFVIEFILFHYVE+RRWQDIKYPGSVN DP   + +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPG 185

Query: 586 GIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           GIFNP NF  S+E KEKE+ANGRLAMLAF
Sbjct: 186 GIFNPLNFSPSMEAKEKELANGRLAMLAF 214


>tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of
           light-harvesting complex of photosystem I (Fragment)
           OS=Pinus sylvestris GN=Lhca4*1-2 PE=2 SV=1
          Length = 244

 Score =  300 bits (767), Expect = 7e-80
 Identities = 143/182 (78%), Positives = 159/182 (87%)
 Frame = +1

Query: 127 RVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQ 306
           RV     P+P R+FKVEAK GEWLPGL+SP+YL+G+L GDNGFDPLGLAEDP +LKWYVQ
Sbjct: 27  RVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQ 85

Query: 307 AELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVE 486
           AEL NGRWAMLGVAGMLIP++LT IG+INVP WYDAGKVEYFA +STLFVIEFILFHYVE
Sbjct: 86  AELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVE 145

Query: 487 VRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAML 666
           +RRWQDIKYPGSVN DP   + +LPP EVGYPGGIFNP NF  S+E KEKE+ANGRLAML
Sbjct: 146 LRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEAKEKELANGRLAML 205

Query: 667 AF 672
           AF
Sbjct: 206 AF 207


>tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 251

 Score =  298 bits (762), Expect = 3e-79
 Identities = 149/209 (71%), Positives = 164/209 (78%), Gaps = 1/209 (0%)
 Frame = +1

Query: 49  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 225
           QATLGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP YL
Sbjct: 7   QATLGVSCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPTYL 65

Query: 226 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 405
           +G+L GDNGFDPLGLAEDP +LKWYVQAEL NGRWAMLGVAGMLIP++LT  G I+VP W
Sbjct: 66  NGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKW 125

Query: 406 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 585
           YDAGKVEYFA +STLFVIEFILFHYVE+RRWQDIKYPGSVN DP     +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPG 185

Query: 586 GIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           GIFNP NF  S+E KEKE+ANGRLAMLAF
Sbjct: 186 GIFNPLNFSPSMEAKEKELANGRLAMLAF 214


>tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein
           type 4 OS=Pinus pinaster PE=2 SV=1
          Length = 251

 Score =  295 bits (755), Expect = 2e-78
 Identities = 147/209 (70%), Positives = 163/209 (77%), Gaps = 1/209 (0%)
 Frame = +1

Query: 49  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 225
           QA LGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP+YL
Sbjct: 7   QAALGVSCPSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYL 65

Query: 226 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 405
           +G+L GDNG DPLGLAEDP +LKWYVQAEL NGRWAMLGVAGM IP++LT IG+INVP W
Sbjct: 66  NGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLINVPKW 125

Query: 406 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 585
           YDAGKVEYFA + TLFVIEFILFHYVE+RRWQDIKYPGSVN DP     +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIXKSYSLPPNEVGYPG 185

Query: 586 GIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           GIFNP NF  S+E KEKE+ANGRLAMLAF
Sbjct: 186 GIFNPLNFSPSMEAKEKELANGRLAMLAF 214


>tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 253

 Score =  294 bits (752), Expect = 4e-78
 Identities = 140/174 (80%), Positives = 151/174 (86%)
 Frame = +1

Query: 151 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 330
           SP  +FKVEAKKGEWLPGLASP YL G+L GDNGFDPLGLAEDP NLKW+VQAEL NGRW
Sbjct: 42  SPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRW 101

Query: 331 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 510
           AMLGVAGML+P++ T IGIINVP WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 511 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
            PGSVN DP   + +LP GEVGYPGGIFNP NF  +LE KEKEIANGRLAMLAF
Sbjct: 162 NPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAF 215


>tr|A5AEI0|A5AEI0_VITVI Putative uncharacterized protein (Chromosome
           chr17 scaffold_12, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00016319001 PE=4 SV=1
          Length = 252

 Score =  293 bits (749), Expect = 9e-78
 Identities = 138/174 (79%), Positives = 150/174 (86%)
 Frame = +1

Query: 151 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 330
           S  R+FKVEAKKGEWLPGL+SP+YLDG+L GDNGFDPLGLAEDP NLKWYVQAEL N RW
Sbjct: 42  SSYRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRW 101

Query: 331 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 510
           AMLGVAGML+P++ TKIGIIN P WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 511 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
            PGSVN DP     +LPP EVGYPGGIFNP NF  + E KEKE+ANGRLAMLAF
Sbjct: 162 NPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAF 215


>tr|B1PDK1|B1PDK1_CAPAN Chloroplast chlorophyll a/b binding protein
           OS=Capsicum annuum PE=2 SV=1
          Length = 250

 Score =  291 bits (745), Expect = 3e-77
 Identities = 138/185 (74%), Positives = 153/185 (82%)
 Frame = +1

Query: 118 RLSRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKW 297
           +L+R  S    +   +FKVEAKKGEWLPGLASPAYLDG+L GDNGFDPLGLAEDP NLKW
Sbjct: 29  KLNREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKW 88

Query: 298 YVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFH 477
           Y+QAEL NGRWAMLGVAGML+P++ T IGI+NVP WYDAGK EYFA +STLFVIEFILFH
Sbjct: 89  YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFASSSTLFVIEFILFH 148

Query: 478 YVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRL 657
           YVE+RRWQDIK PG VN DP     +LPP E GYPGGIFNP NF  + E KEKE+ANGRL
Sbjct: 149 YVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGIFNPLNFAATEEAKEKELANGRL 208

Query: 658 AMLAF 672
           AMLAF
Sbjct: 209 AMLAF 213


>tr|Q7M1K8|Q7M1K8_SOLLC Chlorophyll a/b-binding protein (cab-12)
           OS=Solanum lycopersicum PE=4 SV=1
          Length = 250

 Score =  288 bits (738), Expect = 2e-76
 Identities = 134/170 (78%), Positives = 149/170 (87%)
 Frame = +1

Query: 163 AFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLG 342
           +FKVEAKKGEWLPGL SP YL+G+LAGDNGFDPLGLAEDP NL+W+VQAEL NGRWAMLG
Sbjct: 45  SFKVEAKKGEWLPGLTSPTYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 104

Query: 343 VAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGS 522
           VAGML+P++ T IG++NVP WYDAGK +YFA +STLFVIEFILFHYVE+RRWQDIK PGS
Sbjct: 105 VAGMLLPEVFTSIGLLNVPKWYDAGKSDYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 164

Query: 523 VNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           VN DP     +LPP EVGYPGGIFNP NF  +LE KEKEIANGRLAMLAF
Sbjct: 165 VNQDPIFKSYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAF 214


>tr|Q7XAC6|Q7XAC6_BETVU Chlorophyll a /b binding protein OS=Beta
           vulgaris GN=cab11 PE=2 SV=1
          Length = 252

 Score =  288 bits (737), Expect = 2e-76
 Identities = 136/174 (78%), Positives = 150/174 (86%)
 Frame = +1

Query: 151 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 330
           S   + KVEAKKGEWLPGLASPAYL+G+L GDNGFDPL LAEDP NLKW+VQAEL NGRW
Sbjct: 42  SSTNSLKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRW 101

Query: 331 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 510
           AMLGVAGML+P++ T+IGIINVP WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 511 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
            PGSVN DP   + +LPP EVGYPGGIFNP NF  + E KEKE+ANGRLAMLAF
Sbjct: 162 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTAEAKEKELANGRLAMLAF 215


>tr|A9PIX4|A9PIX4_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 251

 Score =  285 bits (730), Expect = 1e-75
 Identities = 132/170 (77%), Positives = 148/170 (87%)
 Frame = +1

Query: 163 AFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLG 342
           +FKVEAKKGEWLPGL SP+YL+G+L GDNGFDPLGLAEDP NL+W+VQAEL NGRWAMLG
Sbjct: 45  SFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 104

Query: 343 VAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGS 522
           VAGML+P++ TKIGIIN P WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK PG 
Sbjct: 105 VAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGC 164

Query: 523 VNADPFNPKLTLPPGEVGYPGGIFNPFNFPTSLEYKEKEIANGRLAMLAF 672
           VN DP   + +LPP E GYPGGIFNP NF  ++E KEKE+ANGRLAMLAF
Sbjct: 165 VNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEAKEKELANGRLAMLAF 214