NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949334
Clone id TST38A01NGRL0005_L11
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_L11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGCAGGAGGAGGTGCAGTCTGGGCCAGCCCTCTTTGTTTTTCATGTGCAGAGCCAAGGAA
TGCGCCGCATGTTCCTCAGAGAAGGACAGGGCAAGTAGGTGCTGGAAGAGTTCAGCTTCA
CAGTCGCCCTTATGGAGCAAAATTGCATCTCTCCAGCCCCCCACGTGCAGCAAAATCCTC
GTTCTTTTCCATTTTTTGCAAAGCGGATCATATCTGTAGCTGCAGCACAGCGTCCGTAGC
ACCTTCCATCACTGCCCCCGAATTGCACATTGAGCATATACTGGACCAAATGAGCTTCGC
TCTTGGCCTTCATCTCTGCCCCCTCAATTATCACTTCACTGTCACAGGCAGACAAAAGTG
CTTTGGTTTGGAAGGTGATTGGAGACTGACGTGGTGTTTGGATGGGCGGTTTTATGAACA
ATTTATTGGAGAGGAAATTGTGTTTGAACATGGATATGATGGAAAACATAGTCCATGGCA
AGCTGATGCTGGTGGCTATGTTACTGACCTCCATCTTGACAACTTGGAGGCTTGTTTGTC
CGCCCTATGGGTCAGAACAGGCTATTGGCTCACAGGGGGAGGGCGATTAAACCTGCTCAT
AANANAGAAAGAAGTGTCTTCATTGAATGATGATGCATATACNAATAATGAGCTCTGGCT
ATCCATCTCACT
■■Homology search results ■■ -
sp_hit_id A6LGA2
Definition sp|A6LGA2|SYL_PARD8 Leucyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 85
Score (bit) 34.3
E-value 0.61
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949334|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L11, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LGA2|SYL_PARD8 Leucyl-tRNA synthetase OS=Parabacteroides di...    34   0.61 
sp|A4RHU9|DCL2_MAGGR Dicer-like protein 2 OS=Magnaporthe grisea ...    33   1.4  
sp|Q5RDL3|SGIP1_PONAB SH3-containing GRB2-like protein 3-interac...    33   1.8  
sp|Q9BQI5|SGIP1_HUMAN SH3-containing GRB2-like protein 3-interac...    32   2.3  
sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptid...    32   3.0  
sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptid...    32   3.0  
sp|Q6IZA3|SGIP1_PSAOB SH3-containing GRB2-like protein 3-interac...    32   3.0  
sp|Q7W0E5|GCST_BORPE Aminomethyltransferase OS=Bordetella pertus...    32   4.0  
sp|Q7WP31|GCST_BORBR Aminomethyltransferase OS=Bordetella bronch...    32   4.0  
sp|Q8A329|SYL_BACTN Leucyl-tRNA synthetase OS=Bacteroides thetai...    31   6.8  
sp|Q081N5|SYD_SHEFN Aspartyl-tRNA synthetase OS=Shewanella frigi...    31   6.8  
sp|Q2L1K6|SYD_BORA1 Aspartyl-tRNA synthetase OS=Bordetella avium...    30   8.8  
sp|Q8VD37|SGIP1_MOUSE SH3-containing GRB2-like protein 3-interac...    30   8.8  
sp|Q7W1C6|GCST_BORPA Aminomethyltransferase OS=Bordetella parape...    30   8.8  

>sp|A6LGA2|SYL_PARD8 Leucyl-tRNA synthetase OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=leuS PE=3 SV=1
          Length = 946

 Score = 34.3 bits (77), Expect = 0.61
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -3

Query: 475 WTMFSIISMFKHNFLSNKLFIKPPIQTPRQSPITFQTKALLSACDSEVIIEGAEMKAKSE 296
           WT ++ I MF   + +++   +P I    Q+  T  T+ L  AC  E+     E KAKS+
Sbjct: 134 WTQWAFIRMFNSYYCNDEKQARP-ISELIQAFETSGTEGLNVACGEELSFTAEEWKAKSD 192

Query: 295 AHLVQYMLNVQFGGSDGRCYGRCAA 221
               + +LN +           CAA
Sbjct: 193 KEKQEILLNYRIAYRGETMVNWCAA 217


>sp|A4RHU9|DCL2_MAGGR Dicer-like protein 2 OS=Magnaporthe grisea
            GN=DCL2 PE=3 SV=2
          Length = 1485

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 374  GDW-RLTWCLDGRFYEQFIGEEIVFEHGYDGKHSPWQADAGGYVTDLHLDNLEACLSALW 550
            GDW R     + R  E   G     EHG   +  PW   A   ++ +H D LEA + A+W
Sbjct: 1298 GDWVRDQQLAEERHAEMAPGIRDALEHG---QRYPWDLLARLRISKVHSDVLEAVIGAVW 1354

Query: 551  VRTG 562
            V +G
Sbjct: 1355 VDSG 1358


>sp|Q5RDL3|SGIP1_PONAB SH3-containing GRB2-like protein
           3-interacting protein 1 OS=Pongo abelii GN=SGIP1 PE=2
           SV=1
          Length = 804

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +2

Query: 23  ASPL--CFSCAEPRNAPHVPQRRT---GQVGAGRVQLHSRPYGAKLHLSSPPRAAKSSFF 187
           A+PL  C S   P   P  P R     G+ G G V   SRP+   +H SSPP  A     
Sbjct: 423 ATPLLPCSSTTPPPPPPRPPSRPKLPPGKPGVGDV---SRPFSPPIHSSSPPPIAP---- 475

Query: 188 SIFCKADHICSCSTASVAPSITAPELHIE 274
               +A+   S S+ +   + T P +  E
Sbjct: 476 --LARAESTSSISSTNSLSAATTPTVENE 502


>sp|Q9BQI5|SGIP1_HUMAN SH3-containing GRB2-like protein
           3-interacting protein 1 OS=Homo sapiens GN=SGIP1 PE=1
           SV=2
          Length = 828

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +2

Query: 23  ASPL--CFSCAEPRNAPHVPQRRT---GQVGAGRVQLHSRPYGAKLHLSSPPRAAKSSFF 187
           A+PL  C S   P   P  P R     G+ G G V   SRP+   +H SSPP  A     
Sbjct: 447 ATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDV---SRPFSPPIHSSSPPPIAP---- 499

Query: 188 SIFCKADHICSCSTASVAPSITAPELHIE 274
               +A+   S S+ +   + T P +  E
Sbjct: 500 --LARAESTSSISSTNSLSAATTPTVENE 526


>sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2
           OS=Pongo abelii GN=GTF3C2 PE=2 SV=1
          Length = 911

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +2

Query: 11  GAVWASPLCFSCA-----EPRNAPHVPQRRTGQVGA----GRVQLHSRPYGAKLHLSSPP 163
           G +W    C S A      PR AP +P  R G +      G+V L S P+   L    PP
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAPLLP--RLGLLALACSDGKVLLFSLPHPEALLAQQPP 525

Query: 164 RAAKSSFFSIFCKA 205
            A K + + + C A
Sbjct: 526 DAVKPAIYKVQCVA 539


>sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2
           OS=Homo sapiens GN=GTF3C2 PE=1 SV=2
          Length = 911

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +2

Query: 11  GAVWASPLCFSCA-----EPRNAPHVPQRRTGQVGA----GRVQLHSRPYGAKLHLSSPP 163
           G +W    C S A      PR AP +P  R G +      G+V L S P+   L    PP
Sbjct: 468 GCIWDLKFCPSGAWELPGTPRKAPLLP--RLGLLALACSDGKVLLFSLPHPEALLAQQPP 525

Query: 164 RAAKSSFFSIFCKA 205
            A K + + + C A
Sbjct: 526 DAVKPAIYKVQCVA 539


>sp|Q6IZA3|SGIP1_PSAOB SH3-containing GRB2-like protein
           3-interacting protein 1 OS=Psammomys obesus GN=SGIP1
           PE=1 SV=1
          Length = 827

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 23  ASPLC-FSCAEPRNAPHVPQRRT----GQVGAGRVQLHSRPYGAKLHLSSPPRAAKSSFF 187
           A+PL   SC+ P   P  P  R     G+ G G V   SRP+   +H SSPP  A     
Sbjct: 446 ATPLVPCSCSTPPPPPPRPPSRPKLPPGKPGVGDV---SRPFSPPIHSSSPPPIAP---- 498

Query: 188 SIFCKADHICSCSTASVAPSITAPELHIE 274
               +A+   S S+ +   + T P +  E
Sbjct: 499 --LARAESTSSISSTNSLSAATTPTVENE 525


>sp|Q7W0E5|GCST_BORPE Aminomethyltransferase OS=Bordetella pertussis
           GN=gcvT PE=3 SV=1
          Length = 366

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 286 VQYMLNVQFGGSDGRCYGRCAAATDMIRFAKNGKERGFC 170
           V +MLNV  GG+D   + R   A D+ R A  GK    C
Sbjct: 52  VSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSC 90


>sp|Q7WP31|GCST_BORBR Aminomethyltransferase OS=Bordetella
           bronchiseptica GN=gcvT PE=3 SV=1
          Length = 366

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 286 VQYMLNVQFGGSDGRCYGRCAAATDMIRFAKNGKERGFC 170
           V +MLNV  GG+D   + R   A D+ R A  GK    C
Sbjct: 52  VSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSC 90


>sp|Q8A329|SYL_BACTN Leucyl-tRNA synthetase OS=Bacteroides
           thetaiotaomicron GN=leuS PE=3 SV=1
          Length = 944

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 475 WTMFSIISMFKHNFLSNKLFIKPPIQTPRQSPITFQTKALLSACDSEVIIEGAEMKAKSE 296
           WT ++   MF   + +++   +P IQ    +   +  + L +AC  E+     E KAKSE
Sbjct: 134 WTQWAFQKMFNSYYCNDEQQARP-IQELIDAFAIYGNEGLNAACSEELSFTAKEWKAKSE 192

Query: 295 AHLVQYMLN 269
               + ++N
Sbjct: 193 KEQQEILMN 201
tr_hit_id A9RIF5
Definition tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 107
Score (bit) 81.6
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949334|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L11, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella paten...    82   4e-14
tr|Q01AJ1|Q01AJ1_OSTTA Chromosome 04 contig 1, DNA sequence OS=O...    48   6e-04
tr|A9U3S4|A9U3S4_PHYPA Methionine aminopeptidase OS=Physcomitrel...    37   1.5  
tr|A9TEX7|A9TEX7_PHYPA Methionine aminopeptidase OS=Physcomitrel...    37   1.5  
tr|B8M534|B8M534_9EURO Glutamine synthetase, putative OS=Talarom...    36   2.5  
tr|A4AW37|A4AW37_9FLAO Ferrodoxin oxidoreductase beta subunit OS...    35   4.3  
tr|A4S647|A4S647_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   5.6  
tr|A9RPA9|A9RPA9_PHYPA Predicted protein OS=Physcomitrella paten...    34   7.3  

>tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66553 PE=4 SV=1
          Length = 716

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
 Frame = +2

Query: 281 LDQMSFALGLHLCPLNYHFTVTGRQKCFGLEGDWRLTWCLD-GRFYEQFIGEEIVFEHGY 457
           ++++  A+G+        F ++G Q    +EG W+L W  D GRF+EQF G E+  E G+
Sbjct: 102 IERIRAAIGVDESFYGTAFWISGTQTLLAMEGKWQLNWRNDDGRFWEQFDGVEMTLECGF 161

Query: 458 DGK-HSPWQADAGGYVTDLHLDNLEACLSALWVRTGYWLTGGGRLNL 595
           DG+  + W   A G  + L LD+ E CL   W+RTGYW+T   R  +
Sbjct: 162 DGEGQNSWAVGAAGIRSTLELDDREVCLLGAWIRTGYWVTEAARTQI 208


>tr|Q01AJ1|Q01AJ1_OSTTA Chromosome 04 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot04g04090 PE=4 SV=1
          Length = 561

 Score = 47.8 bits (112), Expect = 6e-04
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +2

Query: 335 FTVTGRQKCFGLEGDWRLTWCL---DGRFYEQFIGEEIVFEHGYDG--KHSPWQADAGGY 499
           +T+ GR +  GL       WCL   D  F E+ +  E+ +  G     + S W+ D  GY
Sbjct: 61  YTLWGRGQHLGLPA----LWCLRTDDEAFVEETMNAELCYVSGRSRGREGSCWEVDFSGY 116

Query: 500 VTDLHLDNLEACLSALWVRTGYWLT 574
              L LD+ EA     W R+G+W T
Sbjct: 117 AQRLELDDAEAATLGAWTRSGFWAT 141


>tr|A9U3S4|A9U3S4_PHYPA Methionine aminopeptidase OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_63601 PE=3 SV=1
          Length = 409

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 20  WASPLCFSCAEPRN--APHVPQRRTGQVGAGRVQLHSRPYGAKLHLSSPPRAAKSSFFSI 193
           W  PL      PR     H+P+      G  + +++S  +   + + SP + AK      
Sbjct: 102 WTGPLRAYPISPRRFVPDHIPRPEWASTGRPQQEMNSE-WQNSVEIKSPAQIAK---LRE 157

Query: 194 FCKADH-ICSCSTASVAPSITAPELHIEHILDQMSFALGLHLCPLNYHF 337
            C+    +   +  ++ P +T  E  I+ I+ + + A G +  PLNYHF
Sbjct: 158 ACRVGREVLDVAARAIKPGVTTDE--IDRIVHEATIAAGGYPSPLNYHF 204


>tr|A9TEX7|A9TEX7_PHYPA Methionine aminopeptidase OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_108017 PE=3 SV=1
          Length = 409

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 20  WASPLCFSCAEPRN--APHVPQRRTGQVGAGRVQLHSRPYGAKLHLSSPPRAAKSSFFSI 193
           W  PL      PR     H+P+      G  + +++S  +   + + SP + AK      
Sbjct: 102 WTGPLRAYPISPRRFVPDHIPRPEWASTGRPQQEMNSE-WQNSVEIKSPAQIAK---LRE 157

Query: 194 FCKADH-ICSCSTASVAPSITAPELHIEHILDQMSFALGLHLCPLNYHF 337
            C+    +   +  ++ P +T  E  I+ I+ + + A G +  PLNYHF
Sbjct: 158 ACRVGREVLDVAARAIKPGVTTDE--IDRIVHEATIAAGGYPSPLNYHF 204


>tr|B8M534|B8M534_9EURO Glutamine synthetase, putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_029170 PE=4
           SV=1
          Length = 487

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = -3

Query: 316 EMKAKSEAHLVQYMLNVQFGG--SDGRCYGRCAAATDMIRFAKNGKERGFCCTWGAGEMQ 143
           ++ A++ A L+QY   V+  G  +DG   G+  +    +  A+ G   GFC      +M 
Sbjct: 8   DVTAENVATLLQYDTKVKLAGVDADGILRGKLVSKKKFLSIAEAGF--GFCSVIFGWDMH 65

Query: 142 ----FCSIRATVKLNSSSTYLPCPSLRNMRRIPW 53
               F  +  + K N     L  P L++ RRIPW
Sbjct: 66  DRTYFKELSISNKENGYRDLLAIPDLKSFRRIPW 99


>tr|A4AW37|A4AW37_9FLAO Ferrodoxin oxidoreductase beta subunit
           OS=Flavobacteriales bacterium HTCC2170 GN=FB2170_07969
           PE=4 SV=1
          Length = 336

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 318 APSIITSLSQADKSALVWKVIGD*RGVWMGG-FMNNLLERKLCLNMDMMENIVHGKLMLV 494
           AP+I + +  A+    VW + GD   + +GG    ++L R L LN+ +  N ++G  +  
Sbjct: 76  APAIASGVKLANPDLSVWVITGDGDSMAIGGNHFIHVLRRNLDLNVVLFNNEIYG--LTK 133

Query: 495 AMLLTSILTTWRLVCPPYGSEQAIGSQGE 581
                + L   +    PYG+ Q   S GE
Sbjct: 134 GQFSPTSLVGQKTKSSPYGNTQPPFSAGE 162


>tr|A4S647|A4S647_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_93571 PE=4 SV=1
          Length = 621

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
 Frame = +2

Query: 338 TVTGRQKCFGLEGDWRLTWCLDGRFYEQFI-------GEEIVFEHGYDGKHSPWQADAGG 496
           T  G     GL+G + LT    G  + + +        + +  E G D   + W AD  G
Sbjct: 35  TTRGTCTAHGLDGAFELTHDARGTTFVERVTLARGDDADALTTESGRDDDGTTWDADWYG 94

Query: 497 YVTDLHLDNLEACLSALWVRTGYW---LTGGGRL 589
                 LD   A     WVRT  W   L   GRL
Sbjct: 95  DRRATTLDGAHASAMMTWVRTNQWNDELAAAGRL 128


>tr|A9RPA9|A9RPA9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68718 PE=4 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -2

Query: 248 WKVLRTLCCSYRYDP-------LCKKWKRTRILLHVGGWRDAILLHKG 126
           W +LRTLC S  + P       L   +    +L HVGG RD I +H G
Sbjct: 50  WWLLRTLCLSLSFAPVITHMFSLLNHYHFRTMLSHVGGVRDKIAIHAG 97