DK949340 |
Clone id |
TST38A01NGRL0005_L18 |
Library |
TST38 |
Length |
697 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_L18. 5' end sequence. |
Accession |
DK949340 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1777Contig1 |
Sequence |
AAAAGGATTGCAGAAGGCATTCCACAGGGTTGGCATAAAAATAGTCTTCCTCTTTTGGCC TTTCGGATATCACCTTTCGTTCCCTTGGTGCACCCATAAGGACACTCTCTCCAGCAGCCA TGGAGGTTGGAAGTGTGGCATCGGCTATGGCTCTACGATTTACCAAACCCTCAGCTGGAC CTCGGCTACCCCTGCCATGCGTCAAGTCTCTTCGTCATCTGCCTCCCTCATCATCATCAT CACGCTCTCGAGCTGTCGTGAGAGCTTCTGAGAAGCCACAACGCACAGCATATGAGGAAG ACGAATACATGGAGACTCTTACAGAACTCTCCAGTGAAATCGAGGTATCAAAGGCTTCCT TGCTTACCCCTGAGCACAAAGCTTTGCTCGCTCTGTTGCTTTCACTAGGGTTCACACTTG GGTCTGCAGAGGTGGCCATGGCTTTGGGTCCTGAGGGCCCTCTTGTAGAAGAATTTTGGG ACAACATGAGGAGGTATGGCCTCTACTTCTTGACAGTTTTCACAGGAGGTCTTTACAGTC TTGTGGAGCCCATTTTTTCTCTTCTTCGCAATCCAGTAACGGCCATTTTCACGATTGCTT TCCTTTTTGGCTTCTTGTATCTCCTCTACTTAGTTCTGAACACCATGCTGGGCATCACCG CCTTCAATTATGATTATGCATAAGGCAATGCGTTGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1XDF7 |
Definition |
sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra yezoensis |
Align length |
44 |
Score (bit) |
39.7 |
E-value |
0.015 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949340|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_L18, 5' (682 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra ... 40 0.015 sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra ... 35 0.28 sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardi... 35 0.37 sp|P04412|EGFR_DROME Epidermal growth factor receptor OS=Drosoph... 33 1.8 sp|Q9YRV3|POLG_YEFVT Genome polyprotein OS=Yellow fever virus (s... 33 1.8 sp|P29837|POLG_LANVT Genome polyprotein OS=Langat virus (strain ... 33 1.8 sp|Q074N0|POLG_YEFVE Genome polyprotein OS=Yellow fever virus (i... 32 3.1 sp|O26685|PRIS_METTH Probable DNA primase small subunit OS=Metha... 31 5.3 sp|Q1X880|POLG_YEFVU Genome polyprotein OS=Yellow fever virus (i... 31 7.0 sp|Q1X881|POLG_YEFVN Genome polyprotein OS=Yellow fever virus (i... 31 7.0 sp|Q88IU7|LPXH_PSEPK UDP-2,3-diacylglucosamine hydrolase OS=Pseu... 30 9.1 sp|A5W461|LPXH_PSEP1 UDP-2,3-diacylglucosamine hydrolase OS=Pseu... 30 9.1 sp|Q98803|POLG_YEFVI Genome polyprotein OS=Yellow fever virus (i... 30 9.1 sp|Q89277|POLG_YEFVF Genome polyprotein OS=Yellow fever virus (s... 30 9.1 sp|Q6DV88|POLG_YEFVA Genome polyprotein OS=Yellow fever virus (s... 30 9.1 sp|P03314|POLG_YEFV1 Genome polyprotein OS=Yellow fever virus (s... 30 9.1 sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos tauru... 30 9.1
>sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra yezoensis GN=ycf33 PE=3 SV=1 Length = 67
Score = 39.7 bits (91), Expect = 0.015 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3
Query: 450 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 581 + +FWDN+ R+ + ++V G + ++ P F LL+ P+T+ F I Sbjct: 1 MNKFWDNVLRFPRFLVSVILGLILIIISPFFVLLKKPLTSFFFI 44
>sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra purpurea GN=ycf33 PE=3 SV=1 Length = 67
Score = 35.4 bits (80), Expect = 0.28 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = +3
Query: 450 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 581 + FW+N+ ++ + ++V G + +++ P F L R P T+ F I Sbjct: 1 MSRFWNNVVKFPRFLVSVILGLILTIISPFFVLFRKPSTSFFFI 44
>sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardia theta GN=ycf33 PE=3 SV=1 Length = 65
Score = 35.0 bits (79), Expect = 0.37 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = +3
Query: 459 FWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAI 572 FW+N+ RY +F++ G ++ + P+F+LL P +A+ Sbjct: 4 FWENLIRYPRFFISSTLGLVFIITGPLFNLLNKPKSAL 41
>sp|P04412|EGFR_DROME Epidermal growth factor receptor OS=Drosophila melanogaster GN=Egfr PE=1 SV=3 Length = 1426
Score = 32.7 bits (73), Expect = 1.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3
Query: 128 RCHTSNLHGCWRECPYGCTKGTK 60 +CH S HGCW E P C K +K Sbjct: 260 KCHESCTHGCWGEGPKNCQKFSK 282
>sp|Q9YRV3|POLG_YEFVT Genome polyprotein OS=Yellow fever virus (strain Trinidad/TRINID79A/1979) PE=3 SV=1 Length = 3411
Score = 32.7 bits (73), Expect = 1.8 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = +1
Query: 16 WHKNSLPLLAFRISPFVPL-----------VHP*GHSLQQPWRLEVWHRLWLYDLPNPQ 159 +HK + LL+ +S VP +H G + RLEVW+R+W+ + P+ Q Sbjct: 3277 FHKRDMRLLSLAVSSAVPTSWVPQGRTTWSIHGKGEWMTTEDRLEVWNRVWITNNPHMQ 3335
>sp|P29837|POLG_LANVT Genome polyprotein OS=Langat virus (strain TP21) PE=1 SV=2 Length = 3414
Score = 32.7 bits (73), Expect = 1.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Frame = +1
Query: 16 WHKNSLPLLAFRISPFVPL-----------VHP*GHSLQQPWRLEVWHRLWLYDLP 150 +H+ L L F I VP+ +H G + LEVW+R+W+YD P Sbjct: 3279 FHRRDLRTLGFAICSAVPVDWVPTGRTTWSIHASGAWMTTEDMLEVWNRVWIYDNP 3334
>sp|Q074N0|POLG_YEFVE Genome polyprotein OS=Yellow fever virus (isolate Ethiopia/Couma/1961) PE=1 SV=1 Length = 3412
Score = 32.0 bits (71), Expect = 3.1 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 11/57 (19%) Frame = +1
Query: 16 WHKNSLPLLAFRISPFVPL-----------VHP*GHSLQQPWRLEVWHRLWLYDLPN 153 +HK + LL+F +S VP+ VH G + L+VW+R+W+ + P+ Sbjct: 3278 FHKRDMRLLSFAVSSAVPMAWVPSGRTTWSVHGKGEWMTTQDMLDVWNRVWVLNNPH 3334
>sp|O26685|PRIS_METTH Probable DNA primase small subunit OS=Methanobacterium thermoautotrophicum GN=priA PE=3 SV=1 Length = 323
Score = 31.2 bits (69), Expect = 5.3 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +3
Query: 42 GLSDI--TFRSLGAPIRTLSPAAMEVGSVASAMALRFTKPSAGPR 170 GL DI + G +R L P ME+GS A LR+T + PR Sbjct: 137 GLGDIHVIYSGRGYHVRVLDPEVMELGSEVRAEILRYTAGAREPR 181
>sp|Q1X880|POLG_YEFVU Genome polyprotein OS=Yellow fever virus (isolate Uganda/A7094A4/1948) PE=3 SV=1 Length = 3412
Score = 30.8 bits (68), Expect = 7.0 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Frame = +1
Query: 16 WHKNSLPLLAFRISPFVPL-----------VHP*GHSLQQPWRLEVWHRLWLYDLPN 153 +HK + LL+F +S VP VH G + L+VW+R+W+ + P+ Sbjct: 3278 FHKRDMRLLSFAVSSAVPTAWVPSGRTTWSVHGKGEWMTTEDMLDVWNRVWVLNNPH 3334
>sp|Q1X881|POLG_YEFVN Genome polyprotein OS=Yellow fever virus (isolate Angola/14FA/1971) PE=3 SV=1 Length = 3412
Score = 30.8 bits (68), Expect = 7.0 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Frame = +1
Query: 16 WHKNSLPLLAFRISPFVPL-----------VHP*GHSLQQPWRLEVWHRLWLYDLPN 153 +HK + LL+F +S VP VH G + L+VW+R+W+ + P+ Sbjct: 3278 FHKRDMRLLSFAVSSAVPTAWVPSGRTTWSVHGRGEWMTTEDMLDVWNRVWVLNNPH 3334
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P095 |
Definition |
tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
87 |
Score (bit) |
97.4 |
E-value |
7.0e-19 |
Report |
|