DK949346
Clone id TST38A01NGRL0005_L24
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_L24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
ATGGTCGATCAACTTCCGAGAAAAGAGGTGGTCGCTGGTGAGTTGGCTTTTGTACCTGGC
TCCTCAGTCTGTGCGGGTAATCCTAAGATTGGTGTAGCTGTAAAGTCCATTTATGAGGTT
AGATTGATTTTTTAGACTTTTTGACAAGCATAGCAACCTTAGAAGGCTCGTGCACGGCTT
TTGCTTTACTCAACTGTTGAATTATGATGAGAAGCTAATTTGTATTGAGGTGTCTAATCT
GAGTGCCATACCTCTGGTATTGGTATTGTACCGTAGTGCTAATCTGCACGGATGATGAGC
TGGGAAAAAATGAGACCTACTATTACTGTCCATGGAAGTAGCTTTTGTTGGCATGTAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3KGX9
Definition sp|Q3KGX9|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas fluorescens (strain Pf0-1)
Align length 26
Score (bit) 29.3
E-value 6.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949346|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L24, 5'
(356 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3KGX9|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas f... 29 6.5

>sp|Q3KGX9|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas
fluorescens (strain Pf0-1) GN=nhaA PE=3 SV=1
Length = 395

Score = 29.3 bits (64), Expect = 6.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1

Query: 37 GELAFVPGSSVCAGNPKIGVAVKSIY 114
G LAFVPG+S AG ++G+ S++
Sbjct: 349 GSLAFVPGASEYAGMDRMGILTGSVF 374


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949346|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L24, 5'
(356 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******