DK949346 [AcEST]

DK949346
Clone id	TST38A01NGRL0005_L24
Library	TST38
Length	377
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_L24. 5' end sequence.
Accession	DK949346
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	CL137Contig1
Sequence	ATGGTCGATCAACTTCCGAGAAAAGAGGTGGTCGCTGGTGAGTTGGCTTTTGTACCTGGC TCCTCAGTCTGTGCGGGTAATCCTAAGATTGGTGTAGCTGTAAAGTCCATTTATGAGGTT AGATTGATTTTTTAGACTTTTTGACAAGCATAGCAACCTTAGAAGGCTCGTGCACGGCTT TTGCTTTACTCAACTGTTGAATTATGATGAGAAGCTAATTTGTATTGAGGTGTCTAATCT GAGTGCCATACCTCTGGTATTGGTATTGTACCGTAGTGCTAATCTGCACGGATGATGAGC TGGGAAAAAATGAGACCTACTATTACTGTCCATGGAAGTAGCTTTTGTTGGCATGTAAAA AAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q3KGX9
Definition	sp\|Q3KGX9\|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas fluorescens (strain Pf0-1)
Align length	26
Score (bit)	29.3
E-value	6.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK949346\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_L24, 5' (356 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q3KGX9\|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas f... 29 6.5 >sp\|Q3KGX9\|NHAA_PSEPF Na(+)/H(+) antiporter nhaA OS=Pseudomonas fluorescens (strain Pf0-1) GN=nhaA PE=3 SV=1 Length = 395 Score = 29.3 bits (64), Expect = 6.5 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 37 GELAFVPGSSVCAGNPKIGVAVKSIY 114 G LAFVPG+S AG ++G+ S++ Sbjct: 349 GSLAFVPGASEYAGMDRMGILTGSVF 374
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK949346\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_L24, 5' (356 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****