DK949355 |
Clone id |
TST38A01NGRL0005_M09 |
Library |
TST38 |
Length |
677 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_M09. 5' end sequence. |
Accession |
DK949355 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1464Contig1 |
Sequence |
CGAAGAGGCAACGAAAGATCGAGCCAGCAGTCGTCTTTCGCACATCGCCCAGCATGATTC ACTTTGTGCTGCTCATCAGTCGCCAAGGCAAAGTTCGCCTCACGAAATGGTATTCACCAT ATACACAGAAAGAGAGGCAGAAGGCTATTCGAGAACTTAGTGGCCTCATACTAACGAGGG GACCAAAGCTTTGCAATTTTGTTGAATGGAGAGGTCTAAAGGTTGTTTATAAACGGTATG CCAGCCTTTATTTCTGCATGTGCATCGATCCAGAGGATAATGAGTTGGAATGCCTTGAAA TCATTCATCACTTTGTCGAGATCCTTGATCGATACTTTGGCAATGTTTGTGAATTGGACC TGATTTTCAATTTCCACAAGGCATACTATATTCTTGACGAGGTTTTACTTGCTGGAGAAT TACAAGAAACTAGTAAAAAATCTGTAGCTCGTGTTATTGCAGCACAGGACACGCTGGTGG AAAATGCGAAGGAGCAAGCGAATACATTGACAAATATTATAGCACAAGCCACAAAATAGC AAGGTAACAGGAACTCACATCTTTTGAGCATCGCATTCTGGTGGTGACAAAATGCTACTT CTGCTCTTCTTGGAAGCTGAGTTGTGGGATGGGGAGAATGGCTGGAAACTCCTGTCAAGA ACCAATGCGGCTTAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
B0G185 |
Definition |
sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum |
Align length |
141 |
Score (bit) |
225.0 |
E-value |
2.0e-58 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9THE0 |
Definition |
tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
161 |
Score (bit) |
303.0 |
E-value |
7.0e-81 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949355|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_M09, 5' (677 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella paten... 303 7e-81 tr|A9ST45|A9ST45_PHYPA Predicted protein (Fragment) OS=Physcomit... 299 1e-79 tr|A5C1I3|A5C1I3_VITVI Putative uncharacterized protein OS=Vitis... 291 2e-77 tr|P93078|P93078_CAMAC Ap19 protein OS=Camptotheca acuminata GN=... 291 3e-77 tr|Q10CG6|Q10CG6_ORYSJ Adapter-related protein complex 1 sigma 1... 290 8e-77 tr|A7QG23|A7QG23_VITVI Chromosome undetermined scaffold_91, whol... 290 8e-77 tr|B7FHG4|B7FHG4_MEDTR Putative uncharacterized protein OS=Medic... 289 1e-76 tr|B6T1U4|B6T1U4_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays ... 289 1e-76 tr|A7QNV8|A7QNV8_VITVI Chromosome chr1 scaffold_135, whole genom... 289 1e-76 tr|Q94GI1|Q94GI1_ORYSA Putative clathrin assembly protein (Clath... 288 3e-76 tr|Q10CG5|Q10CG5_ORYSJ Os03g0783700 protein OS=Oryza sativa subs... 288 3e-76 tr|B8AKW4|B8AKW4_ORYSI Putative uncharacterized protein OS=Oryza... 288 3e-76 tr|Q8LEZ8|Q8LEZ8_ARATH Clathrin assembly small subunit protein A... 286 1e-75 tr|O23685|O23685_ARATH Clathrin assembly protein AP19 homolog OS... 285 2e-75 tr|O24611|O24611_ARATH Clathrin assembly protein AP19 homolog OS... 283 5e-75 tr|A9PA09|A9PA09_POPTR Putative uncharacterized protein OS=Popul... 282 1e-74 tr|Q7XZG1|Q7XZG1_ORYSJ Os03g0811300 protein OS=Oryza sativa subs... 272 2e-71 tr|A3ANC1|A3ANC1_ORYSJ Putative uncharacterized protein OS=Oryza... 257 5e-67 tr|B6U542|B6U542_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays ... 256 7e-67 tr|B7FML5|B7FML5_MEDTR Putative uncharacterized protein OS=Medic... 244 4e-63 tr|A5K4J4|A5K4J4_PLAVI Clathrin assembly protein AP19, putative ... 223 7e-57 tr|Q8III7|Q8III7_PLAF7 Clathrin assembly protein AP19, putative ... 223 1e-56 tr|Q4Z0X3|Q4Z0X3_PLABE Clathrin assembly protein AP19, putative ... 221 3e-56 tr|B3L4Y4|B3L4Y4_PLAKH Clathrin assembly protein AP19, putative ... 220 6e-56 tr|Q7RE52|Q7RE52_PLAYO Clathrin assembly protein AP19, small sub... 218 4e-55 tr|Q5CVH4|Q5CVH4_CRYPV Aps1p/AP17 like clathrin adaptor protein ... 212 2e-53 tr|Q5DW58|Q5DW58_BOTBR Sigma1 subunit of AP-1 complex of clathri... 211 3e-53 tr|Q3E9R0|Q3E9R0_ARATH Uncharacterized protein At4g35410.1 OS=Ar... 211 3e-53 tr|Q5CEK9|Q5CEK9_CRYHO Clathrin assembly protein AP19 OS=Cryptos... 211 3e-53 tr|B6AHE2|B6AHE2_9CRYT Clathrin adaptor complex small chain fami... 207 4e-52
>tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222350 PE=4 SV=1 Length = 161
Score = 303 bits (776), Expect = 7e-81 Identities = 146/161 (90%), Positives = 157/161 (97%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MIHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+IL+RGPKLCNF+EWRGLKVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILSRGPKLCNFLEWRGLKVVYK 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMC+D +DNELE LEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVL+A Sbjct: 61 RYASLYFCMCVDADDNELETLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQETSKKSVARVIAAQDTL+E+AKEQ+N+L+NIIAQATK Sbjct: 121 GELQETSKKSVARVIAAQDTLIEHAKEQSNSLSNIIAQATK 161
>tr|A9ST45|A9ST45_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_134897 PE=4 SV=1 Length = 161
Score = 299 bits (766), Expect = 1e-79 Identities = 144/160 (90%), Positives = 156/160 (97%) Frame = +3
Query: 57 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 236 IHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+IL+RGPKLCNF+EWRGLKVVYKR Sbjct: 2 IHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILSRGPKLCNFLEWRGLKVVYKR 61
Query: 237 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 416 YASLYFCMC+D +DNELE LEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVL+AG Sbjct: 62 YASLYFCMCVDTDDNELETLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLIAG 121
Query: 417 ELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 ELQETSKKSVARVIAAQDTL+E+AKEQ+++L+NIIAQATK Sbjct: 122 ELQETSKKSVARVIAAQDTLIEHAKEQSSSLSNIIAQATK 161
>tr|A5C1I3|A5C1I3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017884 PE=4 SV=1 Length = 161
Score = 291 bits (746), Expect = 2e-77 Identities = 140/161 (86%), Positives = 155/161 (96%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MIHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+ILTRGPKLCNFVEWRG KVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 161
>tr|P93078|P93078_CAMAC Ap19 protein OS=Camptotheca acuminata GN=ap19 PE=2 SV=1 Length = 161
Score = 291 bits (744), Expect = 3e-77 Identities = 140/161 (86%), Positives = 155/161 (96%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MIHFVLLISRQGKVRLTKWYSP+TQKER K IRELSGLILTRGPKLCNFVEWRG KVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPHTQKERNKVIRELSGLILTRGPKLCNFVEWRGFKVVYK 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQE+SKK+VAR+IAAQD+LVE AKEQA++++N+IAQATK Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQASSISNMIAQATK 161
>tr|Q10CG6|Q10CG6_ORYSJ Adapter-related protein complex 1 sigma 1B subunit, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g57040 PE=4 SV=1 Length = 161
Score = 290 bits (741), Expect = 8e-77 Identities = 139/161 (86%), Positives = 155/161 (96%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MI+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEW+G KVVY+ Sbjct: 1 MINFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYR 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMCID EDNELE LEIIHHFVE+LDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 121 GELQESSKKNVARLIAAQDSLVEAAKEEASSISNIIAQATK 161
>tr|A7QG23|A7QG23_VITVI Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037672001 PE=4 SV=1 Length = 167
Score = 290 bits (741), Expect = 8e-77 Identities = 139/160 (86%), Positives = 154/160 (96%) Frame = +3
Query: 57 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 236 IHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+ILTRGPKLCNFVEWRG KVVYKR Sbjct: 8 IHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 67
Query: 237 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 416 YASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+AG Sbjct: 68 YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 127
Query: 417 ELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 ELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 128 ELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 167
>tr|B7FHG4|B7FHG4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 161
Score = 289 bits (740), Expect = 1e-76 Identities = 140/161 (86%), Positives = 153/161 (95%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MIHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+ILTR PKLCNFVEWRG KVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRAPKLCNFVEWRGHKVVYK 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMCID DNELE LE+IHHFVEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQE+SKK+VAR+IAAQD+LVE AKE+A++L+NIIAQATK Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK 161
>tr|B6T1U4|B6T1U4_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays PE=2 SV=1 Length = 161
Score = 289 bits (739), Expect = 1e-76 Identities = 140/161 (86%), Positives = 155/161 (96%) Frame = +3
Query: 54 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 233 MI+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEWRG KVVY+ Sbjct: 1 MINFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWRGYKVVYR 60
Query: 234 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 413 RYASLYFCMCID EDNELE LEII+HFVEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDAEDNELEVLEIIYHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
Query: 414 GELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 GELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 121 GELQESSKKNVARLIAAQDSLVEAAKEEASSISNIIAQATK 161
>tr|A7QNV8|A7QNV8_VITVI Chromosome chr1 scaffold_135, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002691001 PE=4 SV=1 Length = 167
Score = 289 bits (739), Expect = 1e-76 Identities = 138/160 (86%), Positives = 154/160 (96%) Frame = +3
Query: 57 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 236 IHFVLLISRQGKVRLTKWYSPY+QKER K IRELSG+ILTRGPKLCNFVEWRG KVVYKR Sbjct: 8 IHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 67
Query: 237 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 416 YASLYFCMCID +DNELE LEIIHHFVEILDRYFG+VCELDLIFNFHKAYY+LDE+L+AG Sbjct: 68 YASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIAG 127
Query: 417 ELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 ELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 128 ELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 167
>tr|Q94GI1|Q94GI1_ORYSA Putative clathrin assembly protein (Clathrin assembly protein AP19-like protein) OS=Oryza sativa GN=OSJNBb0093E13.11 PE=2 SV=1 Length = 182
Score = 288 bits (736), Expect = 3e-76 Identities = 138/160 (86%), Positives = 154/160 (96%) Frame = +3
Query: 57 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 236 I+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEW+G KVVY+R Sbjct: 23 INFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYRR 82
Query: 237 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 416 YASLYFCMCID EDNELE LEIIHHFVE+LDRYFG+VCELDLIFNFHKAYYILDE+L+AG Sbjct: 83 YASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 142
Query: 417 ELQETSKKSVARVIAAQDTLVENAKEQANTLTNIIAQATK 536 ELQE+SKK+VAR+IAAQD+LVE AKE+A++++NIIAQATK Sbjct: 143 ELQESSKKNVARLIAAQDSLVEAAKEEASSISNIIAQATK 182
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