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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949364
Clone id TST38A01NGRL0005_M18
Library
Length 662
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_M18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TTCACACGTACAGAGTGCGGTTTCCGTCAGCATTTCTTCTGAAGGCTTGAGCACATTTGG
GTTCCCATCTCTGTCGAATTTGGATAATTTTTGTGATCTCGGACTCACATGGTCGTTCTT
TAGCTGCTCTAAGCCAGGACCTTCAAGCTCAGCTTCATTATACTTTTGGGCCTACTTCAC
TAATGAGAGCTGGTCTTTAATTGAAAGACATAAGCTTGCTTTTGCTTCAGGCAAAAGTTC
TCAATGAACTGGTCACTTTCCATCACGAGAAGGGAGGACTGGTGGTCTTCGGGTGGCACC
AATGGCTGGGCCACTTGTATTGTCATGGGTTTTCTGTTTGGGCTTTATGCTATGCGTTCC
TTGATGTGGCCATTCCTAAAACGTTATTTGGGGAGGAGCTCGTCCAACCTCTCCTTGACG
AGTAGCGAATGCGCTTCTGATGTCTCTAGTGGTGGTCTCCCCATTATTACTGAAGCTGAC
TTGCAAAGGTTACTGATGCTGTTGGATGAAGAGGGGCATTCATGTGGAACTCCGTGGATA
CCTGTGGTTGATAAATACAGTGATACCCTATCATACCATGCAAAACTTCGTGAGCCAAAG
GATGGAAGCCCTACCGAATACCTTAGCACATCCCTTTTCCGTGACTGCTCTTGTAAACTT
CT
■■Homology search results ■■ -
sp_hit_id Q5K9L9
Definition sp|Q5K9L9|ATG4_CRYNE Cysteine protease ATG4 OS=Cryptococcus neoformans
Align length 88
Score (bit) 32.7
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949364|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_M18, 5'
         (662 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5K9L9|ATG4_CRYNE Cysteine protease ATG4 OS=Cryptococcus neof...    33   1.8  
sp|Q92610|ZN592_HUMAN Zinc finger protein 592 OS=Homo sapiens GN...    31   5.1  
sp|A5PJS2|S5A1_BOVIN 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=...    31   5.1  
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...    31   6.7  

>sp|Q5K9L9|ATG4_CRYNE Cysteine protease ATG4 OS=Cryptococcus
           neoformans GN=ATG4 PE=3 SV=1
          Length = 1193

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = -3

Query: 483 QVSFSNNGETTTRDIRSAFATRQGEVGRAPPQITF*E-------------WPHQGTHSIK 343
           Q S ++   TT+R I SAF  +     R  P+ +F +             WP     SI+
Sbjct: 169 QSSSTSTDSTTSRSITSAFTRQNSIQSRRSPRTSFGQAHSRRASQDSQMSWP--APRSIR 226

Query: 342 PKQKTHDNTSGPAIGATRRPPVLPSRDG 259
               +HD +S P   A+     +P R G
Sbjct: 227 SSTTSHDPSSDPQNSASSTGVPIPQRQG 254


>sp|Q92610|ZN592_HUMAN Zinc finger protein 592 OS=Homo sapiens
           GN=ZNF592 PE=1 SV=2
          Length = 1267

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -3

Query: 276 LPSRDGK*PVH*ELLPEAKASLCLSIKDQLSLVK*AQKYNEAELEGPGLEQLKNDHVSPR 97
           +P R    P H +L     A + L  K   S+ K  Q  +  +L GP  E  K     P+
Sbjct: 268 VPPRQRLKPAHSKLSSCVAALVALQAKRVASVTKEDQPGHTKDLSGPTKESSKGSPKMPK 327

Query: 96  SQKLSKFDRDGNPNVLKPSE 37
           S K  +   +     +KPS+
Sbjct: 328 SPKSPRSPLEATRKSIKPSD 347


>sp|A5PJS2|S5A1_BOVIN 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos
           taurus GN=SRD5A1 PE=2 SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 301 NGWATCIVMGFLFGLYAMRSLMWPFLKR 384
           N W  CI++      YA RSL++PFL R
Sbjct: 78  NRWPNCILLAMFLVHYAQRSLVFPFLIR 105


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 445 SSGGLPIITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYL 624
           SS   P+  +A+     ++ +    SC   W PV  K  +TLSY   L E + G   +YL
Sbjct: 29  SSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYL 88

Query: 625 STSLFRDC 648
             + +  C
Sbjct: 89  LRNKWIPC 96
tr_hit_id A9TZ10
Definition tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 64.7
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949364|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_M18, 5'
         (662 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment) OS=Physcomit...    65   5e-09
tr|Q8W255|Q8W255_MEDSA Putative nodule membrane protein OS=Medic...    52   3e-05
tr|Q94C36|Q94C36_ARATH At3g13062 OS=Arabidopsis thaliana GN=At3g...    51   6e-05
tr|Q8GWN9|Q8GWN9_ARATH Putative uncharacterized protein OS=Arabi...    51   6e-05
tr|Q3EB74|Q3EB74_ARATH Uncharacterized protein At3g13062.2 OS=Ar...    51   6e-05
tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidop...    51   7e-05
tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidop...    50   1e-04
tr|A7Q4I7|A7Q4I7_VITVI Chromosome chr9 scaffold_49, whole genome...    50   2e-04
tr|Q93YV2|Q93YV2_ARATH Putative membrane related protein CP5 OS=...    46   0.002
tr|Q7F1L8|Q7F1L8_ORYSJ Putative membrane related protein CP5 OS=...    45   0.004
tr|Q0D845|Q0D845_ORYSJ Os07g0185200 protein OS=Oryza sativa subs...    45   0.004
tr|B8B7W5|B8B7W5_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.004
tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.004
tr|B7FHR4|B7FHR4_MEDTR Putative uncharacterized protein (Fragmen...    44   0.009
tr|Q9LG14|Q9LG14_ARATH F14J16.24 OS=Arabidopsis thaliana PE=4 SV=1     43   0.015
tr|A7QJ33|A7QJ33_VITVI Chromosome chr2 scaffold_105, whole genom...    42   0.026
tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.034
tr|Q7XTJ2|Q7XTJ2_ORYSJ Os04g0119500 protein OS=Oryza sativa subs...    41   0.075
tr|Q6ZXK5|Q6ZXK5_ORYSJ Membrane related protein OS=Oryza sativa ...    41   0.075
tr|Q01MR5|Q01MR5_ORYSA H0716A07.8 protein OS=Oryza sativa GN=H07...    41   0.075
tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.075
tr|A2XPT7|A2XPT7_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.075
tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed ...    40   0.13 
tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w ...    40   0.13 
tr|Q9XIR9|Q9XIR9_ARATH Putative membrane related protein OS=Arab...    39   0.22 
tr|Q9XF49|Q9XF49_ARATH Membrane related protein CP5 OS=Arabidops...    39   0.22 
tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative u...    39   0.22 
tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g2308...    39   0.22 
tr|Q8L7P8|Q8L7P8_ARATH Membrane related protein CP5, putative OS...    39   0.22 
tr|Q2V3T7|Q2V3T7_ARATH Uncharacterized protein At3g23080.2 OS=Ar...    39   0.22 

>tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152890 PE=4 SV=1
          Length = 335

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 28/65 (43%), Positives = 46/65 (70%)
 Frame = +1

Query: 466 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFRD 645
           +TE DL ++L +L ++ +   + W  V+DK +D++SY AK R+PKDG  TEYLST++  +
Sbjct: 7   VTEEDLAQVLSVLSQDDNGENSQWEQVIDKQNDSVSYTAKRRDPKDGGATEYLSTTVHEN 66

Query: 646 CSCKL 660
           CS ++
Sbjct: 67  CSTQV 71


>tr|Q8W255|Q8W255_MEDSA Putative nodule membrane protein OS=Medicago
           sativa PE=2 SV=1
          Length = 424

 Score = 52.4 bits (124), Expect = 3e-05
 Identities = 30/71 (42%), Positives = 44/71 (61%)
 Frame = +1

Query: 439 DVSSGGLPIITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTE 618
           D S+G    +T  DL  L  L++E+    G PWI ++DK + T+SY A  REPKDG P +
Sbjct: 114 DTSNG----VTINDLHHLYKLVEEKDG--GLPWIQMMDKSTPTMSYQAWRREPKDG-PPQ 166

Query: 619 YLSTSLFRDCS 651
           Y S+++F D +
Sbjct: 167 YRSSTIFEDAT 177


>tr|Q94C36|Q94C36_ARATH At3g13062 OS=Arabidopsis thaliana
           GN=At3g13062 PE=2 SV=1
          Length = 403

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +1

Query: 463 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFR 642
           ++++ DL+ L+  L E        W  V+ K +  +SY AK  +P DGSP +YLST++F 
Sbjct: 83  LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTTVFE 141

Query: 643 DCS 651
           DCS
Sbjct: 142 DCS 144


>tr|Q8GWN9|Q8GWN9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 403

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +1

Query: 463 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFR 642
           ++++ DL+ L+  L E        W  V+ K +  +SY AK  +P DGSP +YLST++F 
Sbjct: 83  LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTTVFE 141

Query: 643 DCS 651
           DCS
Sbjct: 142 DCS 144


>tr|Q3EB74|Q3EB74_ARATH Uncharacterized protein At3g13062.2
           OS=Arabidopsis thaliana GN=At3g13062 PE=4 SV=1
          Length = 440

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +1

Query: 463 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFR 642
           ++++ DL+ L+  L E        W  V+ K +  +SY AK  +P DGSP +YLST++F 
Sbjct: 83  LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTTVFE 141

Query: 643 DCS 651
           DCS
Sbjct: 142 DCS 144


>tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 449

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 25/62 (40%), Positives = 41/62 (66%)
 Frame = +1

Query: 466 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFRD 645
           +TE DL+ L+ L++ +    G  WI ++D+++  + Y A LREPK+G PTEY S ++F D
Sbjct: 129 VTELDLRHLVQLVERKDG--GQAWIQMMDRFTSGMRYQAWLREPKNG-PTEYRSRTVFED 185

Query: 646 CS 651
            +
Sbjct: 186 AT 187


>tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 400

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 25/62 (40%), Positives = 41/62 (66%)
 Frame = +1

Query: 466 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFRD 645
           +TE DL+ L+ L++ +    G  WI ++D+++  + Y A LREPK+G PTEY S ++F D
Sbjct: 80  VTELDLRHLVQLVERKDG--GQAWIQMMDRFTPGMRYQAWLREPKNG-PTEYRSRTVFED 136

Query: 646 CS 651
            +
Sbjct: 137 AT 138


>tr|A7Q4I7|A7Q4I7_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029707001
           PE=4 SV=1
          Length = 381

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 35/126 (27%), Positives = 60/126 (47%)
 Frame = +1

Query: 283 WSSGGTNGWATCIVMGFLFGLYAMRSLMWPFLKRYXXXXXXXXXXXXXXXXXDVSSGGLP 462
           W   G  GWAT + +  +   +  R +     +                    +S     
Sbjct: 16  WEIHGAGGWATMVAVLVIILWHLGRLIFSARFRSSSNSTPTSLSASAVNPQFRISE---- 71

Query: 463 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTSLFR 642
           I+ +ADL+ L+  LDE+  +    W  VVDK ++ +SY+AK  +PKDG P +Y+S ++F 
Sbjct: 72  IVGDADLKTLIDNLDEK-LNLNERWDNVVDKRNNFVSYNAKCCKPKDG-PLKYVSVTVFE 129

Query: 643 DCSCKL 660
           +CS ++
Sbjct: 130 NCSTEM 135


>tr|Q93YV2|Q93YV2_ARATH Putative membrane related protein CP5
           OS=Arabidopsis thaliana GN=At1g55960 PE=2 SV=1
          Length = 403

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +1

Query: 463 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKD-GSPTEYLSTSLF 639
           ++++ DL+ L+  L+EE +     W  V+ K +D +SY AK  +PKD G P +YLS ++F
Sbjct: 82  LVSDEDLKFLIENLEEETNDSTEIWEHVIHKSNDRISYSAKRCKPKDGGGPMKYLSVTVF 141

Query: 640 RDCSCKL 660
              S ++
Sbjct: 142 EGFSAEI 148


>tr|Q7F1L8|Q7F1L8_ORYSJ Putative membrane related protein CP5
           OS=Oryza sativa subsp. japonica GN=OJ1046_F10.130-1 PE=4
           SV=1
          Length = 394

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 25/70 (35%), Positives = 42/70 (60%)
 Frame = +1

Query: 451 GGLPIITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLST 630
           GG  ++TE DL+ L+ LLD +  S  T W  ++++ +  ++Y A  REP+ G P  Y S 
Sbjct: 86  GGHHVVTEKDLEHLVQLLDNK-ESGDTTWQHLMERTTSNMTYKAWRREPEVG-PIMYCSR 143

Query: 631 SLFRDCSCKL 660
           ++F D + +L
Sbjct: 144 TIFEDATPEL 153