DK949378 |
Clone id |
TST38A01NGRL0005_N08 |
Library |
TST38 |
Length |
753 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_N08. 5' end sequence. |
Accession |
DK949378 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL69Contig1 |
Sequence |
GGCGGATAAGCTCGAGCTTGCAACCAGTCTTATGGAGAAAGCGAAAGCAAAGGGCGTCTC TTTAATGTTGCCGACTGATGTTGTTATTGCAGACAAATTCGCTCCTGATGCCAATAGCAA GACTGTACCTGCATCGGCCATCCCAGAAGGATGGATGGGTCTTGACATTGGTCCTGATTC CATTAAGACATTCAGTGAGGCCTTGGAAACAACCAAAACTGTCATCTGGAATGGGCCCAT GGGTGTATTTGAGTTTGATAAGTTTGCTGCTGGCACTGAGGCAATTGCAAAGAAGCTGGC AGACATAAGTGGAAAAGGTGTTACCACAATCATTGGTGGTGGAGACTCGGTTGCCGCTGT CGAAAAGGTTGGAGTAGCCGAAAAAATGAGCCACATTTCAACAGGCGGTGGTGCAAGCTT GGAATTGCTGGAAGGCAAGGTTTTGCCTGGTGTTGCAGCCCTAGACGAAGCTGTCGTATC TGTTGCAGCTTGAGGGGAACTTGTTTTCGTATGATGTCCTTTAGCCGCGACACATCTTGA ACCTTGTATCATCCTTTGCTCTTCCTTTTTGTAAATAGGTGCCAAAACCTAGTTGTGCCA AGAGCTGATTTGAGTTCTCAATTTTCTCTCGTCCAATATAAAGAGATTGATGTTCAGCTT GAGCTCAGAAAGGGCATGGGTCATTATTGTTTTTATTCAATGTCAAAAAAAATTTACACT TTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42961 |
Definition |
sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum |
Align length |
161 |
Score (bit) |
264.0 |
E-value |
4.0e-70 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949378|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_N08, 5' (725 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=N... 264 4e-70 sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic OS=Nicot... 252 1e-66 sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=T... 251 2e-66 sp|P50318|PGKH_ARATH Phosphoglycerate kinase, chloroplastic OS=A... 247 4e-65 sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triti... 245 2e-64 sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fra... 241 2e-63 sp|Q3MF40|PGK_ANAVT Phosphoglycerate kinase OS=Anabaena variabil... 228 2e-59 sp|Q8YPR1|PGK_ANASP Phosphoglycerate kinase OS=Anabaena sp. (str... 226 1e-58 sp|A5GW73|PGK_SYNR3 Phosphoglycerate kinase OS=Synechococcus sp.... 224 3e-58 sp|A2CDG7|PGK_PROM3 Phosphoglycerate kinase OS=Prochlorococcus m... 224 3e-58 sp|Q3AGU1|PGK_SYNSC Phosphoglycerate kinase OS=Synechococcus sp.... 223 1e-57 sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase OS=Synechococcus elo... 223 1e-57 sp|Q7V461|PGK_PROMM Phosphoglycerate kinase OS=Prochlorococcus m... 223 1e-57 sp|Q0I6M5|PGK_SYNS3 Phosphoglycerate kinase OS=Synechococcus sp.... 222 1e-57 sp|Q3AVX6|PGK_SYNS9 Phosphoglycerate kinase OS=Synechococcus sp.... 221 2e-57 sp|Q5N4Z6|PGK_SYNP6 Phosphoglycerate kinase OS=Synechococcus sp.... 220 7e-57 sp|P74421|PGK_SYNY3 Phosphoglycerate kinase OS=Synechocystis sp.... 219 1e-56 sp|Q7U3V0|PGK_SYNPX Phosphoglycerate kinase OS=Synechococcus sp.... 217 4e-56 sp|A5GPB2|PGK_SYNPW Phosphoglycerate kinase OS=Synechococcus sp.... 214 4e-55 sp|B0JT86|PGK_MICAN Phosphoglycerate kinase OS=Microcystis aerug... 214 4e-55 sp|Q2JXF0|PGK_SYNJA Phosphoglycerate kinase OS=Synechococcus sp.... 213 8e-55 sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplastic OS=V... 210 5e-54 sp|Q2JKX6|PGK_SYNJB Phosphoglycerate kinase OS=Synechococcus sp.... 210 7e-54 sp|B0CD95|PGK_ACAM1 Phosphoglycerate kinase OS=Acaryochloris mar... 210 7e-54 sp|Q8DGP7|PGK_THEEB Phosphoglycerate kinase OS=Thermosynechococc... 209 2e-53 sp|Q7VDZ4|PGK_PROMA Phosphoglycerate kinase OS=Prochlorococcus m... 206 8e-53 sp|A2C025|PGK_PROM1 Phosphoglycerate kinase OS=Prochlorococcus m... 206 1e-52 sp|P41758|PGKH_CHLRE Phosphoglycerate kinase, chloroplastic OS=C... 206 1e-52 sp|Q46HH8|PGK_PROMT Phosphoglycerate kinase OS=Prochlorococcus m... 204 4e-52 sp|A2BNZ0|PGK_PROMS Phosphoglycerate kinase OS=Prochlorococcus m... 202 1e-51
>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Length = 481
Score = 264 bits (674), Expect = 4e-70 Identities = 134/161 (83%), Positives = 143/161 (88%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELATSL+EKAKAKGVSL+LP+DVVIADKFAPDANSK VPASAIP+GWMGLDIGPDS+ Sbjct: 320 DKLELATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSV 379
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 KTF++AL+TTKTVIWNGPMGVFEFDKFA GTEAIAKKLAD+SGKGVTTIIGGGDS Sbjct: 380 KTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVE 439
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEAVVSVA 487 MSHISTGGGASLELLEGKVLPGV ALDEA VA Sbjct: 440 KVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADAPVA 480
>sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1 Length = 401
Score = 252 bits (644), Expect = 1e-66 Identities = 128/156 (82%), Positives = 137/156 (87%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKL+LATSLMEKAKAKGVSL+LPTDVVIADKFA DANSK VPAS IP+GWMGLDIGPD+I Sbjct: 246 DKLDLATSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDAI 305
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 K+F AL+TTKTVIWNGPMGVFEFDKFAAGTEAIAKKLA++SGKGVTTIIGGGDS Sbjct: 306 KSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVE 365
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGK LPGV ALD+A Sbjct: 366 KVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401
>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 480
Score = 251 bits (642), Expect = 2e-66 Identities = 124/159 (77%), Positives = 141/159 (88%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELATSL+ KAKAKGVSL+LP+DV+IADKFAPDANS+TVPASAIP+GWMGLDIGPDS+ Sbjct: 317 DKLELATSLLAKAKAKGVSLLLPSDVIIADKFAPDANSQTVPASAIPDGWMGLDIGPDSV 376
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 KTF++AL+TT+T+IWNGPMGVFEFDKFA GTE+IAKKLA++S KGVTTIIGGGDS Sbjct: 377 KTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVE 436
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEAVVS 481 MSHISTGGGASLELLEGK LPGV ALDE V++ Sbjct: 437 KVGVADVMSHISTGGGASLELLEGKELPGVVALDEGVMT 475
>sp|P50318|PGKH_ARATH Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2 Length = 478
Score = 247 bits (631), Expect = 4e-65 Identities = 125/157 (79%), Positives = 136/157 (86%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELAT L+ KAKAKGVSL+LPTDVV+ADKFAPDANSK VPAS I +GWMGLDIGPDSI Sbjct: 318 DKLELATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSI 377
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 KTF+EAL+TT+TVIWNGPMGVFE +KFAAGTEAIA KLA++S KGVTTIIGGGDS Sbjct: 378 KTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVE 437
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEAV 475 MSHISTGGGASLELLEGKVLPGV ALDEA+ Sbjct: 438 KVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEAI 474
>sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1 Length = 401
Score = 245 bits (625), Expect = 2e-64 Identities = 122/156 (78%), Positives = 137/156 (87%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELATSL+E AK+KGV L+LPTDVV+ADKFA DA SK VPA+AIP+GWMGLD+GPDSI Sbjct: 246 DKLELATSLIETAKSKGVKLLLPTDVVVADKFAADAESKIVPATAIPDGWMGLDVGPDSI 305
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 KTF+EAL+TTKTVIWNGPMGVFEF+KFAAGT+AIAK+LA+++GKGVTTIIGGGDS Sbjct: 306 KTFAEALDTTKTVIWNGPMGVFEFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVE 365
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGK LPGV ALDEA Sbjct: 366 KAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401
>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2 Length = 433
Score = 241 bits (616), Expect = 2e-63 Identities = 124/156 (79%), Positives = 134/156 (85%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKL+LATSL+ KAK KGVSL+LPTDVVIADKFA DA+SK VPAS IP+GWMGLDIGPDSI Sbjct: 273 DKLDLATSLLAKAKEKGVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSI 332
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 KTFSEAL+TT+TVIWNGPMGVFEF+KFAAGTEAIAKKL +IS KG TTIIGGGDS Sbjct: 333 KTFSEALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVE 392
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGK LPGV AL+EA Sbjct: 393 KVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428
>sp|Q3MF40|PGK_ANAVT Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1 Length = 400
Score = 228 bits (582), Expect = 2e-59 Identities = 117/156 (75%), Positives = 125/156 (80%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELA SL KAK +GVSL+LPTDVV+AD FAPDANS+TV IP+GWMGLDIGPDS+ Sbjct: 245 DKLELAKSLEAKAKERGVSLLLPTDVVLADNFAPDANSQTVSIDNIPDGWMGLDIGPDSV 304
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 K F EAL TKTVIWNGPMGVFEFDKFAAGTEAIA LA+I G TTIIGGGDS Sbjct: 305 KVFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVE 364
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGKVLPG+AALDEA Sbjct: 365 KVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400
>sp|Q8YPR1|PGK_ANASP Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1 Length = 400
Score = 226 bits (576), Expect = 1e-58 Identities = 116/156 (74%), Positives = 124/156 (79%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELA SL KAK +GVSL+LPTDVV+AD FAPDANS+TV IP+GWMGLDIGPDS+ Sbjct: 245 DKLELAKSLEAKAKERGVSLLLPTDVVLADNFAPDANSQTVSIENIPDGWMGLDIGPDSV 304
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 K F AL TKTVIWNGPMGVFEFDKFAAGTEAIA LA+I G TTIIGGGDS Sbjct: 305 KVFQAALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVE 364
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGKVLPG+AALDEA Sbjct: 365 KVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400
>sp|A5GW73|PGK_SYNR3 Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1 Length = 402
Score = 224 bits (572), Expect = 3e-58 Identities = 116/156 (74%), Positives = 122/156 (78%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELA L KAKAKGV L+LPTDVV+AD FAPDANS+ AIPEGWMGLDIGPDSI Sbjct: 246 DKLELAKELEAKAKAKGVQLLLPTDVVLADNFAPDANSQVASIDAIPEGWMGLDIGPDSI 305
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 K F +AL KTVIWNGPMGVFEFDKFAAGT AIA LA++S KG TIIGGGDS Sbjct: 306 KVFQDALGDCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELSAKGCCTIIGGGDSVAAVE 365
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGKVLPGVAALDEA Sbjct: 366 KAGLAAQMSHISTGGGASLELLEGKVLPGVAALDEA 401
>sp|A2CDG7|PGK_PROM3 Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1 Length = 401
Score = 224 bits (572), Expect = 3e-58 Identities = 115/156 (73%), Positives = 124/156 (79%) Frame = +2
Query: 5 DKLELATSLMEKAKAKGVSLMLPTDVVIADKFAPDANSKTVPASAIPEGWMGLDIGPDSI 184 DKLELA L KAKAKGV L+LPTDVV+AD F+PDANS+TV AIP+GWMGLDIGPDSI Sbjct: 246 DKLELAKELEAKAKAKGVQLLLPTDVVLADDFSPDANSQTVSIDAIPDGWMGLDIGPDSI 305
Query: 185 KTFSEALETTKTVIWNGPMGVFEFDKFAAGTEAIAKKLADISGKGVTTIIGGGDSXXXXX 364 F +AL +TVIWNGPMGVFEFDKFAAGT AIA LAD+SGKG TIIGGGDS Sbjct: 306 NLFQDALADCQTVIWNGPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVE 365
Query: 365 XXXXXXXMSHISTGGGASLELLEGKVLPGVAALDEA 472 MSHISTGGGASLELLEGKVLPGVAALD+A Sbjct: 366 KAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2XPV6 |
Definition |
tr|Q2XPV6|Q2XPV6_SOLTU Phosphoglycerate kinase OS=Solanum tuberosum |
Align length |
161 |
Score (bit) |
266.0 |
E-value |
1.0e-69 |
Report |
|