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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949446
Clone id TST38A01NGRL0006_A05
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_A05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTCGTTAAATATATATCTTGCAAGTTAGGTTTCTTTCAGTAGCGTTCTCCTGTGGGTTCT
TCAGATCGCCATGGATGGGTATCGCGATCTCCTCCGTGTGCCTGTTTCTGCAGGTTACTA
TGCCTCTTCTCGCTACCCAGTTGGTTATGGCGACCCTCTATACTCATATTCTCGTGCTGC
CCTGGATGCTTATGCCGGCTATGGAGCCCCCGTCTCCTACCCGCCAGAGCCCGTCCCTCT
ACCTCAGTACGCTCAATACCCCTCCCCCAGGCGCCGCATGAACCCTAGGCGTCGCCCTCC
TCCACAGAACAACAACAAGCGTAGGCCTGCGCCTTCAGAGACCCTCACGCCAAAGAAGAA
GTCCTTCAAGAAAACGCAGAAATCGTTGCATGTCGAAAGTTTCTCATCTAAGGGAGACCT
GCGCAAGGGAAAGGCCCCTAGCAAGCTGCAGCAGAAAGATGTGGAGAAGGCCAAATCTCC
TGCTTCAACTCTGGCGAAGGAGACCGAGGAGCTTCACAAACTCTTCAGAACTGGGGTAGA
CAATGGCAAGAATAGTGAAACCAGTTGCAAAGCAAGCTGCTGGATCACCGGGCAAGAAGG
TGACCTCCAACGGTGTTGGGCAGAAGAGAAAAGCAGATGAGGAGAGGAAAGAGGCTCCCT
CCAAGAAGAAGAACAAGGGAAAGA
■■Homology search results ■■ -
sp_hit_id Q9ULV5
Definition sp|Q9ULV5|HSF4_HUMAN Heat shock factor protein 4 OS=Homo sapiens
Align length 47
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949446|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_A05, 5'
         (684 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ULV5|HSF4_HUMAN Heat shock factor protein 4 OS=Homo sapiens...    33   1.1  
sp|P76190|YDHO_ECOLI Uncharacterized protein ydhO OS=Escherichia...    33   1.4  
sp|P35662|CYLC1_BOVIN Cylicin-1 OS=Bos taurus GN=CYLC1 PE=1 SV=1       33   1.8  
sp|P22844|H10B_XENLA Histone H1.0-B OS=Xenopus laevis GN=h1f0-B ...    27   1.9  
sp|Q6NVM0|H10_XENTR Histone H1.0 OS=Xenopus tropicalis GN=h1f0 P...    27   2.5  
sp|Q9BWE0|REPI1_HUMAN Replication initiator 1 OS=Homo sapiens GN...    32   3.1  
sp|Q8IV32|CCD71_HUMAN Coiled-coil domain-containing protein 71 O...    32   3.1  
sp|Q1HGE8|HSF4_CANFA Heat shock factor protein 4 OS=Canis famili...    32   4.1  
sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subun...    31   7.0  
sp|Q8K4J6|MKL1_MOUSE MKL/myocardin-like protein 1 OS=Mus musculu...    30   9.1  
sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYC...    30   9.1  
sp|Q113S1|3MGH_TRIEI Putative 3-methyladenine DNA glycosylase OS...    30   9.2  

>sp|Q9ULV5|HSF4_HUMAN Heat shock factor protein 4 OS=Homo sapiens
           GN=HSF4 PE=1 SV=1
          Length = 493

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 186 MLMPAMEPPSPTRQSPSLYLSTLNTPPPGAA*TLGVALLHRTTTSVG 326
           M +  M+P  P R  P L +  LN+P PG   TLG  LL     ++G
Sbjct: 415 MELSLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALG 461


>sp|P76190|YDHO_ECOLI Uncharacterized protein ydhO OS=Escherichia
           coli (strain K12) GN=ydhO PE=3 SV=1
          Length = 271

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 23/91 (25%), Positives = 38/91 (41%)
 Frame = +2

Query: 344 LTPXXXXXXXXXXSLHVESFSSKGDLRKGKAPSKLQQKDVEKAKSPASTLAKETEELHKL 523
           LTP          S      + K D +K  A +K  QK  +KA S ++T +K    + K 
Sbjct: 21  LTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKK- 79

Query: 524 FRTGVDNGKNSETSCKASCWITGQEGDLQRC 616
             + +   KN++T  K +   T      ++C
Sbjct: 80  --SSITASKNAKTRSKHAVNKTASASFTEKC 108


>sp|P35662|CYLC1_BOVIN Cylicin-1 OS=Bos taurus GN=CYLC1 PE=1 SV=1
          Length = 667

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +2

Query: 407 SKGDLRKGKAPSKLQQKDVEK--AKSPA--STLAKETEELHKLFRTGVDNGKNSETSCKA 574
           S+GD +K K  SK  +KD++K   K PA  S  + ETE   +  +   D+ K+++ + K 
Sbjct: 472 SEGDAKKSKKDSKKDKKDLKKDDQKKPAMKSKESTETESDWESKKVKRDSKKDTKKTAKK 531

Query: 575 SCWITGQEGDL 607
           +   +G E D+
Sbjct: 532 ATESSGAESDV 542


>sp|P22844|H10B_XENLA Histone H1.0-B OS=Xenopus laevis GN=h1f0-B
           PE=1 SV=1
          Length = 196

 Score = 27.3 bits (59), Expect(2) = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 549 RIVKPVAKQAAGSPGKKVTSNGVGQKRKADEERKEAPSKKKNK 677
           ++ KP  K+AA SP K        +K K   ++K APS KK K
Sbjct: 120 KVAKP--KKAAKSPAKAKKPKVAEKKVKKVAKKKPAPSPKKAK 160



 Score = 24.3 bits (51), Expect(2) = 1.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 425 KGKAPSKLQQKDVEKAKSP 481
           +GK P+K  +K+++KA SP
Sbjct: 100 EGKKPAKKPKKEIKKAVSP 118


>sp|Q6NVM0|H10_XENTR Histone H1.0 OS=Xenopus tropicalis GN=h1f0 PE=2
           SV=1
          Length = 196

 Score = 26.6 bits (57), Expect(2) = 2.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 570 KQAAGSPGKKVTSNGVGQKRKADEERKEAPSKKKNK 677
           K+AA SP K        +K K   ++K APS KK K
Sbjct: 125 KKAAKSPAKAKKPKVAEKKVKKPAKKKPAPSPKKAK 160



 Score = 24.6 bits (52), Expect(2) = 2.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 425 KGKAPSKLQQKDVEKAKSP 481
           +GK P+K  +K+++KA SP
Sbjct: 100 EGKKPAKKPKKEIKKAASP 118


>sp|Q9BWE0|REPI1_HUMAN Replication initiator 1 OS=Homo sapiens
           GN=REPIN1 PE=1 SV=1
          Length = 567

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 399 VSHLRETCARERPLA--SCSRKMWRRPNLLLQLWRRRP 506
           V HLR   A +RP+A   C R+ WRR  L   L R  P
Sbjct: 132 VLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHP 169


>sp|Q8IV32|CCD71_HUMAN Coiled-coil domain-containing protein 71
           OS=Homo sapiens GN=CCDC71 PE=2 SV=2
          Length = 467

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 558 KPVAKQAAGSPGKKVTSNGVGQKRKADEERKEAPSKKKNK 677
           K  AK      G+K     VGQKRK  EE K+ P KK+ +
Sbjct: 367 KGSAKARTTRKGQKNRPETVGQKRKRAEEAKDLPPKKRTR 406


>sp|Q1HGE8|HSF4_CANFA Heat shock factor protein 4 OS=Canis
           familiaris GN=HSF4 PE=2 SV=1
          Length = 492

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 186 MLMPAMEPPSPTRQSPSLYLSTLNTPPPGAA*TLGVALLHRTTTSVG 326
           M +  M+P  P R    L +  LN+P PG   TLG  LL     ++G
Sbjct: 415 MELSLMQPLGPERSETELAVKGLNSPGPGKDSTLGAPLLLDVQAALG 461


>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2
            OS=Homo sapiens GN=TAF2 PE=1 SV=3
          Length = 1199

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 203  HSRHKHPGQHENMSIEGRHNQLGSEKRHSNLQKQAHGG-DRDTHPWRSEEPTGERY*KKP 27
            HS H H   HE+   + +H       +H +  K  H   ++D  P+    P   R  + P
Sbjct: 1143 HSDHHHHHHHEHKKKKKKH-------KHKHKHKHKHDSKEKDKEPFTFSSPASGRSIRSP 1195

Query: 26   NLQD 15
            +L D
Sbjct: 1196 SLSD 1199


>sp|Q8K4J6|MKL1_MOUSE MKL/myocardin-like protein 1 OS=Mus musculus
           GN=Mkl1 PE=1 SV=2
          Length = 964

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 102 LFLQVTMPLLATQLVMATLYTHILVLPWMLMPAMEPPSPTRQSPSLYLSTLNTPPPGAA* 281
           LFLQ+ +     Q      Y +  +LP    P+ E P  +  +PS  LST ++P  G   
Sbjct: 303 LFLQLQILNQQQQQQQQQHYNYQAILPAPPKPSAETPGSSAPTPSRSLSTSSSPSSGTPG 362

Query: 282 TLGVA 296
             G+A
Sbjct: 363 PSGLA 367
tr_hit_id A9VLA0
Definition tr|A9VLA0|A9VLA0_BACWK VrrB protein OS=Bacillus weihenstephanensis (strain KBAB4)
Align length 45
Score (bit) 40.0
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949446|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_A05, 5'
         (684 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9VLA0|A9VLA0_BACWK VrrB protein OS=Bacillus weihenstephanens...    40   0.14 
tr|Q2HI64|Q2HI64_CHAGB Putative uncharacterized protein OS=Chaet...    39   0.40 
tr|B6N0X5|B6N0X5_BRAFL Putative uncharacterized protein OS=Branc...    36   2.6  
tr|B6KDI4|B6KDI4_TOXGO Putative uncharacterized protein OS=Toxop...    36   2.6  
tr|B4MCR7|B4MCR7_DROVI GJ15288 OS=Drosophila virilis GN=GJ15288 ...    35   4.5  
tr|A4IG65|A4IG65_DANRE MGC162288 protein OS=Danio rerio GN=MGC16...    35   5.8  
tr|Q5BJV8|Q5BJV8_RAT Taf2 protein (Fragment) OS=Rattus norvegicu...    35   5.8  
tr|Q6SL34|Q6SL34_9MAXI NADH-ubiquinone oxidoreductase chain 6 OS...    35   5.8  
tr|B0WYG8|B0WYG8_CULQU Hyp37.3 putative secreted salivary gland ...    35   5.8  
tr|Q3BV75|Q3BV75_XANC5 RNase R OS=Xanthomonas campestris pv. ves...    35   5.9  
tr|A7HP07|A7HP07_PARL1 Sensor protein OS=Parvibaculum lavamentiv...    34   7.6  
tr|Q4SAR0|Q4SAR0_TETNG Chromosome 3 SCAF14679, whole genome shot...    34   7.7  
tr|B4DV52|B4DV52_HUMAN cDNA FLJ57608, highly similar to Solute c...    34   7.7  
tr|A0RJX1|A0RJX1_BACAH Putative uncharacterized protein OS=Bacil...    34   9.9  
tr|B3ZL03|B3ZL03_BACCE VrrB protein OS=Bacillus cereus 03BB108 G...    34   9.9  

>tr|A9VLA0|A9VLA0_BACWK VrrB protein OS=Bacillus weihenstephanensis
           (strain KBAB4) GN=BcerKBAB4_4568 PE=4 SV=1
          Length = 383

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 203 HSRHKHPGQHENMSIEGRHNQLGSEKRHSNLQKQA-HGGDRDTHP 72
           H  H H GQHE+    G H Q G  + H + Q+Q  H G    HP
Sbjct: 158 HEHHGHHGQHEHHGHHGHHQQHGHHQHHGHHQQQVHHHGHHQIHP 202


>tr|Q2HI64|Q2HI64_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_00090 PE=4 SV=1
          Length = 518

 Score = 38.5 bits (88), Expect = 0.40
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 141 LVMATLYTHILV--LPWMLMPAMEPPSPTRQSPSLYLSTLNTPPPGAA*TLGVALL 302
           L++A  +T+ LV  + W++    EPPSPT  SP L+    N PPP     +G+  L
Sbjct: 285 LMIARSFTYFLVPHVLWVITTYGEPPSPTPLSPLLFTLPTNPPPPPPGIYIGLGAL 340


>tr|B6N0X5|B6N0X5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_89229 PE=4 SV=1
          Length = 755

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 203 HSRHKHPGQHENMSIEGRHNQLGSEKRHSNLQKQAHGGDRDTHPWRSEEPTGERY*KKPN 24
           H + KH  +H+    EG H+  GSE  H   + ++H  D++     S++P  +   KK  
Sbjct: 395 HKKDKHHSKHKGSKGEGSHSGHGSEGSH---KTKSHKHDKEKRKRSSDDPEVKTSSKKQR 451

Query: 23  LQDIYLT 3
           + D  LT
Sbjct: 452 ISDPALT 458


>tr|B6KDI4|B6KDI4_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_072750 PE=4 SV=1
          Length = 166

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 395 ESFSSKGDLRKGKAPSKLQQKDVEKAKSPASTLAKETEEL--HKLFRTGVDNGKNSETSC 568
           E+   + + +K +A +K ++   ++A+    +LA+ T E   H  FR  + +GKNS T  
Sbjct: 20  ETKKKEAETKKKEAETKKKEAKRKQARGRIHSLARGTHEQRRHSCFRRTLFSGKNSSTER 79

Query: 569 KASCWITGQE 598
           K   W T  E
Sbjct: 80  KKPAWATRAE 89


>tr|B4MCR7|B4MCR7_DROVI GJ15288 OS=Drosophila virilis GN=GJ15288
           PE=4 SV=1
          Length = 672

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 214 LLPARARPSTSVRSIPLPQAPHEP*ASPSSTEQQQ 318
           LLP R RP+T V   P  ++  +P A P S +QQQ
Sbjct: 533 LLPTRIRPATIVEKAPAMESAEKPQAQPQSEQQQQ 567


>tr|A4IG65|A4IG65_DANRE MGC162288 protein OS=Danio rerio
           GN=MGC162288 PE=1 SV=1
          Length = 618

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = -2

Query: 179 QHENMSIEGRHNQLGSEKRHSNLQKQAHGGDRDTHPWRSEEPTGERY*KKPNLQDIY 9
           QH+    E    QL  EK+H     Q    D DT P  SEE  GE+  +K NL D++
Sbjct: 117 QHKLQKSEQSVAQLEEEKKHLEFMNQIRKLDEDTSP--SEEKAGEK--EKDNLDDLF 169


>tr|Q5BJV8|Q5BJV8_RAT Taf2 protein (Fragment) OS=Rattus norvegicus
           GN=Taf2 PE=2 SV=1
          Length = 379

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -2

Query: 203 HSRHKHPGQHENMSIEGRHNQLGSEKRHSNLQKQAHGG---DRDTHPWRSEEPTGERY*K 33
           HS H H   HE+   + +H       +H +  K  H G   D+D  P+    P   R  +
Sbjct: 321 HSEHHHHHHHEHKKKKKKH-------KHKHKHKHKHDGKDKDKDKEPFTFSSPASGRSVR 373

Query: 32  KPNLQD 15
            P+L D
Sbjct: 374 SPSLSD 379


>tr|Q6SL34|Q6SL34_9MAXI NADH-ubiquinone oxidoreductase chain 6
           OS=Armillifer armillatus GN=nad6 PE=3 SV=1
          Length = 147

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
 Frame = +3

Query: 15  ILQVRFLSVAFSCGFFRSPWMGIAISSVC--------LFLQVTMP--LLATQLVMATLYT 164
           ILQ   LS+  +     +PW  I IS +         L+L    P   +  + +  +L T
Sbjct: 25  ILQTTLLSLTLNL-HLNTPWYPIIISLITIGGALIIFLYLSTLGPNTTMQPEKIKWSLLT 83

Query: 165 HILVLPWMLMPAMEPPSPTRQSPSLYLSTLNTPPP 269
            + +LP +L+P   PP+P   +PS+ LS+   P P
Sbjct: 84  PLTLLP-LLIPTPLPPTPLTNNPSITLSSNYLPLP 117


>tr|B0WYG8|B0WYG8_CULQU Hyp37.3 putative secreted salivary gland
           protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ012061
           PE=4 SV=1
          Length = 245

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 IVKPVAKQAAGSPGKKVTSNGVGQKRKADEERKEAPSKKKNKG 680
           IVK +A+  A  PGK  TS G   ++   E+ K   S+KK +G
Sbjct: 32  IVKKLAQTLATGPGKNKTSKGKSNEKATGEQSKGTKSEKKTQG 74


>tr|Q3BV75|Q3BV75_XANC5 RNase R OS=Xanthomonas campestris pv.
           vesicatoria (strain 85-10) GN=vacB PE=3 SV=1
          Length = 842

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
 Frame = +1

Query: 220 PARARPSTSVRSIPLPQAPHE----P*ASPSSTEQQQA*ACA-FRDPHAKEEVLQENAEI 384
           P++A P  +  + P P+APH     P A P    Q  A A A F+DPHA+ E L+  AE 
Sbjct: 62  PSKASPQPA-SAPPAPRAPHPRKSGPSAPPPERFQTAAPATAEFKDPHAEREALR-YAEP 119

Query: 385 VACRKFLI 408
           +A R+ ++
Sbjct: 120 IASREAIL 127