DK949456
Clone id TST38A01NGRL0006_A16
Library
Length 701
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_A16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
AAAGACGCTCTCTCGCTGTCTTCTTCTTCGGAAGGGGTGGGAGATGGCGACCTTCGGGAG
CTTCGCAGGCCTTGCTGCGGGCGCCATGGGTGCCCTCTCAAGCTCCGAAATGCAGCTACT
GGGCCTTTACGACTACTCCGCATCGGGTTTCAGCCCAAAGTCCTCTTCCGAGTGGTGCCC
AAAGTGGTTACAGCCAGAGCCTCTTGCATTGTCTTCTTGGAGTTCCCTCCCCAGCTCTGG
TTTTTGGGAGCCAGCTACCTTCAGCAAGTAGATTGGTCTCTATCCTACCTGGCTAGTCCT
CCAGCACAGGATTCAAATCACCGCCTGCAGACGCCTGCACAAAGAAGTGGTTTACTGTCT
CGATTTGCTCTTGCAAAGCTTGCTCCTGAGTTCAATGGAATTGGTTGCTTTGACACAGTC
TTTGGCTGGCAGAGTCCTTGATGATGCGTAGCTTAGTTTTAGAAGATCCCTGAAGCAATC
GAGGATAAGCTCTTTGTTTGTCATCTCATTTTGTGGACACTCAAAAAAGTAGCTATGCAG
TTTTGGCATTCGAGTGTCATGTTGGATTGATTTCTGGCTGTCTGCACGTGTGTGGATTCT
CCCTTGTAGGTGTTAATCTGAGAGGTGAGGTGGCTTCTTGTTTCCATCCGTTTTGGATGT
CCCCTTCAAGAGAATCTATNTTGTGTGGTTAACTGTGGACT
■■Homology search results ■■ -
sp_hit_id P35523
Definition sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle OS=Homo sapiens
Align length 31
Score (bit) 33.1
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949456|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_A16, 5'
(701 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle ... 33 1.5
sp|Q9Y267|S22AE_HUMAN Solute carrier family 22 member 14 OS=Homo... 33 1.9
sp|A4YJE9|IF2_BRASO Translation initiation factor IF-2 OS=Bradyr... 33 1.9
sp|A5UZW0|Y3809_ROSS1 UPF0078 membrane protein RoseRS_3809 OS=Ro... 31 5.6
sp|Q6DKI7|PVRIG_HUMAN Transmembrane protein PVRIG OS=Homo sapien... 31 5.6

>sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle
OS=Homo sapiens GN=CLCN1 PE=1 SV=2
Length = 988

Score = 33.1 bits (74), Expect = 1.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3

Query: 141 HRVSAQSPLPSGAQSGYSQSLLHCLLGVPSP 233
H+ ++P P+G + QSLLHCLLG P
Sbjct: 751 HKQQPEAPEPAGQRPSIFQSLLHCLLGRARP 781


>sp|Q9Y267|S22AE_HUMAN Solute carrier family 22 member 14 OS=Homo
sapiens GN=SLC22A14 PE=2 SV=2
Length = 594

Score = 32.7 bits (73), Expect = 1.9
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1

Query: 127 LRLLRIGFQPKVLFR-VVPKV--VTARASCIVFLEFPPQLWFLGASYLQQVDWSLSYLAS 297
LR+ +G V FR VVP + V AR CI L+ + W L + LQ + W L L
Sbjct: 400 LRMRELGVS--VHFRHVVPSIMEVPARLCCIFLLQQIGRKWSLAVTLLQAIIWCLLLLFL 457

Query: 298 PPAQD 312
P +D
Sbjct: 458 PEGED 462


>sp|A4YJE9|IF2_BRASO Translation initiation factor IF-2
OS=Bradyrhizobium sp. (strain ORS278) GN=infB PE=3 SV=1
Length = 921

Score = 32.7 bits (73), Expect = 1.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3

Query: 27 FGRGGRWRPSGAS-QALLRAPWVPSQAPKCSYWAFTTTPHRVSAQSPLPSGAQSG 188
FG G RP+ A+ Q + AP P+QAP A + P ++ S P G+Q G
Sbjct: 178 FGEGEAPRPAAAAPQPTVSAPARPAQAPGRPQGAPGSRPQQIGGPSSRPGGSQPG 232


>sp|A5UZW0|Y3809_ROSS1 UPF0078 membrane protein RoseRS_3809
OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_3809 PE=3
SV=1
Length = 203

Score = 31.2 bits (69), Expect = 5.6
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3

Query: 15 AVFFFGRGGRWRPSGASQALLRAPWVPSQAPKCSYWAFTTTPHRVSAQSPLPSGAQSGYS 194
++F RGG+ +G L AP V P + WA T R+SA + L + A G +
Sbjct: 98 SIFLGFRGGKAVATGGGVVLTLAPLVA--LPGLAAWAVTFGITRISAVASLTAAAVCGIA 155

Query: 195 QSLLHCLLGVPSPALVF 245
++L L +P +F
Sbjct: 156 AAVLLALGMLPPAYAIF 172


>sp|Q6DKI7|PVRIG_HUMAN Transmembrane protein PVRIG OS=Homo sapiens
GN=PVRIG PE=2 SV=1
Length = 326

Score = 31.2 bits (69), Expect = 5.6
Identities = 24/97 (24%), Positives = 35/97 (36%)
Frame = +3

Query: 33 RGGRWRPSGASQALLRAPWVPSQAPKCSYWAFTTTPHRVSAQSPLPSGAQSGYSQSLLHC 212
R W PS ASQA L P Y T+ + + P G S ++ H
Sbjct: 215 RARAWAPSQASQAALHVP----------YATINTSCRPATLDTAHPHGGPSWWASLPTHA 264

Query: 213 LLGVPSPALVFGSQLPSASRLVSILPG*SSSTGFKSP 323
PA + +P+ VS+ G + G + P
Sbjct: 265 AHRPQGPAAWASTPIPARGSFVSVENGLYAQAGERPP 301


tr_hit_id B6KJ80
Definition tr|B6KJ80|B6KJ80_TOXGO ThiF family domain-containing protein OS=Toxoplasma gondii ME49
Align length 85
Score (bit) 38.9
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949456|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_A16, 5'
(701 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6KJ80|B6KJ80_TOXGO ThiF family domain-containing protein OS=... 39 0.32
tr|Q0IMM2|Q0IMM2_ORYSJ Os12g0561900 protein (Fragment) OS=Oryza ... 35 3.6

>tr|B6KJ80|B6KJ80_TOXGO ThiF family domain-containing protein
OS=Toxoplasma gondii ME49 GN=TGME49_029690 PE=4 SV=1
Length = 1332

Score = 38.9 bits (89), Expect = 0.32
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3

Query: 75 LRAPWVPSQAPKCSYWAFTTTPHRVSAQSPLPSGAQSGYSQSLLHCLLGVPSPALVFGSQ 254
L+ PWVP A P R + LP G Q + + G SPAL+ Q
Sbjct: 133 LQTPWVPLLAVSTPKHCMVRAPRRAES---LPEGGQEWRREKAVSAATGSLSPALLRLDQ 189

Query: 255 LPSAS-RLVSILPG*SSSTGFKSPP 326
S L S+LP +S+ F SPP
Sbjct: 190 TAFDSPSLCSVLPSSCASSAFASPP 214


>tr|Q0IMM2|Q0IMM2_ORYSJ Os12g0561900 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os12g0561900 PE=4 SV=1
Length = 162

Score = 35.4 bits (80), Expect = 3.6
Identities = 34/118 (28%), Positives = 46/118 (38%)
Frame = +3

Query: 33 RGGRWRPSGASQALLRAPWVPSQAPKCSYWAFTTTPHRVSAQSPLPSGAQSGYSQSLLHC 212
RG RWRP GA A + +P R S + P S ++S S S H
Sbjct: 3 RGARWRPCGA--------------------ASSGSPSR-SGRWPRGSASRSSPSASSRH- 40

Query: 213 LLGVPSPALVFGSQLPSASRLVSILPG*SSSTGFKSPPADACTKKWFTVSICSCKACS 386
P PA + PS + + P SS+ S PA CT +W C+ C+
Sbjct: 41 --RPPDPA----AAAPSPEKKTTTPPTPSSAGWTPSRPARCCTSRWGARCHCASTRCT 92