DK949468 |
Clone id |
TST38A01NGRL0006_B04 |
Library |
TST38 |
Length |
707 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_B04. 5' end sequence. |
Accession |
DK949468 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL456Contig1 |
Sequence |
AACCGAGTCACGGCTCTGCTTATCGCTTAGACTTGCGCAGGCAGAGCTCTCTGCTGCTGC AAGTCTAGGCTAAGCTTAGCTGGGCTCTCCCCTCGCTCTTCCAGGAGCCTGCTCTCTCGC CTTTCTCCGATCTTGTGCCCTGTCGCGGTTTTTCTTTGTGCACCATTCTCAGGAATGGCT GCAATGGCAAAGTCTTGTCTTGACAAGACAACTGCTTTACAGGCCTCACCGTTTAGGCAG GATGGAGTTGCCTCCTCAGCGAAGTGTGGACAACATGCAATTCTAAGCATGCCCCTCCAC CAGAGTAAAACCAGAAAGTTGAGACCTGCGAGTTTTGATAAGTTGCCAACACTAAGTTTG CGCAAGGGGAAGGCTGTTTTGCCACATGGAACATGGAGGACTATATCAGCAATTGCGGCT CCTATCGCACCGCCCCTGAGTGATCCTTCGTACAGAGCAAAGCTGGCGGAAGAGTATGGC TTTTCTCAAATTGGTGAGCCCGTTCCTCCAAATGTGACACTGAAGAATGTGATGGACTCT TTGCCTCCAGAGGTGTTTGAGATTAACAACATGAAGGCATGGAGGACTGTAGCTATCACG GTTACTGCCTATGCAGCAGGGCTTTTTATGATTGCAAAGGCACCCTGGTATCTTCTACCA TTGGCATGGGCTTGGACCGGAACTGCTGCAACAGGGTTCTTTGTTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48627 |
Definition |
sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus |
Align length |
84 |
Score (bit) |
110.0 |
E-value |
7.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949468|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_B04, 5' (707 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast... 110 7e-24 sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast... 107 6e-23 sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast... 105 2e-22 sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast... 103 7e-22 sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensi... 46 2e-04 sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. ... 46 2e-04 sp|P49272|TXP9_APTSC Aptotoxin-9 OS=Aptostichus schlingeri PE=1 ... 32 2.6 sp|P49267|TXP1_APTSC Aptotoxin-1 OS=Aptostichus schlingeri PE=1 ... 32 4.4 sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabid... 31 7.5
>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1 Length = 443
Score = 110 bits (275), Expect = 7e-24 Identities = 52/84 (61%), Positives = 65/84 (77%) Frame = +1
Query: 454 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 633 R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI Sbjct: 80 REQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139
Query: 634 AKAPWYLLPLXXXXXXXXXXXFFV 705 AKAPWYLLPL FFV Sbjct: 140 AKAPWYLLPLAWAWTGTAVTGFFV 163
>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1 Length = 424
Score = 107 bits (267), Expect = 6e-23 Identities = 50/85 (58%), Positives = 66/85 (77%) Frame = +1
Query: 451 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 630 YR +LAE+YGF Q+GEP+ +VTLK+V++ LP EVFEI+++KAW++V I+VT+YA GLFM Sbjct: 78 YRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFM 137
Query: 631 IAKAPWYLLPLXXXXXXXXXXXFFV 705 I+KAPWYLLPL FFV Sbjct: 138 ISKAPWYLLPLAWVWTGTAITGFFV 162
>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1 Length = 447
Score = 105 bits (262), Expect = 2e-22 Identities = 49/82 (59%), Positives = 62/82 (75%) Frame = +1
Query: 460 KLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAK 639 +LAE YGF QIGEP+P +VT+++++ SLP +VFEIN+ KAW TV I+VT+YA G+FMIAK Sbjct: 87 QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAK 146
Query: 640 APWYLLPLXXXXXXXXXXXFFV 705 APWYLLPL FFV Sbjct: 147 APWYLLPLAWAWTGTAITGFFV 168
>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2 Length = 448
Score = 103 bits (258), Expect = 7e-22 Identities = 50/84 (59%), Positives = 63/84 (75%) Frame = +1
Query: 454 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 633 R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KA ++V I+VT+Y GLFMI Sbjct: 85 REQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMI 144
Query: 634 AKAPWYLLPLXXXXXXXXXXXFFV 705 AK+PWYLLPL FFV Sbjct: 145 AKSPWYLLPLAWAWTGTAITGFFV 168
>sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1 Length = 351
Score = 46.2 bits (108), Expect = 2e-04 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = +1
Query: 502 VPPNVTLK-NVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPWYLLPLXXXXX 678 VP ++ L+ +++++LP VF + KAW TV I V G IA APW+LLP+ Sbjct: 18 VPSDLPLEEDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFT 77
Query: 679 XXXXXXFFV 705 FFV Sbjct: 78 GTALTGFFV 86
>sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1 Length = 351
Score = 45.8 bits (107), Expect = 2e-04 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = +1
Query: 511 NVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPWYLLPL 663 ++ L++++ +LP E FE KAW +V IT+ A A G I PWY LP+ Sbjct: 23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPI 73
>sp|P49272|TXP9_APTSC Aptotoxin-9 OS=Aptostichus schlingeri PE=1 SV=1 Length = 76
Score = 32.3 bits (72), Expect = 2.6 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3
Query: 663 QW*KIPGCLCNHKKPCCIGSNRDS--YSPPC 577 QW K PG LC+ + CC + DS YS C Sbjct: 21 QWCKTPGALCSSRSECCKAKHSDSVTYSSGC 51
>sp|P49267|TXP1_APTSC Aptotoxin-1 OS=Aptostichus schlingeri PE=1 SV=1 Length = 74
Score = 31.6 bits (70), Expect = 4.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3
Query: 663 QW*KIPGCLCNHKKPCCIGSNRDSYSPPC 577 QW K PG LC+ + CC + +YS C Sbjct: 21 QWCKTPGDLCSSRSECCKAEDSVTYSSGC 49
>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=EMB2301 PE=2 SV=2 Length = 365
Score = 30.8 bits (68), Expect = 7.5 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2
Query: 214 QLSCQDKTLPLQPFLRMVHKEKPRQ-GTRSEKGERAGSWKSEGRAQLSLA*TCSSRELCL 38 Q C+ T P + HK+K GTR+ + AG WK+ GR ++ + + R + + Sbjct: 62 QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS---NGRRIGM 118
Query: 37 RKS 29 RK+ Sbjct: 119 RKT 121
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TJT1 |
Definition |
tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
84 |
Score (bit) |
117.0 |
E-value |
1.0e-24 |
Report |
|