DK949494
Clone id TST38A01NGRL0006_C06
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_C06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GAATTACATAGCCAGATCGGCAAGCTTGCGCCGCGCAGCTAGTCTCTATCGATCAATATC
AAACTTCCCAGCCCTCTAATTCTACATGAAACCATCATCACTGTTCGCTCCGCGGCTCAC
TTGAAAAGATTTGGACCTTGTGTCGATCCATCCATCCTGATTTTTATCAGCAAATTATTA
TCACTGTTATTTAGCCAATTTGTGGACAATAGAATGGGAGAAACCATATCTTGGATTGCA
GTGAACAAGAGTGGAGAAGTCTGCCTCGACTCCGACCTCCCGCCCCTTCCGAGAGGATGG
GAAAGGTGCCTTGATCTGCAGTCAGGAGTCATGTACTTGAAGCAAATGAACCCACAACCA
GGTGAATCCAAAAGTGGTGGGATTGGCCAGAGCAGAGCAACAACCCATAAGAGACAGCGA
GTATTGCTCGGCAATGACGACGGCGAAGGCGATCCCACGCTGCAACTAAGCCTCTCATTA
CCCTCATCCACCAACACCCAATCTCATCCAAGCAATCCATCTTCACTTAGTGATGCAAAC
TCAATTGTCAACAATGAGCTCAAATATTTATCATGTCGACGAGAAGATGCGACCACAGCG
AACTCGCCTCCTCAGAATGCCTCTTCCTCGTCGTCTTCATCATCCCCTCCATCCAAGTTG
GGCTCAAAGA
■■Homology search results ■■ -
sp_hit_id Q4R1I4
Definition sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri
Align length 36
Score (bit) 32.7
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949494|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_C06, 5'
(670 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN... 33 1.8
sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dicty... 31 5.2

>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4
PE=1 SV=1
Length = 706

Score = 32.7 bits (73), Expect = 1.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Frame = -3

Query: 413 LLWVVALLWPIPPLLD-----SPGCGFIC-FKYMTP 324
LLW+ +L+W +PPL S G G C F YMTP
Sbjct: 208 LLWIWSLVWALPPLFGWSAYVSEGFGTSCTFDYMTP 243


>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog
OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1
Length = 550

Score = 31.2 bits (69), Expect = 5.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3

Query: 323 DCRSRHLSHPLGRGGRSESRQTSPLLFTAIQDMVSPILLSTNWLNNSDNN 174
D +S L P R + S ++SP L ++ + SP L + N NN++NN
Sbjct: 207 DIQSTSLKKPSARKSNTTSPKSSPFLSSSAGSIQSPPLNNNNNNNNNNNN 256


tr_hit_id A9RXE5
Definition tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 41.6
E-value 0.046
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949494|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_C06, 5'
(670 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.046
tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.39
tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.1
tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella paten... 36 2.5
tr|Q0V4Z9|Q0V4Z9_PHANO Putative uncharacterized protein OS=Phaeo... 36 2.5
tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed O... 35 4.3
tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea m... 35 4.3
tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea m... 35 4.3
tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella paten... 35 4.3
tr|A2ZJ82|A2ZJ82_ORYSI Putative uncharacterized protein OS=Oryza... 35 4.3
tr|B7GAE9|B7GAE9_PHATR Predicted protein OS=Phaeodactylum tricor... 35 5.6
tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whol... 35 5.6
tr|A9SJA3|A9SJA3_PHYPA Predicted protein OS=Physcomitrella paten... 34 7.3
tr|Q10QM7|Q10QM7_ORYSJ Os03g0191200 protein OS=Oryza sativa subs... 34 9.5
tr|A7Q9R8|A7Q9R8_VITVI Chromosome chr5 scaffold_67, whole genome... 34 9.5
tr|A2XDF1|A2XDF1_ORYSI Putative uncharacterized protein OS=Oryza... 34 9.5

>tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_71802 PE=4 SV=1
Length = 454

Score = 41.6 bits (96), Expect = 0.046
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1

Query: 253 GEVCLD-SDLPPLPRGWERCLDLQSGVMYLKQMN 351
G VC D P LP GWE+CLDL+SG++Y K N
Sbjct: 21 GYVCGDLQPEPQLPSGWEKCLDLKSGLIYFKDWN 54


>tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165908 PE=4 SV=1
Length = 418

Score = 39.3 bits (90), Expect = 0.23
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1

Query: 280 PPLPRGWERCLDLQSGVMYLKQMN 351
P LP GWE+CLDL+SG++Y + N
Sbjct: 91 PQLPSGWEKCLDLKSGLIYFRDWN 114


>tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_80180 PE=4 SV=1
Length = 432

Score = 38.5 bits (88), Expect = 0.39
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1

Query: 265 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSG 378
LDS P+P GWE+CLDL++G ++L +N ES G
Sbjct: 82 LDSGDAPVPSGWEKCLDLKTGKLFL--VNKNSDESSFG 117


>tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165909 PE=4 SV=1
Length = 688

Score = 37.0 bits (84), Expect = 1.1
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1

Query: 265 LDSDLPPLPRGWERCLDLQSGVMY 336
LD PLP GWE+CLDL++G +Y
Sbjct: 386 LDPSEEPLPSGWEKCLDLKTGKLY 409


>tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_171133 PE=4 SV=1
Length = 932

Score = 35.8 bits (81), Expect = 2.5
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1

Query: 244 NKSGEVC-LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSGGIGQSRATTHKRQR 420
N S E LD D PLP WE+CLDL++G +Y +KS G+ S +QR
Sbjct: 599 NSSAEFLELDPD-QPLPADWEKCLDLKTGELYF--------VNKSTGVRTSEDPRKVQQR 649

Query: 421 VL 426
V+
Sbjct: 650 VV 651


>tr|Q0V4Z9|Q0V4Z9_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_00915 PE=4 SV=1
Length = 409

Score = 35.8 bits (81), Expect = 2.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1

Query: 412 SYGLLLCSGQSHHFWIHLVVGSFASST*LLTADQGTFPILSEGAGGRSR 266
S G + + H++W HL+ + + + LL D GT+ +L GGR+R
Sbjct: 139 SIGRMAIETRVHNYWNHLIESASSKTGSLLIWDTGTYEVLPRKTGGRNR 187


>tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed
OS=Oryza sativa subsp. japonica GN=LOC_Os12g13100 PE=4
SV=2
Length = 225

Score = 35.0 bits (79), Expect = 4.3
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1

Query: 283 PLPRGWERCLDLQSGVMY 336
PLP WE+CLDLQSG MY
Sbjct: 78 PLPLDWEQCLDLQSGRMY 95


>tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 224

Score = 35.0 bits (79), Expect = 4.3
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1

Query: 283 PLPRGWERCLDLQSGVMY 336
PLP WE+CLDLQSG MY
Sbjct: 86 PLPLDWEQCLDLQSGRMY 103


>tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 232

Score = 35.0 bits (79), Expect = 4.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1

Query: 205 DNRMGETISWIAVNKSGEVCLDSDLPPLPRGWERCLDLQSGVMY 336
D+ GE + I +N D PLP W+RCLD++SG +Y
Sbjct: 57 DDDRGEVVDGIELN--------FDAAPLPPEWQRCLDIKSGQIY 92


>tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160384 PE=4 SV=1
Length = 518

Score = 35.0 bits (79), Expect = 4.3
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1

Query: 265 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSG---GIGQSRATT 405
LD + PLP WE+CLDL++G +Y +N G + S GI + ATT
Sbjct: 166 LDLEGEPLPSHWEKCLDLKTGDLYF--VNRCTGVTSSDDPRGIRTNNATT 213