| DK949512 |
| Clone id |
TST38A01NGRL0006_C24 |
| Library |
TST38 |
| Length |
677 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_C24. 5' end sequence. |
| Accession |
DK949512 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL2207Contig1 |
| Sequence |
GGCACAAGCAAAACATGGGCTCCCGCTACATTGAACTGTTCAGAGCGACCAAGAGTGAGT
GTTTGCAAGCAGTGTGGGGTTTTCCAGGGTGTAGAATGATGGATCCGAGTTTCCAACTAT
TGTTGCTACAGCAACAGGCTGCAATGGGCGCCTTTGGTATGGGTGGATATATGGGCAGGC
AACGAGAGGCCTGGGCAGATTTTAGTAATGAGGCAGCTAGCTTCTATCATGGCAAGGGTA
GGCTGTCAGGTTCAAGAGGTACAGCTGCTTTTGATCGTTCTGGGAATTTTCAAGGAGCTC
AGCACAATCCTATGTCCTGATGCTGGTACCTAATATTGTTCCAGCTACAAACTTCTCGTC
TGTGTCGATCAATGAGGGCTGAACAGACGTCTCTACCTGATTCTTCAGTGTTACCCAGGG
GCCAAGGATGTGGGTGATAGGTCGTTAAATTTTGGCATCAGCAGCACGTAATGGAAAGCC
TCGTCCAATCAGGAGGCTCTCTTCAACCATGTCTTGAAACCAGAAGTGAAGTTGTGGATT
CTCGCTGAATGAGAATCTCAAGGATGAAAACGTCTACTTAAAACTCCAGATTTCAATGAC
GCTGAATTGTGTAGCCATTTAGAACCAGCTAGTTGAGGCTCCAAACAGAATAGTAGGACC
TGATCATTCTATGAAGG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q7ZVR8 |
| Definition |
sp|Q7ZVR8|RB35B_DANRE RNA-binding protein 35B OS=Danio rerio |
| Align length |
26 |
| Score (bit) |
33.1 |
| E-value |
1.4 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949512|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_C24, 5'
(677 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7ZVR8|RB35B_DANRE RNA-binding protein 35B OS=Danio rerio GN=... 33 1.4
sp|Q5ZLR4|RB35B_CHICK RNA-binding protein 35B OS=Gallus gallus G... 33 1.4
sp|Q5XUX1|FBXW9_HUMAN F-box/WD repeat-containing protein 9 OS=Ho... 32 3.1
sp|Q6DEZ7|RB35A_XENTR RNA-binding protein 35A OS=Xenopus tropica... 32 4.0
sp|Q7ZY29|RB35A_XENLA RNA-binding protein 35A OS=Xenopus laevis ... 32 4.0
sp|Q3US41|RB35A_MOUSE RNA-binding protein 35A OS=Mus musculus GN... 32 4.0
sp|Q6NXG1|RB35A_HUMAN RNA-binding protein 35A OS=Homo sapiens GN... 31 6.9
sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3... 31 6.9
sp|Q9KRA6|ATE_VIBCH Putative arginyl-tRNA--protein transferase O... 31 6.9
sp|A5F7F2|ATE_VIBC3 Putative arginyl-tRNA--protein transferase O... 31 6.9
sp|Q8K0G8|RB35B_MOUSE RNA-binding protein 35B OS=Mus musculus GN... 30 9.0
sp|Q9H6T0|RB35B_HUMAN RNA-binding protein 35B OS=Homo sapiens GN... 30 9.0
sp|A1L1G1|RB35A_DANRE RNA-binding protein 35A OS=Danio rerio GN=... 30 9.0
>sp|Q7ZVR8|RB35B_DANRE RNA-binding protein 35B OS=Danio rerio
GN=rbm35b PE=2 SV=2
Length = 736
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MGSRYIE+++AT E L+ G
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGG 310
Score = 32.7 bits (73), Expect = 1.8
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HKQ +G RYIELFR+T +E Q +
Sbjct: 389 HKQILGKRYIELFRSTAAEVQQVL 412
>sp|Q5ZLR4|RB35B_CHICK RNA-binding protein 35B OS=Gallus gallus
GN=RBM35B PE=2 SV=1
Length = 701
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MGSRYIE+++AT E L+ G
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGG 312
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK+ +G RYIELFR+T +E Q +
Sbjct: 391 HKEILGKRYIELFRSTAAEVQQVL 414
>sp|Q5XUX1|FBXW9_HUMAN F-box/WD repeat-containing protein 9 OS=Homo
sapiens GN=FBXW9 PE=2 SV=2
Length = 488
Score = 32.0 bits (71), Expect = 3.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 510 MVEESLLIGRGFPLRAADAKI*RPITHILGPWVTLKNQVETSVQPSLIDTDEKFVAGT 337
M L+G G P R +D RPITH GP + Q+ + +L+ D ++G+
Sbjct: 297 METRDALMGWGGPSRGSDIPPHRPITHEAGPALLKHQQLHSRPVLTLLADDRHIISGS 354
>sp|Q6DEZ7|RB35A_XENTR RNA-binding protein 35A OS=Xenopus tropicalis
GN=rbm35a PE=2 SV=1
Length = 687
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK+ +G RYIELFR+T +E Q +
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVL 414
Score = 30.8 bits (68), Expect = 6.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MG+RYIE+++AT + L+ G
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGG 312
>sp|Q7ZY29|RB35A_XENLA RNA-binding protein 35A OS=Xenopus laevis
GN=rbm35a PE=2 SV=1
Length = 688
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK+ +G RYIELFR+T +E Q +
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVL 414
Score = 30.8 bits (68), Expect = 6.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MG+RYIE+++AT + L+ G
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGG 312
>sp|Q3US41|RB35A_MOUSE RNA-binding protein 35A OS=Mus musculus
GN=Rbm35a PE=2 SV=1
Length = 680
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK+ +G RYIELFR+T +E Q +
Sbjct: 389 HKELLGKRYIELFRSTAAEVQQVL 412
Score = 30.8 bits (68), Expect = 6.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MG+RYIE+++AT + L+ G
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGG 310
>sp|Q6NXG1|RB35A_HUMAN RNA-binding protein 35A OS=Homo sapiens
GN=RBM35A PE=1 SV=2
Length = 681
Score = 30.8 bits (68), Expect = 6.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWG 80
HK +MG+RYIE+++AT + L+ G
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGG 311
Score = 30.8 bits (68), Expect = 6.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK +G RYIELFR+T +E Q +
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVL 413
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3
OS=Homo sapiens GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 30.8 bits (68), Expect = 6.9
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSE 59
HK+ +G RYIE+FR+++SE
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
>sp|Q9KRA6|ATE_VIBCH Putative arginyl-tRNA--protein transferase
OS=Vibrio cholerae GN=ate PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 171 YIHPYQRRPLQPVAVATIVGNSDPSFYTLENPTL 70
Y+H YQ L +AV ++ NS +FYT +P +
Sbjct: 145 YLHLYQGEKLVAIAVTDLLPNSASAFYTFYDPDI 178
>sp|A5F7F2|ATE_VIBC3 Putative arginyl-tRNA--protein transferase
OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
Ogawa 395 / O395) GN=ate PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 171 YIHPYQRRPLQPVAVATIVGNSDPSFYTLENPTL 70
Y+H YQ L +AV ++ NS +FYT +P +
Sbjct: 145 YLHLYQGEKLVAIAVTDLLPNSASAFYTFYDPDI 178
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9S1X0 |
| Definition |
tr|A9S1X0|A9S1X0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
105 |
| Score (bit) |
54.7 |
| E-value |
5.0e-06 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949512|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_C24, 5'
(677 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9S1X0|A9S1X0_PHYPA Predicted protein OS=Physcomitrella paten... 55 5e-06
tr|A9SYU8|A9SYU8_PHYPA Predicted protein OS=Physcomitrella paten... 52 3e-05
tr|Q0B303|Q0B303_BURCM Beta-ketoacyl synthase OS=Burkholderia am... 36 2.6
tr|A8IV12|A8IV12_CHLRE Splicing factor OS=Chlamydomonas reinhard... 35 3.3
tr|B6P1U2|B6P1U2_BRAFL Putative uncharacterized protein OS=Branc... 35 4.4
tr|B6P1T8|B6P1T8_BRAFL Putative uncharacterized protein OS=Branc... 35 4.4
tr|Q9LT32|Q9LT32_ARATH Arabidopsis thaliana genomic DNA, chromos... 34 7.4
tr|B5CUG5|B5CUG5_9BACE Putative uncharacterized protein OS=Bacte... 34 9.7
>tr|A9S1X0|A9S1X0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_162342 PE=4 SV=1
Length = 550
Score = 54.7 bits (130), Expect = 5e-06
Identities = 43/105 (40%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWGFPGCRM---MDPSXXXXXXXXXXXXXXXXXXXYM 173
H+QN+GSRYIELFRATKSE L A G M MDPS M
Sbjct: 352 HRQNIGSRYIELFRATKSEMLLATGGLSSFGMGQPMDPSVQLLLLQQQAAAGAFGMTGLM 411
Query: 174 GRQRE--AWADFSN---EAASFYHGKGR-LSGS-RGTAAFDRSGN 287
G Q +WAD N AASFY + L+GS +AF+ S +
Sbjct: 412 GAQATTGSWADMQNAAAAAASFYQRQAAGLTGSPASVSAFEPSSS 456
Score = 37.0 bits (84), Expect = 1.1
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
H++ MGSRY+ELFR+TK E + AV
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAV 228
>tr|A9SYU8|A9SYU8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_85834 PE=4 SV=1
Length = 527
Score = 52.4 bits (124), Expect = 3e-05
Identities = 39/93 (41%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVWGFPGCRM---MDPSXXXXXXXXXXXXXXXXXXXYM 173
H+QN+GSRYIELFRATKSE L A G M MDPS M
Sbjct: 352 HRQNIGSRYIELFRATKSEMLLATGGLSSFGMGQPMDPSVQLLLLQQQAAAGAFGMTGLM 411
Query: 174 GRQRE--AWADFSN---EAASFYHGKGR-LSGS 254
G Q +W D N AASFY + L+GS
Sbjct: 412 GAQASTGSWVDMQNAAAAAASFYQRQAAGLTGS 444
Score = 37.0 bits (84), Expect = 1.1
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
H++ MGSRY+ELFR+TK E + AV
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAV 228
>tr|Q0B303|Q0B303_BURCM Beta-ketoacyl synthase OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_5925 PE=4
SV=1
Length = 2644
Score = 35.8 bits (81), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 95 STPWKTPHCLQTLTLGRSEQFNVAGAHVLL 6
+ PW+ HCLQT+ R E GAH+LL
Sbjct: 1913 AAPWRLDHCLQTVLAARLEALEADGAHLLL 1942
>tr|A8IV12|A8IV12_CHLRE Splicing factor OS=Chlamydomonas reinhardtii
GN=SPL7 PE=4 SV=1
Length = 647
Score = 35.4 bits (80), Expect = 3.3
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
HK+++GSRYIELF +TK + +QA+
Sbjct: 182 HKESLGSRYIELFVSTKVDMIQAI 205
>tr|B6P1U2|B6P1U2_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_285603 PE=4 SV=1
Length = 645
Score = 35.0 bits (79), Expect = 4.4
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVW 77
HK+++G RYIELFR+T +E +Q VW
Sbjct: 380 HKESLGKRYIELFRSTAAE-VQQVW 403
>tr|B6P1T8|B6P1T8_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_285599 PE=4 SV=1
Length = 564
Score = 35.0 bits (79), Expect = 4.4
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAVW 77
HK+++G RYIELFR+T +E +Q VW
Sbjct: 299 HKESLGKRYIELFRSTAAE-VQQVW 322
>tr|Q9LT32|Q9LT32_ARATH Arabidopsis thaliana genomic DNA, chromosome
3, P1 clone: MOE17 OS=Arabidopsis thaliana PE=4 SV=1
Length = 278
Score = 34.3 bits (77), Expect = 7.4
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 3 HKQNMGSRYIELFRATKSECLQAV 74
++QNMG RY+E+FR+TK E +A+
Sbjct: 101 NRQNMGRRYVEVFRSTKQEYYKAI 124
>tr|B5CUG5|B5CUG5_9BACE Putative uncharacterized protein
OS=Bacteroides plebeius DSM 17135 GN=BACPLE_00336 PE=4
SV=1
Length = 330
Score = 33.9 bits (76), Expect = 9.7
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = +2
Query: 65 ASSVGFSRV*NDGSEFPTIVA-------TATGCNGRLWYGWIYGQATRGL 193
AS +SR DG E P V TATG G +W WIY T+G+
Sbjct: 206 ASECPWSRELQDGKEVPNKVTDGPYLFRTATGRLGMIWTSWIYNVYTQGV 255
|