DK949544 |
Clone id |
TST38A01NGRL0006_E08 |
Library |
TST38 |
Length |
651 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_E08. 5' end sequence. |
Accession |
DK949544 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL100Contig1 |
Sequence |
GGAAAGAACGTCCTCACAAACTTCTGGGGGATGGACTTCACAACAGATAAGCTGCGATCC CTCGTACGCAAGTGGCAATCATTGATTGAGGCACATGTGGATGTGAAGACCACTGACAAC TACACTTTGAGGTTATTTTGTATTGCCTTCACAAAAAAGCGCCCCAATCAAATTAAGAAG ACTTGCTATGCTCAGACGAGTCAAATTCGACAGATCCGTAAGAAAATGATTGAGATAATG GTCCGTGAAGCTCAATCTTGTGACCTGAAGGATCTTGTGGCTAAGTTTATACCTGAGGCT ATTGGAAAGGAGATTGAGAAGGCCACTGCAGGCATTTATCCTCTGCAAAACATTTACATT AGAAAAGTAAAAATTCTGAAAGCACCCAAATTTGATTTGGGGAAGCTGATGGAGGTACAT GGGGATTATTCAGAGGACGTTGGTGTAAAGGTTGAGAGGCCTGCGGAGGATGCAGAGCCC AAGGTGGAGATGGAGTTGGTTGGTGCTTAAATTTTAGTGCCCGCCTTCTATGAATTTTGC GCATTGCTAGTTGTGCCTTCTATTGCGGATTCCTTCATTAGGAAGAGTAGGTTCAGGAAG AACCTTGGCTGGCAGTTTAGTCCTGAGTGATACTGCTTTCAAGATTTTTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49198 |
Definition |
sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus |
Align length |
169 |
Score (bit) |
284.0 |
E-value |
3.0e-76 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949544|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_E08, 5' (651 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus ann... 284 3e-76 sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus r... 283 6e-76 sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis... 283 7e-76 sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis... 283 7e-76 sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa s... 271 2e-72 sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa ... 271 3e-72 sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula rurali... 236 1e-61 sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropic... 215 1e-55 sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis... 215 2e-55 sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a OS=Oryzias latipe... 215 2e-55 sp|Q4R4Z6|RS3A_MACFA 40S ribosomal protein S3a OS=Macaca fascicu... 215 2e-55 sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a OS=Homo sapiens G... 215 2e-55 sp|P61246|RS3A_FELCA 40S ribosomal protein S3a (Fragment) OS=Fel... 215 2e-55 sp|Q56JV9|RS3A_BOVIN 40S ribosomal protein S3a OS=Bos taurus GN=... 215 2e-55 sp|Q4T8S6|RS3A_TETNG 40S ribosomal protein S3a OS=Tetraodon nigr... 214 2e-55 sp|Q6PBY1|RS3A_DANRE 40S ribosomal protein S3a OS=Danio rerio GN... 214 3e-55 sp|P49242|RS3A_RAT 40S ribosomal protein S3a OS=Rattus norvegicu... 214 4e-55 sp|Q98TX2|RS3A_OPHHA 40S ribosomal protein S3a OS=Ophiophagus ha... 214 4e-55 sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a OS=Mus musculus G... 214 4e-55 sp|Q6DV02|RS3A_GECJA 40S ribosomal protein S3a OS=Gecko japonicu... 214 4e-55 sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a OS=Eimeria tenell... 212 2e-54 sp|P40910|RS3A_CANAL 40S ribosomal protein S3aE OS=Candida albic... 204 3e-52 sp|P49395|RS3A_APLCA 40S ribosomal protein S3a OS=Aplysia califo... 199 1e-50 sp|P23248|RS3B_YEAST 40S ribosomal protein S1-B OS=Saccharomyces... 193 6e-49 sp|P33442|RS3A_YEAST 40S ribosomal protein S1-A OS=Saccharomyces... 192 2e-48 sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a OS=Caenorhabditis... 191 2e-48 sp|Q09781|RS3A_SCHPO 40S ribosomal protein S3aE-A OS=Schizosacch... 189 8e-48 sp|O94438|RS3B_SCHPO 40S ribosomal protein S3aE-B OS=Schizosacch... 187 3e-47 sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a OS=Anopheles gamb... 181 2e-45 sp|P55830|RS3A_DROME 40S ribosomal protein S3a OS=Drosophila mel... 173 8e-43
>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2 Length = 260
Score = 284 bits (726), Expect = 3e-76 Identities = 135/169 (79%), Positives = 158/169 (93%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKNVLTNFWGMD TTDKLRSLV+KWQSLIEAHVDVKTTDN+TLR+FCI FTKKR NQ+K+ Sbjct: 93 GKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 TCYAQ+SQI+QIR+KM EIMV +AQ+CDLK+LV KFIPE+IG+EIEKAT+ IYPLQN++I Sbjct: 153 TCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFI 212
Query: 361 RKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPAEDAEPKVEMELVGA 507 RKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPAE+A P+ E++GA Sbjct: 213 RKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260
>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=3 Length = 260
Score = 283 bits (724), Expect = 6e-76 Identities = 137/169 (81%), Positives = 156/169 (92%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTD+YTLR+FCI FTKKR NQ K+ Sbjct: 93 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 TCYAQ+SQIRQIR+KM EIMV +AQSCDLKDLV KFIPE+IG+EIEKAT+ IYPLQN++I Sbjct: 153 TCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFI 212
Query: 361 RKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPAEDAEPKVEMELVGA 507 RKVKILKAPKFDLGKLMEVHGDY+ED+G K++RPAE+A + E++GA Sbjct: 213 RKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAE-PTEVIGA 260
>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3 Length = 262
Score = 283 bits (723), Expect = 7e-76 Identities = 136/170 (80%), Positives = 157/170 (92%), Gaps = 1/170 (0%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 G+NVLT FWGMDFTTDKLRSLV+KWQ+LIEAHVDVKTTD YTLR+FCIAFTK+R NQ+K+ Sbjct: 93 GRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 TCYAQ+SQIRQIR+KM EIMV+EA SCDLK+LVAKFIPEAIG+EIEKAT GIYPLQN++I Sbjct: 153 TCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFI 212
Query: 361 RKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVERPAEDAEPKVEMELVGA 507 RKVKILKAPKFDLGKLMEVHGDY +EDVGVKV+RPA++ + E++GA Sbjct: 213 RKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262
>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=2 SV=3 Length = 262
Score = 283 bits (723), Expect = 7e-76 Identities = 137/170 (80%), Positives = 157/170 (92%), Gaps = 1/170 (0%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 G+NVL FWGMDFTTDKLRSLV+KWQ+LIEAHVDVKTTD+YTLRLFCIAFTK+R NQ+K+ Sbjct: 93 GRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 TCYAQ+SQIRQIR+KM +IMVREA SCDLKDLVAKFIPEAIG+EIEKAT GIYPLQN++I Sbjct: 153 TCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFI 212
Query: 361 RKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVERPAEDAEPKVEMELVGA 507 RKVKILKAPKFDLGKLM+VHGDYS EDVGVKV+RPA++ + E++GA Sbjct: 213 RKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262
>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2 Length = 262
Score = 271 bits (694), Expect = 2e-72 Identities = 127/158 (80%), Positives = 146/158 (92%), Gaps = 1/158 (0%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKNVLTNFWGM FTTDKLRSLV+KWQ+LIEAHVDVKTTD Y LRLFCI FTK+RPNQ+K+ Sbjct: 93 GKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 TCYAQ SQIRQIR+KM+EIM +A SCDLK+LV+KFIPE IGKEIEKAT+ I+PLQN+++ Sbjct: 153 TCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFV 212
Query: 361 RKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVERPAED 471 RKVKILKAPKFDLGKLMEVHGDY+ ED+G K++RPAED Sbjct: 213 RKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2 Length = 262
Score = 271 bits (692), Expect = 3e-72 Identities = 134/171 (78%), Positives = 156/171 (91%), Gaps = 2/171 (1%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 G+NVLT FWGMDFTTDKLRSLV+KWQ+LIE+HVDVKTTDNYTLRLFCIAFTK+R NQ+K+ Sbjct: 93 GRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKR 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVR-EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIY 357 TCYAQ+SQIRQIR KM EIM++ EA SCDLK+LVAKFIPE+IGK+IEKAT GIYPLQN++ Sbjct: 153 TCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVF 212
Query: 358 IRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVERPAEDAEPKVEMELVGA 507 IRKVKILKAPKFDL KLMEVHGDY +EDVGVKV+RPA++ + E++GA Sbjct: 213 IRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADEVVEE-PTEIIGA 262
>sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3 Length = 248
Score = 236 bits (601), Expect = 1e-61 Identities = 119/152 (78%), Positives = 136/152 (89%), Gaps = 1/152 (0%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKNVLTNFWGMDFTTDKLRSLVRKWQSLI+AHVDVKTTDNY +R+FCIAFTKKRPN + Sbjct: 92 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCIAFTKKRPNH-TR 150
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEK-ATAGIYPLQNIY 357 YAQ+SQI IR+KM EIMV+EAQ+CDLK+LVAKFIPE IGKEI++ + GIYPLQ+ + Sbjct: 151 NFYAQSSQI-AIRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTF 209
Query: 358 IRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 453 IRKVKILKAPKFDL KLMEVHGDY+E+VG K+ Sbjct: 210 IRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241
>sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3 Length = 264
Score = 215 bits (548), Expect = 1e-55 Identities = 107/170 (62%), Positives = 133/170 (78%), Gaps = 7/170 (4%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKN LTNF GMD T DK+ S+V+KWQ++IEAHVDVKTTD Y LRLFC+ FTKKR NQI+K Sbjct: 93 GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 T YAQ Q+RQIRKKM+EIM RE Q+ DLK++V K IP++IGK+IEKA IYPL ++Y+ Sbjct: 153 TSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYV 212
Query: 361 RKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVERPAEDAEPKVE 489 RKVK+LK PKF+LGKLME+HG+ ++ G KVER A+ EP V+ Sbjct: 213 RKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER-ADGYEPPVQ 261
>sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis GN=rps3a PE=2 SV=3 Length = 264
Score = 215 bits (547), Expect = 2e-55 Identities = 107/170 (62%), Positives = 132/170 (77%), Gaps = 7/170 (4%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKN LTNF GMD T DK+ S+V+KWQ++IEAHVDVKTTD Y LRLFC+ FTKKR NQI+K Sbjct: 93 GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 T YAQ Q+RQIRKKM EIM RE Q+ DLK++V K IP++IGK+IEKA IYPL ++Y+ Sbjct: 153 TSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYV 212
Query: 361 RKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVERPAEDAEPKVE 489 RKVK+LK PKF+LGKLME+HG+ ++ G KVER A+ EP V+ Sbjct: 213 RKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER-ADGYEPPVQ 261
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3 Length = 266
Score = 215 bits (547), Expect = 2e-55 Identities = 105/172 (61%), Positives = 133/172 (77%), Gaps = 9/172 (5%) Frame = +1
Query: 1 GKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKK 180 GKN LTNF GMD T DK+ S+V+KWQ++IEAHVDVKTTD Y LRLFC+ FTKKR NQ++K Sbjct: 93 GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRK 152
Query: 181 TCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYI 360 T YAQ Q+RQIRKKM+EIM RE Q+ DLK++V K IP+++GK+IEKA IYPL ++Y+ Sbjct: 153 TSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYV 212
Query: 361 RKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVERPAEDAEPKVE 489 RKVK+LK PKF+LGKLME+HG+ +D G KVER A+ EP ++ Sbjct: 213 RKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER-ADGYEPPIQ 263
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNV8 |
Definition |
tr|A9NNV8|A9NNV8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
169 |
Score (bit) |
296.0 |
E-value |
7.0e-79 |
Report |
 |