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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949570
Clone id TST38A01NGRL0006_F11
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_F11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATTGAAGGGAGGAATCTGCGCGTGAACATGGCTGGCGAAAGACCTTCCTCTAGATCCGAT
TTCTTCTAGAAAATTTGCCCGTTGGGGTTTGAACTTGAGACCATCTCCTCTAACCAGAGG
CTCTGATTTTGAGGGTCGGGGCTTCCTTTATCTGCTGAAAGCATGAATACTTATGGCAAG
ATAGAGAGGTGAATGTGGAGTGACTGCAATTGGAGGTTTGCCTGGTTCACAAGTCGGCTT
TTAATTATTGTAGCCTAGAGTCAAATGTTTTTTTCCCCATGTTCCCCATATATTGTTCCT
GTAACAATAGGTCTGCTGGAAAAAATTGTAAGTTTGAATTTTAATATAGAGATAAGACCT
TGTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q2KHR3
Definition sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo sapiens
Align length 48
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949570|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_F11, 5'
         (363 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Hom...    33   0.58 
sp|A1BCI0|Y037_CHLPD UPF0102 protein Cpha266_0037 OS=Chlorobium ...    31   2.2  
sp|Q9H987|SYP2L_HUMAN Synaptopodin 2-like protein OS=Homo sapien...    31   2.2  
sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo...    30   2.9  
sp|Q6DPZ9|HEMA_I03A1 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.9  
sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenor...    29   6.4  
sp|Q8TGI1|ATG1_PICPA Serine/threonine-protein kinase ATG1 OS=Pic...    29   6.4  
sp|A6NEH8|CJ041_HUMAN Putative uncharacterized protein C10orf41 ...    29   8.4  
sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type recepto...    29   8.4  

>sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo
            sapiens GN=QSER1 PE=1 SV=2
          Length = 1735

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 149  KGSPDPQNQSLWLEEMVSS-SNPNGQIF*KKSDLEEGLSPAMFTRRFL 9
            K  P P+ +  W EE  SS S+ + +I    SD EE   PA F  RFL
Sbjct: 1493 KAEPPPKKRKKWKEEFSSSQSDSSPEIHTSSSDDEEFEPPAPFVTRFL 1540


>sp|A1BCI0|Y037_CHLPD UPF0102 protein Cpha266_0037 OS=Chlorobium
           phaeobacteroides (strain DSM 266) GN=Cpha266_0037 PE=3
           SV=1
          Length = 127

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 348 YIKIQTYNFFQQTYCYRNNIWGTWGKKHLTLGYNN*K--PTCEPGKPPIAVTP 196
           Y+    Y   Q+ Y YR N      KKH T+ +   K   + E G P  AVTP
Sbjct: 19  YLSRHGYRIIQRNYRYRRNEIDIIAKKHATICFIEVKTRASLEKGHPSEAVTP 71


>sp|Q9H987|SYP2L_HUMAN Synaptopodin 2-like protein OS=Homo sapiens
           GN=SYNPO2L PE=2 SV=3
          Length = 977

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -1

Query: 240 KPTCEPGKPPIAVTPHSPLYLAISIHAFSR*RKPRPSKSEPLVRGDGLKFKPQRANFLEE 61
           K    PGK     +P+  L   +     +   KPR   +E     D L    +  NF++ 
Sbjct: 634 KQMFRPGKEETKNSPNPELLSLVQ----NLDEKPRAGGAESGPEEDALSLGAEACNFMQP 689

Query: 60  IGSRGRSFASHVHAQIPP 7
           +G+R      HV  + PP
Sbjct: 690 VGARSYKTLPHVTPKTPP 707


>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo
           sapiens GN=MBD5 PE=2 SV=2
          Length = 1494

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 219 KPPIAVTPHSPLYLAISIHAFSR*RKPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRS 40
           KPP    P  P   A+        +KP  S+ +PL   D +  KP   N    +     S
Sbjct: 331 KPPQGPPPPPPPSCALQ-------KKPLTSEKDPLGILDPIPSKPVNQN---PVIINPTS 380

Query: 39  FASHVHAQIPPFN 1
           F S+VH+Q+P  N
Sbjct: 381 FHSNVHSQVPMMN 393


>sp|Q6DPZ9|HEMA_I03A1 Hemagglutinin (Fragment) OS=Influenza A virus
           (strain A/Chicken/Shantou/4231/2003 H5N1 genotype V)
           GN=HA PE=3 SV=1
          Length = 565

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/83 (30%), Positives = 33/83 (39%)
 Frame = -1

Query: 327 NFFQQTYCYRNNIWGTWGKKHLTLGYNN*KPTCEPGKPPIAVTPHSPLYLAISIHAFSR* 148
           NF    Y Y+    G        LGY N    C+   P  A+    P +   +IH  +  
Sbjct: 262 NFIAPEYAYKIVKKGDSAIMKSELGYGNCNTKCQT--PIGAINSSMPFH---NIHPLTIG 316

Query: 147 RKPRPSKSEPLVRGDGLKFKPQR 79
             P+  KS  LV   GL+  PQR
Sbjct: 317 ECPKYVKSSRLVLATGLRNSPQR 339


>sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1
            OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=1
          Length = 1927

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 231  CEPGKPPIAVTPHSPLYLAISIHAFS 154
            CEP +P +A TP SPL  A S  +F+
Sbjct: 1558 CEPPRPKLAQTPGSPLLSAPSTSSFT 1583


>sp|Q8TGI1|ATG1_PICPA Serine/threonine-protein kinase ATG1 OS=Pichia
           pastoris GN=ATG1 PE=3 SV=1
          Length = 796

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 255 GYNN*KPTCEPGKPPIAVTPHSPLYLAISIHAFSR*RKPRPSKSEPLV 112
           G N  +P+    K PI+++P + L  AI+I +    ++P P K+ P++
Sbjct: 465 GSNQRRPSFGDRKVPISISPTNALSKAINIASNRLFKQPSPPKATPVL 512


>sp|A6NEH8|CJ041_HUMAN Putative uncharacterized protein C10orf41
           OS=Homo sapiens GN=C10orf41 PE=2 SV=1
          Length = 195

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
 Frame = -1

Query: 285 GTWGKKHLTL------GYNN*KPTCEPGKPPIAVTPHSPLYLAISIHAFSR*RKPRPSKS 124
           G WGKKHL L       +++  P+ + G+P I       + LA+   AF R     P++ 
Sbjct: 2   GVWGKKHLRLTHAPSPTFSHLPPSPQAGEPGI-----DGISLAVVCAAFIR---IHPARR 53

Query: 123 EPLVRGDGLKFKP-QRANFLEEIGSRGRSFAS 31
            P   G  L   P  R N   E+ S  R  AS
Sbjct: 54  HPARNGSRLACTPTPRPNAGLEVVSSARVAAS 85


>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1
            OS=Mus musculus GN=Celsr1 PE=2 SV=2
          Length = 3034

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -2

Query: 170  VFMLSADKGSPDPQNQSLWLEEMVSSSNPNGQIF*KKSDLE 48
            ++ L+ D+GSP+P + S+ ++  V   N N  +F +K +LE
Sbjct: 981  LWALAVDRGSPNPLSASVGIQVSVLDINDNPPVF-EKDELE 1020
tr_hit_id A2F590
Definition tr|A2F590|A2F590_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 62
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949570|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_F11, 5'
         (363 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2F590|A2F590_TRIVA Putative uncharacterized protein OS=Trich...    36   0.84 
tr|B6N4V9|B6N4V9_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|Q8P3W9|Q8P3W9_XANCP ATP-dependent helicase OS=Xanthomonas cam...    33   5.5  
tr|Q4UPE6|Q4UPE6_XANC8 ATP-dependent helicase OS=Xanthomonas cam...    33   5.5  
tr|B0RXX1|B0RXX1_XANCB ATP-dependent helicase OS=Xanthomonas cam...    33   5.5  
tr|Q9L538|Q9L538_XANOR Putative damage-inducible protein G (ATP-...    33   7.1  
tr|Q8PFF2|Q8PFF2_XANAC ATP-dependent helicase OS=Xanthomonas axo...    33   7.1  
tr|Q3BN09|Q3BN09_XANC5 ATP-dependent helicase OS=Xanthomonas cam...    33   7.1  
tr|Q2P8J7|Q2P8J7_XANOM Putative damage-inducible protein G OS=Xa...    33   7.1  
tr|B2SSY1|B2SSY1_XANOP ATP-dependent helicase OS=Xanthomonas ory...    33   7.1  
tr|Q6EBS8|Q6EBS8_9INFA Hemagglutinin (Fragment) OS=Influenza A v...    33   9.3  
tr|A7XVH9|A7XVH9_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    33   9.3  
tr|A4PDZ3|A4PDZ3_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    33   9.3  
tr|A4PDY9|A4PDY9_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    33   9.3  
tr|Q9H6S7|Q9H6S7_HUMAN cDNA: FLJ21924 fis, clone HEP04086 OS=Hom...    33   9.3  
tr|B3KWV1|B3KWV1_HUMAN cDNA FLJ43914 fis, clone TESTI4011161, we...    33   9.3  

>tr|A2F590|A2F590_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_159350 PE=4 SV=1
          Length = 1602

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = -1

Query: 237 PTCEPGKPPIAVTPHSPLYLAISIHAFSR*RKPRPSKSEPLVRGDGLKFKPQRANFLEEI 58
           P   PG  PI+++ HS L LA++I   +   +P+P K +P    +    KPQ+ NF+ ++
Sbjct: 84  PILTPGTNPISISVHS-LELALAIKERT---EPKPEKPKPATNPEQDSQKPQKQNFITKL 139

Query: 57  GS 52
            S
Sbjct: 140 TS 141


>tr|B6N4V9|B6N4V9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_90708 PE=4 SV=1
          Length = 422

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = -3

Query: 361 KVLSLY*NSNLQFFPADLLLQEQYMGNMGKKTFDSRLQ*LKADL*TRQTSNCSHSTFTSL 182
           KVL +Y   NL    A LLL+     N+ K T  SR   L+ +   R + +C H    + 
Sbjct: 99  KVLQIYAGMNLSHCAAALLLKSPQTTNISKNTRMSRTHLLEQE---RNSQSCKHGLPENN 155

Query: 181 SCHKYSCFQQIK--EAPTLKIRASG*RRWSQVQTPTG-KFSRRNR 56
           S    +   Q +  EA  L  +    RR S ++ P+  KF RR R
Sbjct: 156 SVVSLTSLGQSQETEAEFLHPQQQRRRRSSSIKLPSSLKFRRRPR 200


>tr|Q8P3W9|Q8P3W9_XANCP ATP-dependent helicase OS=Xanthomonas
           campestris pv. campestris GN=dinG PE=4 SV=1
          Length = 711

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAPNGKLPPQWGPAIEELGEETRALFNWVHA 388


>tr|Q4UPE6|Q4UPE6_XANC8 ATP-dependent helicase OS=Xanthomonas
           campestris pv. campestris (strain 8004) GN=XC_4038 PE=4
           SV=1
          Length = 711

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAPNGKLPPQWGPAIEELGEETRALFNWVHA 388


>tr|B0RXX1|B0RXX1_XANCB ATP-dependent helicase OS=Xanthomonas
           campestris pv. campestris (strain B100) GN=xcc-b100_4138
           PE=4 SV=1
          Length = 711

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAPNGKLPPQWGPAIEELGEETRALFNWVHA 388


>tr|Q9L538|Q9L538_XANOR Putative damage-inducible protein G
           (ATP-dependent helicase) OS=Xanthomonas oryzae pv.
           oryzae GN=dinG PE=4 SV=2
          Length = 805

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 442 KPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHA 483


>tr|Q8PFF2|Q8PFF2_XANAC ATP-dependent helicase OS=Xanthomonas
           axonopodis pv. citri GN=dinG PE=4 SV=1
          Length = 711

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHA 388


>tr|Q3BN09|Q3BN09_XANC5 ATP-dependent helicase OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=dinG PE=4
           SV=1
          Length = 711

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHA 388


>tr|Q2P8J7|Q2P8J7_XANOM Putative damage-inducible protein G
           OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
           GN=XOO0375 PE=4 SV=1
          Length = 805

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 442 KPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHA 483


>tr|B2SSY1|B2SSY1_XANOP ATP-dependent helicase OS=Xanthomonas oryzae
           pv. oryzae (strain PXO99A) GN=PXO_02825 PE=4 SV=1
          Length = 710

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 144 KPRPSKSEPLVRGDGLKFKPQRANFLEEIGSRGRSFASHVHA 19
           KP P + +PL R    K  PQ    +EE+G   R+  + VHA
Sbjct: 347 KPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHA 388