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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949577
Clone id TST38A01NGRL0006_F18
Library
Length 683
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_F18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATAACAACCCTCCCCGAGCTGGCCATCACTGCCTGCTGCGGAATCTTCACTTGTTGCCCC
GCGGCTCCTGTTTGCTTCCTTGCAAGGGAAGCGGGAGCAGCTTTCGCTGCTGAGAGAGCA
GAGGCTGTGATCAAGGAATAAAGCTCTTCTCGTGTTCACATACTACACAGGAGTAGGAGA
AAGTCTGCCAGTGTAGGGGCAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAT
TAAGGAGCGCACGCAGGTGCGCACTCCTTGAGAGAGTGTGTGCGCGTCCCGGCGTGTTCT
TTTTCTTTATGGTTCTTCCTTAAAATTGAGATGATGTGAGTGCCAGCAGCGGTCAGCTTC
CCAACCTCGTCCATGTCGCTGGAGTCCTCCTCGATTGTGTCGAAGGTTCGATTAAACATC
CTCATCAATGTGCTTCCCTCCCTCAGTACGCCCCTCTCTCTCCCCTTCTCTCACAGCTTG
CCATTGATCACATCCGAGGCCATGGGCTTGCTTTATGACAGATAGTCATTTGCCGCGAGC
CACGGAGGGGAATACGACTTGAGGAAAGGCAGATGGGTGAAAGACAAGAAGATGAAGCTC
TTATACACCAACAATTCGTGTCCCCTGTTGATGGCCACAAAAAACAGCTGCGAGGGAAAT
GGGCGGCCCGACNAGTAATATGT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949577|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_F18, 5'
         (683 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q9FHM0
Definition tr|Q9FHM0|Q9FHM0_ARATH Genomic DNA, chromosome 5, TAC clone:K17N15 (Putative uncharacterized protein At5g51640) (Leaf-senescence-related protein) OS=Arabidopsis thaliana
Align length 44
Score (bit) 48.5
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949577|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_F18, 5'
         (683 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FHM0|Q9FHM0_ARATH Genomic DNA, chromosome 5, TAC clone:K17N...    49   4e-04
tr|Q8LQG0|Q8LQG0_ORYSJ Leaf senescence protein-like (Os01g091480...    48   7e-04
tr|B8A852|B8A852_ORYSI Putative uncharacterized protein OS=Oryza...    48   7e-04
tr|A3A0V5|A3A0V5_ORYSJ Putative uncharacterized protein OS=Oryza...    48   7e-04
tr|Q9STK1|Q9STK1_ARATH Putative uncharacterized protein T30C3.30...    47   0.001
tr|Q8VYS5|Q8VYS5_ARATH Putative uncharacterized protein At4g2536...    47   0.001
tr|Q207T1|Q207T1_9ASPA Putative uncharacterized protein OS=Gymna...    46   0.003
tr|Q84TV3|Q84TV3_ORYSJ Os03g0817500 protein OS=Oryza sativa subs...    42   0.048
tr|A3AP22|A3AP22_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.048
tr|A2XND7|A2XND7_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.048
tr|Q9LRS2|Q9LRS2_ARATH Emb|CAA23045.1 (Putative uncharacterized ...    41   0.062
tr|A5BF81|A5BF81_VITVI Putative uncharacterized protein OS=Vitis...    41   0.062
tr|Q5W6Y3|Q5W6Y3_ORYSJ Os05g0356700 protein OS=Oryza sativa subs...    40   0.14 
tr|A7P1X7|A7P1X7_VITVI Chromosome chr19 scaffold_4, whole genome...    40   0.14 
tr|A5ADJ7|A5ADJ7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.14 
tr|A2Y3M7|A2Y3M7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.14 
tr|A7QHP3|A7QHP3_VITVI Chromosome chr8 scaffold_99, whole genome...    40   0.18 
tr|A5AM17|A5AM17_VITVI Putative uncharacterized protein OS=Vitis...    40   0.18 
tr|O82509|O82509_ARATH F2P3.4 protein (At4g11090) (Putative unch...    39   0.24 
tr|Q9SSL4|Q9SSL4_ARATH F3N23.34 protein OS=Arabidopsis thaliana ...    39   0.40 
tr|Q9CAT0|Q9CAT0_ARATH Putative uncharacterized protein T18K17.2...    39   0.40 
tr|Q1PFD9|Q1PFD9_ARATH Putative uncharacterized protein OS=Arabi...    39   0.40 
tr|Q10MX4|Q10MX4_ORYSJ Os03g0291200 protein OS=Oryza sativa subs...    39   0.40 
tr|B8ALL7|B8ALL7_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.40 
tr|B2WS75|B2WS75_ARAHA Putative uncharacterized protein OS=Arabi...    39   0.40 
tr|A0MEG1|A0MEG1_ARATH Putative uncharacterized protein (Fragmen...    39   0.40 
tr|Q9LH70|Q9LH70_ARATH Gb|AAD22996.1 OS=Arabidopsis thaliana PE=...    38   0.69 
tr|Q3EB61|Q3EB61_ARATH Uncharacterized protein At3g14850.2 OS=Ar...    38   0.69 
tr|B6TH81|B6TH81_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.69 
tr|B4FVH0|B4FVH0_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.69 

>tr|Q9FHM0|Q9FHM0_ARATH Genomic DNA, chromosome 5, TAC clone:K17N15
           (Putative uncharacterized protein At5g51640)
           (Leaf-senescence-related protein) OS=Arabidopsis
           thaliana GN=YLS7 PE=2 SV=1
          Length = 501

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 26/44 (59%), Positives = 28/44 (63%)
 Frame = +1

Query: 550 EYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           E DL  G W  D  M  LYTNNSCPLL   +N C+GNGRPD  Y
Sbjct: 137 ECDLYHGNWFYDP-MGPLYTNNSCPLLTQMQN-CQGNGRPDKGY 178


>tr|Q8LQG0|Q8LQG0_ORYSJ Leaf senescence protein-like (Os01g0914800
           protein) OS=Oryza sativa subsp. japonica GN=P0004D12.12
           PE=4 SV=1
          Length = 502

 Score = 47.8 bits (112), Expect = 7e-04
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +1

Query: 547 GEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           G  DL  G WV D    L YTNNSCP++   +N C+GNGRPD  Y
Sbjct: 145 GSCDLYHGHWVFDSSGPL-YTNNSCPIITQMQN-CQGNGRPDKDY 187


>tr|B8A852|B8A852_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04903 PE=4 SV=1
          Length = 502

 Score = 47.8 bits (112), Expect = 7e-04
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +1

Query: 547 GEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           G  DL  G WV D    L YTNNSCP++   +N C+GNGRPD  Y
Sbjct: 145 GSCDLYHGHWVFDSSGPL-YTNNSCPIITQMQN-CQGNGRPDKDY 187


>tr|A3A0V5|A3A0V5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004427 PE=4 SV=1
          Length = 1020

 Score = 47.8 bits (112), Expect = 7e-04
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +1

Query: 547 GEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           G  DL  G WV D    L YTNNSCP++   +N C+GNGRPD  Y
Sbjct: 663 GSCDLYHGHWVFDSSGPL-YTNNSCPIITQMQN-CQGNGRPDKDY 705


>tr|Q9STK1|Q9STK1_ARATH Putative uncharacterized protein T30C3.30
           (Putative uncharacterized protein AT4g25360)
           OS=Arabidopsis thaliana GN=T30C3.30 PE=4 SV=1
          Length = 533

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 27/52 (51%), Positives = 31/52 (59%)
 Frame = +1

Query: 526 SFAASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           S  AS   E DL +G W  D    L YTNNSCP+L   +N C+GNGRPD  Y
Sbjct: 166 SETASAEPECDLYQGSWFYDPGGPL-YTNNSCPVLTQMQN-CQGNGRPDKGY 215


>tr|Q8VYS5|Q8VYS5_ARATH Putative uncharacterized protein At4g25360
           OS=Arabidopsis thaliana GN=At4g25360 PE=2 SV=1
          Length = 533

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 27/52 (51%), Positives = 31/52 (59%)
 Frame = +1

Query: 526 SFAASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           S  AS   E DL +G W  D    L YTNNSCP+L   +N C+GNGRPD  Y
Sbjct: 166 SETASAEPECDLYQGSWFYDPGGPL-YTNNSCPVLTQMQN-CQGNGRPDKGY 215


>tr|Q207T1|Q207T1_9ASPA Putative uncharacterized protein
           OS=Gymnadenia conopsea PE=2 SV=1
          Length = 472

 Score = 45.8 bits (107), Expect = 0.003
 Identities = 25/49 (51%), Positives = 30/49 (61%)
 Frame = +1

Query: 535 ASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           AS     DL  G+WV D +  L YTN SCPL+   +N C+GNGRPD  Y
Sbjct: 115 ASDANLCDLYHGKWVYDPRGPL-YTNISCPLITQMQN-CQGNGRPDKDY 161


>tr|Q84TV3|Q84TV3_ORYSJ Os03g0817500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0094J08.14 PE=2 SV=1
          Length = 473

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 526 SFAASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           S ++S GGE DL  GRWV D+    LY  ++C  +M+ +++CE  GR D  Y
Sbjct: 99  SSSSSGGGECDLFSGRWVYDEAAYPLYRESAC-RVMSEQSACEKYGRTDLRY 149


>tr|A3AP22|A3AP22_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012544 PE=4 SV=1
          Length = 473

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 526 SFAASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           S ++S GGE DL  GRWV D+    LY  ++C  +M+ +++CE  GR D  Y
Sbjct: 99  SSSSSGGGECDLFSGRWVYDEAAYPLYRESAC-RVMSEQSACEKYGRTDLRY 149


>tr|A2XND7|A2XND7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14074 PE=4 SV=1
          Length = 473

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 526 SFAASHGGEYDLRKGRWVKDKKMKLLYTNNSCPLLMATKNSCEGNGRPDX*Y 681
           S ++S GGE DL  GRWV D+    LY  ++C  +M+ +++CE  GR D  Y
Sbjct: 99  SSSSSGGGECDLFSGRWVYDEAAYPLYRESAC-RVMSEQSACEKYGRTDLRY 149